Using half-hourly measurements and simulations with a process-based model, we show that underestimation of efflux due to disturbance of the soil CO2 diffusion gradient arising from chamber closure for periods of up to 3 min is much less (<4%) than is often assumed. Also, we found that use of simple linear regression for calculating the rate of change in the chamber headspace concentration is the best method in comparison to non-linear models; it is robust and, for lid closure periods <3%of the chamber-soil system time constant, results in <2%underestimation of the efflux, which is smaller than the overestimation using some non-linear methods.
The effective volume of a chamber is significantly higher than its geometric volume and varies markedly seasonally so its determination is important for accurate efflux measurements. A procedure is described for determining the effective volume, which we recommend should be followed at least once a day. We also describe various steps to ensure accurate measurements, including the use of a seasonal threshold value of the ratio of root mean square error of the linear fit to headspace concentration versus time to its slope for rejecting questionable measurements, and demonstrate the use of a procedure combining the use of automated and manual quality assurance/quality control in removing questionable measurements.