State-space methods for more completely capturing behavioral dynamics from animal tracks

详细信息	查看全文 | 推荐本文 |

• 作者：Greg A. Breed^a ; ^b ; ^{gbreed@fas.harvard.edu} ; Daniel P. Costa^a ; Ian D. Jonsen^b ; Patrick W. Robinson^a ; Joanna Mills-Flemming^c
• 关键词：GPS tracking ; Behavioral dynamics ; State-space model ; Parameter estimation ; Particle filters ; Particle smoothers ; State augmentation
• 刊名：Ecological Modelling
• 出版年：2012
• 期刊代码：49_03043800
• 类别：cp
• 出版时间：24 June, 2012
• 卷：235-236
• 期：Complete
• 页码：49-58
• 文件大小：2330 K

摘要

State-space models (SSMs) are now the tools of choice for analyzing animal tracking data. A wide variety of such data are being collected worldwide and modeled using state-space methods to better understand population dynamics, animal behavior and physical and environmental processes. The central goal of such analyses is the estimation of biologically interpretable static parameters. Most approaches implement some form of MCMC or Kalman filter to estimate these parameters. We demonstrate the utility in allowing time-varying (rather than static) parameters to more completely capture dynamic features of the processes of interest, in this case the behavioral dynamics of tracked marine animals. We develop and demonstrate a parameter augmented sequential Monte Carlo method (also referred to as an augmented particle filter or particle smoother (PF or PS)) that allows straightforward estimation of both static and time-varying parameters from tracking data. We focus specifically on temporally irregular GPS data describing marine animal movement with the goal of better understanding the underlying behavioral dynamics. Using tracking data from California sea lions (Zalophus californianus) we demonstrate the approach's ability to detect subtle yet biologically relevant changes in behavior.