Here, we present the crystal structure of the family 31 carbohydrate-binding module (CBM) of β-1,3-xylanase from
Alcaligenes sp. strain XY-234 (
AlcCBM31) determined at a resolution of 1.25
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. The
AlcCBM31 shows affinity with only β-1,3-xylan. The
AlcCBM31 molecule makes a β-sandwich structure composed of eight β-strands with a typical immunoglobulin fold and contains two intra-molecular disulfide bonds. The folding topology of
AlcCBM31 differs from that of the large majority of other CBMs, in which eight β-strands comprise a β-sandwich structure with a typical jelly-roll fold.
AlcCBM31 shows structural similarity with CBM structures of family 34 and family 9, which also adopt structures based on immunoglobulin folds.