摘要
本文总结了天然半导体矿物光电子能量及矿物与微生物协同作用的最新研究成果,特别强调地表微生物、矿物和太阳光多元复杂体系中金属氧化物和金属硫化物半导体矿物的可见光激发光电子特征,阐述了矿物光电子能量利于地球早期生命起源与演化、促进化能自养和化能异养微生物生长代谢、调控矿物与微生物协同作用实现固碳作用。进而提出矿物光电子能有效地将二氧化碳还原为有机物质,可为生命起源提供有机物质基础的认识。
This review paper summarizes recent research results in the field of semiconducting minerals and microorganisms synergistic interactions,lay particular emphasis on research results of the features of visible light-excited photoelectrons from nature semiconducting minerals of metal oxides and metal sulfides of ternary system of microorganisms,minerals and solar light.The promotion of life origin and evolution by mineral photoelectrons,the discovery of stimulated the growth of chemoautotrophic and heterotrophic bacteria regarding photoelectron utilization and the carbon dioxide fixation by the synergy between mineral photoelectrons and microorganisms are reviewed as well.Photoelectrons could effectively reduce carbon dioxide to organic matters,possibly providing organic matter foundation for the origin of life.
引文
Blankenship R E,Tiede D M,Barber J,Brudvig G W,Fleming G,Ghirardi M,Gunner M R,Junge W,Kramer D M,Melis A,Moore T A,Moser C C,Nocera D G,Nozik A J,Ort D R,Parson W W,Prince R C,Sayre R T.2011.Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement.Science,332(6031):805-809
Chen Y,Lu A,Li Y,Zhang L,Yip H Y,Zhao H,An T,Wang P K.2011.Naturally occurring sphalerite as a novel cost-effective photocatalyst for bacterial disinfection under visible light.Environmental Science Technology,45(13):5689-5695
Chyba C,Sagan C.1992.Endogenous production,exogenous delivery and impact-shock synthesis of organic molecules:an inventory for the origins of life.Nature,355:125-32
Cologgi D L,Lampa-Pastirk S,Speers A M,Kelly S D,Reguera G.2011.Extracellular reduction of uranium via Geobacter conductive pili as a protective cellular mechanism.Proceedings of the National Academy of Sciences of the United States of America,108(37):15248-15252
Coursolle D,Baron D B,Bond D R,Gralnick J A.2010.The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis.Journal of Bacteriology,192(2):467-474
Dalrymple O K,Stefanakos E,Trotz M A,Goswami D Y.2010.A review of the mechanisms and modeling of photocatalytic disinfection.Applied Catalysis B:Environmental,98(1-2):27-38
Ding H,Li Y,Lu A,Jin S,Quan C,Wang C,Wang X,Zeng C,Yan Y.2010.Photocatalytically improved azo dye reduction in a microbial fuel cell with rutile-cathode.Bioresource Technology,101(10):3500-3505
Eggins B R,Palmer F L,Byrne J A.1997.Photocatalytic treatment of humic substances in drinking water.Water Research,31(5):1223-1226
Geesey G G,Borch T,Reardon C L.2008.Resolving biogeochemical phenomena at high spatial resolution through electron microscopy.Geobiology,6(3):263-269
Gorby Y A,Yanina S,Mclean J S,Rosso K M,Moyles D,Dohnalkova A,Beveridge T J,Chang I S,Kim B H,Kim K S,Culley D E,Reed S B,Romine M F,Saffarini D A,Hill E A,Shi L,Elias DA,Kennedy D W,Pinchuk G,Watanabe K,Ishii S,Logan B,Nealson K H,Fredrickson J K.2006.Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms.Proceedings of the National Academy of Sciences of the United States of America,103(30):11358-11363
Gralnick J A,Vall H,Lies D P,Newman D K.2006.Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1.Proceedings of the National Academy of Sciences of the United States of America,103(12):4699-4674
Guzman M I and Martin S T.2009.Prebiotic metabolism:Production by mineral photoelectrochemistry ofα-ketocarboxylic acids in the reductive tricarboxylic acid cycle.Astrobiology,9:833-842
Haldane J B S.1929.The origin of life.Rationalist Annual,148:3-10
Hazen R M,Papineau D,Bleeker W,Downs R T,Ferry J M,Mccoy TJ,Sverjensky D A,Yang H X.2008.Mineral evolution.American Mineralogist,93(11-12):1693-1720
Hernandez M E and Newman D K.2001.Extracellular electron transfer.Cellular and Molecular Life Sciences,58(11):1562-1571
Hocking R K,Brimblecombe R,Chang L Y,Singh A,Cheah M H,Glover C,Casey W H,Spiccia L.2011.Water-oxidation catalysis by manganese in a geochemical-like cycle.Nature Chemistry,3(6):461-466
Huber R,Deisenhofer J,Colman P M,Matsushima M,Palm W.1976.Crystallographic structure studies of an Ig G molecule and an Fc fragment.Nature,264(5585):415-420
Kelley D S,Karson J A,Blackman D K,Früh-Green G L,Butterfield DA,Lilley M D,Olson E J,Schrenk M O,Roe K K,Lebon G T,Rivizzigno P&the AT3-60 Shipboard Party.2001.An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30 N.Nature,412:145-149
Kornienko N,Sakimoto K K,Herlihy D M,Nguyen S C,Alivisatos AP,Harris C B,Schwartzberg A,Yang P D.2016.Spectroscopic elucidation of energy transfer in hybrid inorganic-biological organisms for solar-to-chemical production.Proceedings of the National Academy of Sciences of the United States of America,113(42):11750-11755
Krinsley D,Dorn R I,Digregorio B.2009.Astrobiological implications of rock varnish in Tibet.Astrobiology,9(6):551-562
Lane N,Allen J F,Martin W.2010.How did LUCA make a living?Chemiosmosis in the origin of life.Bio Essays,32(4):271-280
Lovley D R,Phillips E J.1988.Novel mode of microbial energy metabolism:organic carbon oxidation coupled to dissimilatory reduction of iron or manganese.Applied and Environmental Microbiology,54(6),1472-1480
Lovley D R,Coates J D,Blunt-Harris E L,Phillips E J P,Woodward JC.1996.Humic substances as electron acceptors for microbial respiration.Nature,382(6590):445-448
Lovley D R,Holmes D E,Nevin K P.2004.Dissimilatory fe(iii)and mn(iv)reduction.Advances in microbial physiology,49:219-286
Lu A H,Li Y.2012a.Light Fuel Cell(LFC):A novel device for interpretation of microorganisms-involved mineral photochemical process.Geomicrobiology Journal,29(3):236-243
Lu A H,Li Y,Jin S.2012b.Interactions between semiconducting minerals and bacteria under light.Elements,8(2):125-130
Lu A H,Li Y,Jin S,Wang X,Wu X L,Zeng C P,Li Y,Ding H R,Hao R X,Lv M,Wang C Q,Tang Y Q,Dong H L.2012c.Growth of non-phototrophic microorganisms using solar energy through mineral photocatalysis.Nature Communications,3:768
Lu A H,Li Y,Wang X,Ding H R,Zeng C P,Yang X X,Hao R X,Wang C Q,Santosh M.2013.Photoelectrons from minerals and microbial world:A perspective on life evolution in the early Earth.Precambrian Research,231:401-408
Malato S,Fernandez-Ibanez P,Maldonado M I,Blanco J,Gernjak W.2009.Decontamination and disinfection of water by solar photocatalysis:recent overview and trends.Catalysis Today,147(1):1-59
Martin W F.2011.Early evolution without a tree of life.Biol Direct,6:1-25
Matsumoto N,Yoshinaga H,Ohmura N,Ando A,Saiki H.1999.Extension of logarithmic growth of Thiobacillus ferrooxidans using potential controlled electrochemical cultivation system.Process Metallurgy,9:757-766
Mulkidjanian A Y,Bychkov A Y,Dibrova D V,Galperin M Y,Koonin E V.2012.Origin of first cells at terrestrial,anoxic geothermal fields.Proceedings of the National Academy of Sciences of the United States of America,109(14):E821-E830
Myers C R,Nealson K H.1988.Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor.Science,240:1319-1321
Nakasono S,Matsumoto N,SAIKI H.1997.Electrochemical cultivation of Thiobacillus ferrooxidans by potential control.Bioelectrochemistry and Bioenergetics,43(1):61-66
Natarajan K A.1992.Effect of applied potentials on the activity and growth of Thiobacillus ferrooxidans.Biotechnology and Bioengineering,39(9):907-913
Nealson K H,Belz A,Mckee B.2002.Breathing metals as a way of life:geobiology in action.Antonie van Leeuwenhoek,81(1-4):215-222
Newman D K,Kolter R.2000.A role for excreted quinones in extracellular electron transfer.Nature,4:94-97
Nielsen L P,Risgaard-Petersen N,Fossing H,Christensen P B,Sayama M.2010.Electric currents couple spatially separated biogeochemical processes in marine sediment.Nature,463(7284):1071-1074
Pfeffer C,Larsen S,Song J,Dong M D,Besenbacher F,Meyer R L,Kjeldsen K U,Schreiber L,Gorby Y A,El-Naggar M Y,Leung KM,Schramm A,Risgaard-Petersen N,Nielsen L P.2012.Filamentous bacteria transport electrons over centimetre distances.Nature,491(7423):218-221
Powner M W,Gerland B,Sutherland J D.2009.Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.Nature,459:239-242
Quatrini R,Appia-Ayme C,Denis Y,Ratouchniak J,Veloso F,Valdes J,Lefimil C,Silver S,Roberto F,Orellana O,Denizot F,Jedlicki E,Holmes D,Bonnefoy V.2006.Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling.Hydrometallurgy,83(1-4):263-272
Reguera G,Mccarthy K D,Mehta T,Nicoll J S,Tuominen M T,Lovley D R.2005.Extracellular electron transfer via microbial nanowires.Nature,435:1098-1101
Sakimoto K K,Wong A B,Yang P D.2016.Self-photosensitization of nonphotosynthetic bacteria for solar-to-chemical production.Science,351(6268):74-77
Schoonen M A A,Xu Y,Strongin D R.1998.Introduction to geological catalysis.Journal of Geochemical Exploration,62(1-3)
Shuey R T.1975.Semiconducting ore minerals.Amsterdam:Elsevier Scientific Publishing Company
Sleep N H,Meibom A,Fridriksson T,Coleman R G,Bird D K.2004.H2-rich fluids from serpentinization:geochemical and biotic implications.Proceedings of the National Academy of Sciences of the United States of America,101(35):12818-12823
Stüeken E E,Anderson R E,Bowman J S,Brazelton W J,.ColangeloLillis J,Goldman A D,Som S M,Baross J A.2013.Did life originate from a global chemical reactor?Geobiology,11:101-126
Urey H C.1962.Life-Forms in Meteorites:Origin of Life-like Forms in Carbonaceous Chondrites Introduction.Nature,193:1119-1123
Waite T D.1990.Photo-redox processes at the mineral-water interface.Review in Mineralogy,23(5):559-603
Weber K A,Achenbach L A,COATES J D.2006.Microorganisms pumping iron:Anaerobic microbial iron oxidation and reduction.Nature Reviews Microbiology,4:752-764
Winogradsky S.1949.Microbiologie du Sol:Problèmes et Méthodes:Cinquante ans de Recherches.Paris:Masson et Ciediteurs,16-41
Xiong Y,Shi L,Chen B,Mayer M U,Lower B H,Londer Y,Bose S,Hochella M F,Fredrichson J K,Squier T C.2006.High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome Omc A.Journal of the American Chemical Society,128(43):13978-13979
Xu Y,Schoonen M A A.2000.The absolute energy positions of conduction and valence bands of selected semiconducting minerals.American Mineralogist,85:543-556
Zhang X V,Ellery S P,Friend C M,Holland H D,Michel F M,Schoonen M A A,Martin S T.2007.Photodriven reduction and oxidation reactions on colloidal semiconductor particles:implications for prebiotic synthesis.Journal of Photochemistry and Photobiology A:Chemistry,185(2-3):301-311
吕明,鲁安怀,郝瑞霞,李艳,杨若晨,王长秋.2008.铁细菌利用天然金红石光生电子能量研究.岩石矿物学杂志,27(3):212-220
吴相钰,陈守良,葛明德.2009.陈阅增普通生物学(第三版).北京:高等教育出版社,60-75
鲁安怀,李艳,王鑫,丁竑瑞,刘熠,王长秋.2014a.关键带中天然半导体矿物光电子的产生与作用.地学前缘,21(3):256-264
鲁安怀,李艳,王鑫,丁竑瑞,曾翠平,郝瑞霞,王长秋.2013.半导体矿物介导非光合微生物利用光电子新途径.微生物学通报,40(1):190-202
鲁安怀,王鑫,李艳,丁竑瑞,王长秋,曾翠平,郝瑞霞,杨晓雪.2014b.矿物光电子与地球早期生命起源及演化初探.中国科学:地球科学,44(6):1117-1123
鲁安怀,王长秋,李艳.2015.矿物学环境属性概论.北京:科学出版社,1-604
鲁安怀.2003.无机界矿物天然自净化功能之矿物光催化作用.岩石矿物学杂志,22(4):323-331
鲁安怀.2007.生命活动中矿化作用的环境响应机制研究.高校地质学报,13(4):613-620
鲁安怀.2009.小学科彰显巨大生命力,环境矿物学发展前景广阔-写在《岩石矿物学杂志》出版我国环境矿物学专辑十周年之际.岩石矿物学杂志,28(6):503-506
鲁安怀.2015.矿物学环境属性研究新进展(代序).岩石矿物学杂志,34(6):795-802