光交联技术的生物应用研究进展
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摘要
光交联反应作为一种快速、简单和时空可控的交联工具广泛地应用于化学、生物、医学和材料等不同研究领域。本文详细介绍了常用的小分子光交联基团的结构、分类及反应机理,重点综述了光交联技术在生物医学领域的应用研究,并对其应用前景进行了展望。目前大多光交联基团仅对紫外和可见光具有敏感性,紫外和可见光穿透力弱、组织吸收强和散射等问题严重限制了该技术在生物体内的应用研究。因此,进一步研究光交联技术在生物体系的应用和开发长波长光(如近红外或远红外光)介导的新交联技术对于药物研发和疾病诊疗具有重要的科学意义。
Photo-crosslinking technique is widely used in different research fields such as chemistry,biology,medicine and materials as a fast,simple and space-time controlled cross-linking tool.In this paper,the structure,classification and reaction mechanism of commonly used small-molecule photo-crosslinking groups are introduced in detail.The application of photo-crosslinking technique in biomedical fields is reviewed in detail,and the prospects for its application are assessed.Currently,most of the photo-crosslinking groups are only sensitive to ultraviolet and visible light,and have weak UV and visible light penetrating power,strong tissue absorption and scattering,which seriously limit the application of this technology in living system.Therefore,further research on the application of photo-crosslinking technology in biological systems and the development of new long-wavelength light-mediated crosslinking( such as near-infrared or far-infrared light) have important scientific significance for drug development and disease theranostics.
Photo-crosslinking technique is widely used in different research fields such as chemistry,biology,medicine and materials as a fast,simple and space-time controlled cross-linking tool.In this paper,the structure,classification and reaction mechanism of commonly used small-molecule photo-crosslinking groups are introduced in detail.The application of photo-crosslinking technique in biomedical fields is reviewed in detail,and the prospects for its application are assessed.Currently,most of the photo-crosslinking groups are only sensitive to ultraviolet and visible light,and have weak UV and visible light penetrating power,strong tissue absorption and scattering,which seriously limit the application of this technology in living system.Therefore,further research on the application of photo-crosslinking technology in biological systems and the development of new long-wavelength light-mediated crosslinking( such as near-infrared or far-infrared light) have important scientific significance for drug development and disease theranostics.
引文
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[3]SUMRANJIT J,CHUNG S J.Recent advances in target characterization and identification by photoaffinity probes[J].Molecules,2013,18(9):10425-40451.
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[5]HATANAKA Y.Development and leading-edge application of innovative photoaffinity labeling[J].Chemical&Pharmaceutical Bulletin,2015,46(1):1-12.
[6]DAS J.Aliphatic diazirines as photoaffinity probes for proteins:recent developments[J].Chemical Reviews,2011,111(8):4405-4417.
[7]ITO Y.Photoimmobilization for microarrays[J].Biotechnology Progress,2006,22(4):924-932.
[8]ZHAO C W,ZHANG Z D,YANG W T.A remote photochemical reaction for surface modification of polymeric substrate[J].Journal of Polymer Science Part A-polymer Chemistry,2012,50(18):3698-3702.
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[10]孟想,杨蕊竹,刘东旭,等.紫外固化型聚合物水凝胶的周期图案形成及其调控[J].中国光学,2012,5(4):436-443.MENG X,YANG R ZH,LIU D X,et al..Formation and adjustment of cycle pattern of UV-curable polymeric hydeogel[J].Chinese Optics,2012,5(4):436-443.(in Chinese)
[11]刘东旭,夏虹,孙允陆,等.飞秒激光直写生物凝胶模板原位合成纳米粒子[J].中国光学,2014,7(4):608-615.LIU D X,XIA H,SUN Y L,et al..Femtosecond laser direct writing bio-gel template for in situ synthesis of nanoparticles[J].Chinese Optics,2014,7(4):608-615.(in Chinese)
[12]FLEMING S A.Chemical reagents in photoaffinity labeling[J].Tetrahedron,1995,51(46):12479-12520.
[13]BORDEN W T,GRITSAN N P,HADAD C M,et al..The interplay of theory and experiment in the study of phenylnitrene[J].Accounts of Chemical Research,2000,33(11):765-771.
[14]PLATZ M S.Comparison of phenylcarbene and phenyinitrene[J].Accounts of Chemical Research,1995,28(12):487-492.
[15]BLENCOWE A,HAYES W.Development and application of diazirine in biological and synthetic macromolecular systems[J].Soft Matter,2005,1(3):178-205.
[16]AMBROZ H B,KEMP T J.Aryl cation-new light on old intermediates[J].Chemical Society Reviews,1979,8(3):353-365.
[17]KOTZYBA-HIBERT F,KAPFER I,GOELDNER M.Recent trends in photoaffinity labeling[J].Angewandte Chemie International Edition,1995,34(12):1296-1312.
[18]DORMAN G,PRESTWICH G D.Benzophenone photophores in biochemistry[J].Biochemistry,1994,33(19):5661-5673.
[19]DORMAN G,PRESTWICH G D,ELLIOTT J T,et al..Benzophenone photoprobes for phosphoinositides,peptides and drugs[J].Photochem Photobiol,1997,65(22):222-234.
[20]AGARWAL S,BELL C M,ROTHBART S B,et al..AMP-activated Protein Kinase(AMPK)Control of m TORC1 Is p53-and TSC2-independent in pemetrexed-treated carcinoma cells[J].Journal of Biological Chemistry,2015,290(46):27473-27486.
[21]BRODIE N I,MAKEPEACE K A T,PETROTCHENKO E V,et al..Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure[J].Journal of Proteomics,2015,118:12-20.
[22]YABE T,HOSODA-YABE R,SAKAI H,et al..Development of a photoreactive probe-based system for detecting heparin[J].Analytical Biochemistry,2015,472:1-6.
[23]GUO H J,LI Z Q.Developments of bioorthogonal handle-containing photo-crosslinkers for photoaffinity labeling[J].Med.Chem.Commun.,2017,8(8):1585-1591.
[24]FUNG S K,ZOU T T,CAO B,et al..Cyclometalated gold(Ⅲ)complexes containing N-Heterocyclic carbene ligands engage multiple anti-cancer molecular targets[J].Angewandte Chemie International Edition,2017,56(14):3892-3896.
[25]SCHWANSTECHER M,LSER S,CHUDZIAK F,et al..Identification of a 38-k Da high affinity sulfonylurea-binding peptide in insulin-secreting cells and cerebral cortex[J].Journal of Biological Chemistry,1994,269(27):17768-17771.
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[27]ROTH M,CHEN W Y.Sorting out functions of sirtuins in cancer[J].Oncogene,2014,33(13):1609-1620.
[28]SEIFERT T,MALO M,LENGQVIST J,et al..Identification of the binding site of chroman-4-one-based sirtuin 2-selective inhibitors using photoaffinity labeling in combination with tandem mass spectrometry[J].Journal of Medicinal Chemistry,2016,59(23):10794-10799.
[29]LIU K,SHI H B,XIAO H G,et al..Functional profiling,identification and inhibition of plasmepsins in intraerythrocytic malaria parasites[J].Angewandte Chemie International Edition,2009,48(44):8293-8297.
[30]SHI H B,LIU K,XU A,et al..Small molecule microarray-facilitated screening of affinity-based probes(Af BPs)forγ-secretase[J].Chemical Communications,2009,33(33):5030-5032.
[31]SHI H B,ZHANG C J,CHEN G Y,et al..Cell-based proteome profiling of potential dasatinib targets by use of affinitybased probes[J].Journal of the American Chemical Society,2012,134(6):3001-3014.
[32]SHI H B,CHENG X M,YAO S Q,et al..Proteome profiling reveals potential cellular targets of staurosporine using a clickable cell-permeable probe[J].Chemical Communications,2011,47(40):11306-11308.
[33]LI Z Q,HAO P L,LI L,et al..Design and synthesis of minimalist terminal alkyne-containing diazirine photo-crosslinkers and their incorporation into kinase inhibitors for cell-and tissue-based proteome profiling[J].Angewandte Chemie International Edition,2013,52(33):8551-8556.
[34]LI Z Q,WANG D Y,LI L,et al..“Minimalist”cyclopropene-containing photo-cross-linkers suitable for live-cell imaging and affinity-based protein labeling[J].Journal of the American Chemical Society,2014,136(28):9990-9998.
[35]LI Z Q,QIAN L H,YAO S Q,et al..Tetrazole photoclick chemistry:reinvestigating its suitability as a bioorthogonal reaction and potential applications[J].Angewandte Chemie International Edition,2016,55(6):2002-2006.
[36]YU S H,BOYCE M,WANDS A M,et al..Metabolic labeling enables selective photocrosslinking of O-Glc NAc-modified proteins to their binding partners[J].Proceedings of the National Academy of Sciences of the United States of America,2012,109(13):4834-4839.
[37]KRISHNAMURTHY M,DUGAN A,NWOKOYE A,et al..Caught in the act:covalent crosslinking captures activator-coactivator interactions in vivo[J].ACS Chemical Biology,2016,6(12):1321-1326.
[38]SONG C X,HE C.Bioorthogonal labeling of 5-hydroxymethylcytosine in genomic DNA and diazirine-based DNA photocross-linking probes[J].Accounts of Chemical Research,2011,44(9):709-717.
[39]AND Y T,KOHLER J J.Photoactivatable crosslinking sugars for capturing glycoprotein interactions[J].Journal of the American Chemical Society,2008,130(11):3278-3279.
[40]BOND M R,WHITMAN C M,KOHLER J J.Metabolically incorporated photocrosslinking sialic acid covalently captures a ganglioside-protein complex[J].Molecular Biosystems,2010,6(10):1796-1799.
[41]YU D,WOWOR A J,COLE J L,et al..Defining the Escherichia coli Sec A dimer interface residues through in vivo sitespecific photo-cross-linking[J].Journal of Bacteriology,2013,195(12):2817-2825.
[42]ZHANG M,LIN S,SONG X,et al..A genetically incorporated crosslinker reveals chaperone cooperation in acid resistance[J].Nature Chemical Biology,2011,7(10):671-677.
[43]LIN S,HE D,LONG T,et al..Genetically encoded cleavable protein photo-cross-linker[J].Journal of the American Chemical Society,2014,136(34):11860-11863.
[44]YANG Y,SONG H P,HE D,et al..Genetically encoded protein photocrosslinker with a transferable mass spectrometry-identifiable label[J].Nature Communications,2016,DOI:10.1038/ncomms12299.
[45]YAN H,ZHONG G,X U G,et al..Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus[J].Elife,2012,1(1):e00049-e00049.
[46]SHIGDEL U K,ZHANG J L,HE C.Diazirine-based DNA photo-cross-linking probes for the study of protein DNA interactions[J].Angewandte Chemie International Edition,2008,47(1):90-93.
[47]QIU Z H,LU L H,JIAN X,HE C.A diazirine-based nucleoside analogue for efficient DNA interstrand photocross-linking[J].Journal of the American Chemical Society,2008,130(44):14398-14399.
[48]NAKAMOTO K,UENO Y.Diazirine-containing RNA photo-cross-linking probes for capturing microRNA targets[J].The Journal of Organic Chemistry,2014,79(6):2463-2472.
[49]YAN M D,REN J.Covalent immobilization of ultrathin polymer films by thermal activation of perfluorophenyl azide[J].Chemistry of Materials,2004,16(9):1627-1632.
[50]LIU L,ENGELHARD M H,YAN M D.Surface and interface control on photochemically initiated immobilization[J].Journal of the American Chemical Society,2006,128(43):14067-14072.
[51]LIU L H,YAN M D.Functionalization of pristine graphene with perfluorophenyl azides[J].Journal of Materials Chemistry,2011,21(10):3273-3276.
[52]PARK J,JAYAWARDENA S N,CHEN X,et al..A general method for the fabrication of grapheme-nanoparticle hybrid material[J].Chemical Communications,2015,51(14):2882-2885.
[53]ISMAILI H,LEE S,WORKENTIN M S.Diazirine-modified gold nanoparticle:template for efficient photoinduced interfacial carbene insertion reactions[J].Langmuir,2010,26(18):14958-14964.
[54]ISMAILI H,LAGUGNE-LABARTHET F,WORKENTIN M S.Covalently assembled gold nanoparticle-carbon nanotube hybrids via a photoinitiated carbene addition reaction[J].Chemistry of Materials,2011,23(6):1519-1525.
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