基于果实和果肉细胞特征的辣椒资源相关性和聚类分析
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摘要
【目的】研究不同辣椒资源各调查性状间的相关性和聚类分群,为适宜新疆制干辣椒品种选育步改良奠定一定的基础。【方法】以24份辣椒高代自交系为材料,通过果实主要性状、果肉细胞主要结构特征和损耗75%水分需要的耗时调查,对所调查性状进行相关性和聚类分析。【结果】各调查性状间存在不同程度的显著或极显著正负相关,相关系数介于-0.625~(**)～0.976~(**)。利用欧式距离,类平均法可将24份辣椒资源分为五大类,第Ⅰ大类包含8份材料,第Ⅱ大类包含6份,第Ⅲ大类包含3份,第Ⅳ大类均仅包含6份材料,第Ⅴ大类仅包含1份材料,这份材料具独特性。【结论】辣椒遗传多样性丰富,沥干时间(损耗75%水分需要的耗时)仅与腔室面积占比存在显著负相关。
【Objective】 The aim of this paper is to study the correlation and cluster of different characters in different pepper resources and lay a foundation for the further improvement of Xinjiang dry pepper varieties.【Method】The 24 pepper advanced self-line germplasm resources were employed in this paper to evaluate the main fruit's traits, the main characteristic of the pulp cells structure and the time-consuming of the fruit losing 75% water. Thereafter, the correlation and cluster analysis was implemented to the entire characteristic. 【Result】The results showed that the positive and negative significance correlation existed among the characteristics, and the correlation coefficient ranged from-0.625~(** )to 0.976~(**). Furthermore, 24 pepper germplasm resources were divided into five groups by euclidean distance UPGMA method. The first group included 8 lines, the second group included six lines, the third group included three lines, the fourth group included six lines, and the fifth group only included one line which implied the peculiarity of this line.【Conclusion】Pepper is rich in genetic diversity. The draining time(time required for 75% water loss) was only negatively correlated with the proportion of the chamber area.
【Objective】 The aim of this paper is to study the correlation and cluster of different characters in different pepper resources and lay a foundation for the further improvement of Xinjiang dry pepper varieties.【Method】The 24 pepper advanced self-line germplasm resources were employed in this paper to evaluate the main fruit's traits, the main characteristic of the pulp cells structure and the time-consuming of the fruit losing 75% water. Thereafter, the correlation and cluster analysis was implemented to the entire characteristic. 【Result】The results showed that the positive and negative significance correlation existed among the characteristics, and the correlation coefficient ranged from-0.625~(** )to 0.976~(**). Furthermore, 24 pepper germplasm resources were divided into five groups by euclidean distance UPGMA method. The first group included 8 lines, the second group included six lines, the third group included three lines, the fourth group included six lines, and the fifth group only included one line which implied the peculiarity of this line.【Conclusion】Pepper is rich in genetic diversity. The draining time(time required for 75% water loss) was only negatively correlated with the proportion of the chamber area.
引文
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[2] Kim,S.,Park,M.,Yeom,S-I.,Kim,Y-M.,Lee,J.M.,& Hyun-Ah,Lee,H-A.,et al.(2016).Genome sequence of the hot pepper provides insights into the evolution of pungency in capsicum species.Nature Genetics,46(3):270-278.
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[6] Wahyuni,Y.,Ballester,A.R.,Sudarmonowati,E.,Bino,R.J.,& Bovy,A.G.,(2011).Metabolite biodiversity in pepper (capsicum) fruits of thirty-two diverse accessions:variation in health-related compounds and implications for breeding.Phytochemistry,72(11-12),1,358-1,370.
[7] 李宁,杨涛,帕提古丽,等.适于新疆制干类型辣椒种质资源遗传多样性的SRAP和SCoT分析[J].分子植物育种,2017,15(8):3 331-3 340.LI Ning,YANG Tao,Patiguli,et al.(2017).Genetic Diversity Analysis of Xinjiang Dried-Orientation Type Pepper by SRAP and SCoT [J].Molecular Plant Breeding,15(8):3,331-3,340.(in Chinese)
[8] 杨生保,李宁,杨涛,等.基于SSR 标记的制干辣椒品种资源遗传多样性分析[J].分子植物育种,2015,13 (4):840-845.YANG Sheng-bao,LI Ning,YANG Tao,et al.(2015).Genetic Diversity of Dried-Orientation Pepper Cultivars Revealed by SSR Marker[J].Molecular Plant Breeding,13 (4):840-845.(in Chinese)
[9] 耿三省,陈斌,张晓芬,等.我国辣椒育种动态及市场品种分布概况[J].辣椒杂志,2011,(3):1-4.GENG San - sheng,CHEN Bin,ZHANG Xiao fen,et al.(2011).Hot pepperbreeding development and its varieties'distribution in China [J].Journal of China Capsicum,(3):1-4.(in Chinese)
[10] 王立浩,张正海,曹亚从,等."十二五"我国辣椒遗传育种研究进展及其展望[J].中国蔬菜,2016,1 (1):1-7.WANG Li - hao,ZHANG Zheng - hai,Cao Ya - cong ,et al.(2016).Research progress and prospect on pepper genetic breeding during China's'Twelfth Five-year Plan'[J].China Vegetables,1 (1):1-7.(in Chinese)
[11] 赵红,曹亚从,张正海,等.我国辣椒核心种质资源园艺性状多样性的分析和评价[J].中国蔬菜,2018,(1):25-34.ZHAO Hong,CAO Ya-cong,ZHANG Zheng - hai,et al.(2018).Analysis and evaluation on diversity of horticultural characters of pepper core collection resources in China [J].China Vegetables,(1):25-34.(in Chinese)
[12] 邹学校,戴雄泽,马艳青,等.湖南辣椒地方品种资源与湘研辣椒品种选育的灰色关联分析[J].植物遗传资源学报,2004,5 (3):233-238.ZOU Xue - xiao,DAI xiong-ze,MA Yan qing,et al.(2004).Grey Relation Grade Analyses for the Local Pepper Cultivars in Hunan and Breeding of Xiangyan Pepper Varieties [J].Journal of Plant Genetic Resources,5 (3):233-238.(in Chinese)
[13] 邹学校,马艳青,戴雄泽,等.湖南辣椒地方品种资源的因子分析及数量分类[J].植物遗传资源学报,2005,6 (1):37-42.ZOU Xue - xiao,MA Yan-qing,DAI Xiong-ze,et al.(2005).Factor Analysis and umerical Taxonomy of Landraces in Hunan [J].Journal of Plant Genetic Resources,6(1):37-42.(in Chinese)
[14] 邹学校,陈文超,张竹青,等.辣椒产量和品质性状Hayman遗传分析[J].园艺学报,2007,34 (3):623-628.ZOU Xue - xiao,CHEN Wen - chao,ZHANG Zhu - qing,et al.(2007).Hayman genetic analysis of yield and quality characters in pepper(Capsicum annuum L.)[J].Acta Horticulturae Sinica,34 (3):623-628.( in Chinese)
[15] 蓬桂华,张爱民,苏丹,等.93份贵州地方辣椒资源品质性状分析[J].植物遗传资源学报,2017,18 (3):429-435.PENG Gui - hua,ZHANG Ai-min,SU Dan ,et al.(2017).Analysis on Quality Characters of 93 Guizhou Local Pepper Germplasm Resources [J].Journal of Plant Genetic Resources,18 (3):429-435.( in Chinese)
[16] 赫卫,张慧,董延龙,等.辣椒种质资源形态学性状相关性、主成分与聚类分析[J].北方园艺,2018,(4):9-17.HE Wei,ZHANG Hui,DONG Yan - long,et al.(2018).Correlation,Principal Component and Cluster Analysis of Morphological Characteristics in Pepper Germplasm Resources[J].Northern Horticulture,(4):9-17.( in Chinese)
[17] 刘峰,王运生,田雪亮,等.辣椒转录组SSR挖掘及其多态性分析[J].园艺学报,2012,39 (1):168-174.LIU Feng,WANG Yun - sheng,TIAN Xue-liang,et al.(2012).SSR mining in pepper(Capsicum annuum L.)transcriptome and the polymorphism analysis[J].Acta Horticulturae Sinica,39 (1):168-174.( in Chinese)
[18] Jung,J.K.,Park,S.W.,Liu,W.Y.,& Kang,B.C.,(2010).Discovery of single nucleotide polymorphism incapsicumand SNP markers for cultivar identification.Euphytica,175(1),91-107.
[19] Uddin,M M.,Khali,l M I.,Hque,M S.,& Meah,B.,Assessment of Genetic Diversity of Chili Cultivars Using RAPD Markers[J].Plant Tissue Cult & Biotech,2012,22 (2):127-136.
[20] Shirasawa,K.,Ishii,K.,Kim,C.,Ban,T.,Suzuki,M.,& Ito,T.,et al.(2013).Development ofcapsicumest-ssr markers for species identification andin silicomapping onto the tomato genome sequence.Molecular Breeding,31(1),101-110.
[21] Maryse Nicola,Mélissa Cantet,Véronique Lefebvre,Sage-Palloix,A.M.,& Palloix,A.,(2013).Genotyping a large collection of pepper (capsicum spp.) with SSR loci brings new evidence for the wild origin of cultivated C.annuum and the structuring of genetic diversity by human selection of cultivar types.Genetic Resources & Crop Evolution,60(8):2,375-2,390.
[22] Hill,T.A.,Hamid,A.,Sebastian,R.C.W.,Jiqiang,Y.,Kevin,S.,& Maria-Jose,T.,et al.(2013).Characterization of capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30k unigene pepper genechip.PLoS ONE,8(2),e56200.
[23] Rai,V.P.,Kumar,R.,Kumar,S.,Rai,A.,Kumar,S.,& Singh,M.,et al.(2013).Genetic diversity in capsicum germplasm based on microsatellite and random amplified microsatellite polymorphism markers.Physiology & Molecular Biology of Plants,19(4):575-586.
[24] 宋文胜,袁丰年,张新贵.新疆制干加工辣椒产业概况及发展趋势[J].辣椒杂志,2010,8 (3):5-8.SONG Wen - sheng,YUAN Feng - nian,ZHANG Xin -gui.(2010).The status quo and development trend of dried-fruit-processing hot pepper industry in Xinjiang [J].Journal of China Capsicum,8 (3):5-8.( in Chinese)
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