基于概率模型的长江口鱼类空间共现模式分析
|
摘要
根据2012—2014年长江口的渔业资源调查数据,采用概率模型、网络分析方法对长江口鱼类群落物种空间共现模式及影响因素进行综合分析。结果表明,长江口鱼类群落模式主要为物种的随机共现,群落构建中以中性元素的影响占主导地位,环境变化驱动的随机因素对种间共现的影响大于种间相互作用;种间共现模式有显著的季节差异,这种季节差异主要与海洋洄游型鱼类和河口定居型鱼类的季节更替有关;高物种权度和中间中心性种类的季节性更替影响种间共现模式的随机性;棘头梅童鱼(Collichthys lucidus)对群落内信息交换的控制能力较强,在长江口鱼类群落中处于核心地位。
Based on the data of fishery resources surveys in the Yangtze River estuary from 2012 to 2014, the spatial co-occurrence patterns and influencing factors of fish communities in that area were analyzed by using probability model and network analysis method. The results show that the fish community pattern in the Yangze River estuary is mainly the random co-occurrence of species.The influence of neutral elements was dominant in community construction, and the effect of random factors driven by environmental change on interspecific co-occurrence was greater than that of interspecific interaction. There was significant seasonal difference in the patterns of interspecific co-occurrence, which was mainly related to the seasonal changes of migratory marine fish and estuarine sediment fish. The seasonal replacement of fish species with high weighted degree and betweenness centrality might also have caused the high number of randomly associated pairs of species. It is also shown that Collikithys lucidus has strong ability to control information exchange within the community and is at the core of the fish community structure in the Yangtze River estuary.
Based on the data of fishery resources surveys in the Yangtze River estuary from 2012 to 2014, the spatial co-occurrence patterns and influencing factors of fish communities in that area were analyzed by using probability model and network analysis method. The results show that the fish community pattern in the Yangze River estuary is mainly the random co-occurrence of species.The influence of neutral elements was dominant in community construction, and the effect of random factors driven by environmental change on interspecific co-occurrence was greater than that of interspecific interaction. There was significant seasonal difference in the patterns of interspecific co-occurrence, which was mainly related to the seasonal changes of migratory marine fish and estuarine sediment fish. The seasonal replacement of fish species with high weighted degree and betweenness centrality might also have caused the high number of randomly associated pairs of species. It is also shown that Collikithys lucidus has strong ability to control information exchange within the community and is at the core of the fish community structure in the Yangtze River estuary.
引文
[1]VEECH J A. A probability-based analysis of temporal and spatial co-occurrence in grassland birds[J]. J Biogeogr, 2006,33(12):2145-2153.
[2]牛克昌,刘怿宁,沈泽昊,等.群落构建的中性理论和生态位理论[J].生物多样性,2009, 17(6):579-593.
[3]MACI S, BASSET A. Composition, structural characteristics and temporal patterns of fish assemblages in non-tidal Mediterranean lagoons:a case study[J]. Estuar Coast Shelf Sci, 2009, 83(4):602-612.
[4]BELL G. The distribution of abundance in neutral communities[J]. Am Nat, 2000, 155(5):606-617.
[5]HUBBELL S P. Neutral theory in community ecology and the hypothesis of functional equivalence[J]. Funct Ecol, 2005, 19(1):166-172.
[6]GRAVEL D, CANHAM C D, BEAUDET M, et al. Reconciling niche and neutrality:the continuum hypothesis[J]. Ecol Lett,2006, 9(4):399-409.
[7]LEIBOLD M A, MCPEEK M A. Coexistence of the niche and neutral perspectives in community ecology[J]. Ecology, 2006,87(6):1399-1410.
[8]GOTELLIN J. Null model analysis of species co-occurrence patterns[J]. Ecology, 2000, 81(9):2606-2621.
[9]PERESNETO P R. Patterns in the co-occurrence of fish species in streams:the role of site suitability, morphology and phylogeny versus species interactions[J]. Oecologia, 2004, 140(2):352-360.
[10]史赞荣,沈新强,王云龙.海湾鱼类群落物种共现机制——以湄洲湾为例[J].中国水产科学,2016, 23(1):169-176.
[11]ECHEVARRIA G, RODRIGUEZ J P. Co-occurrence patterns of fish species in two aquatic habitats of the Arauca River floodplain, Venezuela[J]. Community Ecol, 2017, 18(2):137-148.
[12]VEECH J A. A probabilistic model for analysing species co-occurrence[J]. Global Ecol Biogeogr, 2013, 22(2):252-260.
[13]PROULX S R, PROMISLOW D E, PHILLIPS P C. Network thinking in ecology and evolution[J]. Trends Ecol Evol, 2005,20(6):345-353.
[14]GIRVAN M, NEWMAN M E. Community structure in social and biological networks[J]. Proc Natl Acad Sci USA, 2002, 99(12):7821-7826.
[15]杨涛,单秀娟,金显仕,等.莱州湾鱼类群落的关键种[J].水产学报,2016, 40(10):1613-1623.
[16]WILLIAMS R J, HOWE A, HOFMOCKEL K S. Demonstrating microbial co-occurrence pattern analyses within and between ecosystems[J]. Front Microbiol, 2014, 5:358.
[17]MORUETA-HOLME N, BLONDER B, SANDEL B, et al. A network approach for inferring species associations from co-occurrence data[J]. Ecography(Cop.), 2016, 39(12):1139-1150.
[18]杨刚.长江口鱼类群落结构及其与重要环境因子的相关性[D].上海:上海海洋大学,2012:21-34.
[19]庄平.长江口鱼类[M].上海:上海科学技术出版社,2006:67-389.
[20]GRIFFITH D M, VEECH J A, MARSH C J. Cooccur:probabilistic species co-occurrence analysis in R[J]. J Stat Softw, 2016,69(C2):1-17.
[21]CSARDI G, NEPUSZ T. The igraph software package for complex network research[J]. Int J Complex Syst, 2006:1695.
[22]OPSAHL T, AGNEESSENS F, SKVORETZ J. Node centrality in weighted networks:generalizing degree and shortest paths[J]. Soc Networks, 2010, 32(3):245-251.
[23]OPSAHL T. Structure and evolution of weighted networks[M].London:Queen Mary University of London, 2009:104-122.
[24]BARRAT A, BARTHEELEMY M, PASTOR-SATORRAS R, et al. The architecture of complex weighted networks[J]. Proc Natl Acad Sci USA, 2004, 101(11):3747-3752.
[25]张崇良,陈勇,韩东燕,等.生态模型在渔业管理中的应用[J].海洋学报,2017,39(10):1-18.
[26]PETRY P, BAYLEY P B, MARKLE D F. Relationships between fish assemblages, macrophytes and environmental gradients in the Amazon River floodplain[J]. J Fish Biol, 2003, 63(3):547-579.
[27]LEWIS W M, HAMILTON S K, LASI M A, et al. Ecological determinism on the Orinoco floodplain[J]. Bioscience, 2000, 50(8):681-692.
[28]HOEINGHAUS D J, WINEMILLER K O, BIRNBAUM J S.Local and regional determinants of stream fish assemblage structure:inferences based on taxonomic vs. functional groups[J]. J Biogeogr, 2007, 34(2):324-338.
[29]De AZEVEDO M C, ARAUJO F G, PESSANHA A L M, et al.Co-occurrence of demersal fishes in a tropical bay in southeastern Brazil:a null model analysis[J]. Estuar Coast Shelf Sci, 2006,66(1):315-322.
[30]BARRIO I C, HIK D S, BUENO C G, et al. Extending the stressgradient hypothesis-is competition among animals less common in harsh environments?[J]. Oikos, 2013, 122(4):516-523.
[31]罗秉征,韦晟,窦硕增.长江口鱼类食物网与营养结构的研究[J].海洋科学集刊,1997(1):147-157.
[32]沈新强,史赞荣,晁敏,等.夏、秋季长江口鱼类群落结构[J].水产学报,2011,35(5):700-710.
[33]张衡,全为民,陈渊戈,等.长江口口门区潮下带水域鱼类群落组成的季节变化[J].长江流域资源与环境,2014, 23(11):1534-1539.
[2]牛克昌,刘怿宁,沈泽昊,等.群落构建的中性理论和生态位理论[J].生物多样性,2009, 17(6):579-593.
[3]MACI S, BASSET A. Composition, structural characteristics and temporal patterns of fish assemblages in non-tidal Mediterranean lagoons:a case study[J]. Estuar Coast Shelf Sci, 2009, 83(4):602-612.
[4]BELL G. The distribution of abundance in neutral communities[J]. Am Nat, 2000, 155(5):606-617.
[5]HUBBELL S P. Neutral theory in community ecology and the hypothesis of functional equivalence[J]. Funct Ecol, 2005, 19(1):166-172.
[6]GRAVEL D, CANHAM C D, BEAUDET M, et al. Reconciling niche and neutrality:the continuum hypothesis[J]. Ecol Lett,2006, 9(4):399-409.
[7]LEIBOLD M A, MCPEEK M A. Coexistence of the niche and neutral perspectives in community ecology[J]. Ecology, 2006,87(6):1399-1410.
[8]GOTELLIN J. Null model analysis of species co-occurrence patterns[J]. Ecology, 2000, 81(9):2606-2621.
[9]PERESNETO P R. Patterns in the co-occurrence of fish species in streams:the role of site suitability, morphology and phylogeny versus species interactions[J]. Oecologia, 2004, 140(2):352-360.
[10]史赞荣,沈新强,王云龙.海湾鱼类群落物种共现机制——以湄洲湾为例[J].中国水产科学,2016, 23(1):169-176.
[11]ECHEVARRIA G, RODRIGUEZ J P. Co-occurrence patterns of fish species in two aquatic habitats of the Arauca River floodplain, Venezuela[J]. Community Ecol, 2017, 18(2):137-148.
[12]VEECH J A. A probabilistic model for analysing species co-occurrence[J]. Global Ecol Biogeogr, 2013, 22(2):252-260.
[13]PROULX S R, PROMISLOW D E, PHILLIPS P C. Network thinking in ecology and evolution[J]. Trends Ecol Evol, 2005,20(6):345-353.
[14]GIRVAN M, NEWMAN M E. Community structure in social and biological networks[J]. Proc Natl Acad Sci USA, 2002, 99(12):7821-7826.
[15]杨涛,单秀娟,金显仕,等.莱州湾鱼类群落的关键种[J].水产学报,2016, 40(10):1613-1623.
[16]WILLIAMS R J, HOWE A, HOFMOCKEL K S. Demonstrating microbial co-occurrence pattern analyses within and between ecosystems[J]. Front Microbiol, 2014, 5:358.
[17]MORUETA-HOLME N, BLONDER B, SANDEL B, et al. A network approach for inferring species associations from co-occurrence data[J]. Ecography(Cop.), 2016, 39(12):1139-1150.
[18]杨刚.长江口鱼类群落结构及其与重要环境因子的相关性[D].上海:上海海洋大学,2012:21-34.
[19]庄平.长江口鱼类[M].上海:上海科学技术出版社,2006:67-389.
[20]GRIFFITH D M, VEECH J A, MARSH C J. Cooccur:probabilistic species co-occurrence analysis in R[J]. J Stat Softw, 2016,69(C2):1-17.
[21]CSARDI G, NEPUSZ T. The igraph software package for complex network research[J]. Int J Complex Syst, 2006:1695.
[22]OPSAHL T, AGNEESSENS F, SKVORETZ J. Node centrality in weighted networks:generalizing degree and shortest paths[J]. Soc Networks, 2010, 32(3):245-251.
[23]OPSAHL T. Structure and evolution of weighted networks[M].London:Queen Mary University of London, 2009:104-122.
[24]BARRAT A, BARTHEELEMY M, PASTOR-SATORRAS R, et al. The architecture of complex weighted networks[J]. Proc Natl Acad Sci USA, 2004, 101(11):3747-3752.
[25]张崇良,陈勇,韩东燕,等.生态模型在渔业管理中的应用[J].海洋学报,2017,39(10):1-18.
[26]PETRY P, BAYLEY P B, MARKLE D F. Relationships between fish assemblages, macrophytes and environmental gradients in the Amazon River floodplain[J]. J Fish Biol, 2003, 63(3):547-579.
[27]LEWIS W M, HAMILTON S K, LASI M A, et al. Ecological determinism on the Orinoco floodplain[J]. Bioscience, 2000, 50(8):681-692.
[28]HOEINGHAUS D J, WINEMILLER K O, BIRNBAUM J S.Local and regional determinants of stream fish assemblage structure:inferences based on taxonomic vs. functional groups[J]. J Biogeogr, 2007, 34(2):324-338.
[29]De AZEVEDO M C, ARAUJO F G, PESSANHA A L M, et al.Co-occurrence of demersal fishes in a tropical bay in southeastern Brazil:a null model analysis[J]. Estuar Coast Shelf Sci, 2006,66(1):315-322.
[30]BARRIO I C, HIK D S, BUENO C G, et al. Extending the stressgradient hypothesis-is competition among animals less common in harsh environments?[J]. Oikos, 2013, 122(4):516-523.
[31]罗秉征,韦晟,窦硕增.长江口鱼类食物网与营养结构的研究[J].海洋科学集刊,1997(1):147-157.
[32]沈新强,史赞荣,晁敏,等.夏、秋季长江口鱼类群落结构[J].水产学报,2011,35(5):700-710.
[33]张衡,全为民,陈渊戈,等.长江口口门区潮下带水域鱼类群落组成的季节变化[J].长江流域资源与环境,2014, 23(11):1534-1539.