基于简化基因组测序开发垂穗披碱草(Elymus nutans)SSR标记
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  • 英文篇名:Development of SSR Markers in Elymus nutans Based on Reduced-Representation Genome Sequencing
  • 作者:刘瑞娟 ; 路兴旺 ; 窦全文
  • 英文作者:Liu Ruijuan;Lu Xingwang;Dou Quanwen;Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences;University of Chinese Academy of Sciences;Key Laboratory of Crop Molecular Breeding, Qinghai Province, Northwest Institute of Plateau Biology, Chinese Academy of Sciences;
  • 关键词:垂穗披碱草 ; SSR ; 简化基因组测序
  • 英文关键词:Elymus nutans;;SSR;;Reduced-representation genome sequencing
  • 中文刊名:FZZW
  • 英文刊名:Molecular Plant Breeding
  • 机构:中国科学院西北高原生物研究所中国科学院高原生物适应与进化重点实验室;中国科学院大学;中国科学院西北高原生物研究所青海省作物分子育种重点实验室;
  • 出版日期:2018-03-28
  • 出版单位:分子植物育种
  • 年:2018
  • 期:v.16
  • 基金:青海省自然科学基金项目(2015-ZJ-903);; 青海省创新平台建设专项项目;; 青海省作物分子育种重点实验室(2017-ZJ-Y14)共同资助
  • 语种:中文;
  • 页:FZZW201806029
  • 页数:7
  • CN:06
  • ISSN:46-1068/S
  • 分类号:178-184
摘要
垂穗披碱草为青藏高原重要生态草及优质多年生牧草。本研究中,通过简化基因组测序技术筛选和鉴定得到了14个多态性的垂穗披碱草基因组SSR标记。14个SSR标记在24个不同垂穗披碱草个体中等位基因数变化范围为2~5,平均每个位点的等位基因数为2.9。近缘种扩增结果显示分别有14对和9对引物在老芒麦和鹅观草属物种中有目标产物扩增,表明14个SSR标记中5个可能是H基因组特异性标记,其余9个可能来自St组或Y组。这些新开发的SSR标记,今后可应用于垂穗披碱草及其近缘种的遗传多样性研究等领域。同时就利用简化基因组测序技术开发SSR标记的效率进行了讨论。
        Elymus nutans is an important perennial grass used both for ecological protection and forage in Qinghai-Tibet plateau. In this study, we isolated and characterized 14 novel polymorphic genomic simple sequence repeat(SSR) markers in E. nutans by Reduced-Representation Genome Sequencing(RRGS). The variation range of allele number of 14 SSR markers in 24 E. nutans individuals was between 2 and 5, with an average of 2.9 alleles per SSR. Amplification of relative species showed that 14 and 9 of the markers could be effectively amplified in E. sibiricus and Roegneria species, respectively. This result indicated that 5 of the 14 SSR markers might be H genome-specific markers, and the remaining 9 might be from St genome or Y genome. These newly developed polymorphic SSR markers could be used in the genetic diversity areas of E. nutans and its related species. And the efficiency of developing SSR markers using RRGS was also discussed.
引文
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