DNA条形码在农用动物中的应用
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摘要
DNA条形码技术作为近年来分子标记研究的热点,发展十分迅速,但在农用动物中的应用的相关报道还很少见。本文通过对DNA条形码的发展历程、原理和技术流程及其在肉类等鉴定中的应用等方面阐述了DNA条形码在农用动物中应用的前景和局限性,为农用动物的鉴定提供了新的思路和方法。
In recent years,DNA barcoding is developing very rapidly as a molecular marker,but its application in farm animals are still few reports. This paper reviews the prospects and limitations of DNA barcoding in farm animals,through the development,principle and technical process of DNA barcoding and its application in maet. It provides a new thought and methed for the identification of the farm animals.
In recent years,DNA barcoding is developing very rapidly as a molecular marker,but its application in farm animals are still few reports. This paper reviews the prospects and limitations of DNA barcoding in farm animals,through the development,principle and technical process of DNA barcoding and its application in maet. It provides a new thought and methed for the identification of the farm animals.
引文
[1]莫帮辉,屈莉,韩松,等.DNA条形码识别Ⅰ.DNA条形码研究进展及应用前景[J].四川动物,2008,27(2):303-306.
[2]Hawksworth D L.Challenges in mycology.[J].Mycological Research,1995,99(1):127-128.
[3]任保青,陈之端.植物DNA条形码技术[J].植物学报,2010,45(1):1-12.
[4]Nanney D L.Genes and Phenes in Tetrahymena[J].Bio Science,1982,32(10):783-788.
[5]Floyd R,Abebe E,Papert A,et al.Molecular barcodes for soil nematode identification[J].Molecular Ecology,2002,11(4):839-850.
[6]Eggert L S,Woodruff D S.The evolution and phylogeography of the African elephant inferred from mitochondrial DNA sequence and nuclear microsatellite markers.[J].Proceedings of the Royal Society B Biological Sciences,2002,269(1504):1993-2006.
[7]Shapiro B,Sibthorpe D,Rambaut A,et al.Flight of the dodo.[J].Science,2002,295(5560):1683-1683.
[8]Hebert P D,Cywinska A,Ball S L,et al.Biological identifications through DNA barcodes[J].Proceedings Biological Sciences,2003,270(1512):313-321.
[9]Jinbo U,Kato T,Ito M.Current progress in DNA barcoding and future implications for entomology[J].Entomological Science,2011,14(2):107-124.
[10]裴男才,陈步峰.生物DNA条形码:十年发展历程、研究尺度和功能[J].生物多样性,2013,21(5):616-627.
[11]徐武杰,汪雁,邹节新,等.DNA条形码及其在寄生虫学中的应用[J].中国人兽共患病学报,2015,31(4):365-370.
[12]陈领,胡景杰,陈越,等.国家自然科学基金委员会重大项目“动物DNA条形码基因和隐存多样性的研究”通过评审论证[J].生命科学,2011(3):231-233.
[13]Hubert N,Hanner R,Holm E,et al.Identifying Canadian freshwater fishes through DNA barcodes.[J].Plos One,2008,3(6):e2490.
[14]Hu M,Chilton N B,Zhu X,et al.Single-strand conformation polymorphism-based analysis of mitochondrial cytochrome c,oxidase subunit 1 reveals significant substructuring in hookworm populations[J].Electrophoresis,2002,23(1):27-34.
[15]Hajibabaei M,Singer G A C,Hebert P D N,et al.DNA barcoding:how it complements taxonomy,molecular phylogenetics and population genetics[J].Trends in Genetics,2007,23(4):167-172.
[16]高连明.DNA条形码在生物多样性编目与评价中的应用[J].生物多样性,2015,23(3):286-287.
[17]雷富民,杨岚.中国鸟类的DNA分类及系统发育研究概述[J].动物分类学报,2009,34(2):309-315.
[18]吕冬梅,黄原,文慧,等.DNA条形码技术在食品鉴定中的应用[J].食品科学,2015,36(9):248-253.
[19]欧阳解秀,王立贤.DNA条形码技术在地方猪种质资源保护中的应用[J].农业生物技术学报,2013,21(3):348-354.
[20]Parchami N F,Tafvizi F,Tajabadi E M,et al.Optimization of multiplex PCR for the identification of animal species using mitochondrial genes in sausages[J].European Food Research and Technology,2014,239(3):533-541.
[21]Zhang J,Zhang X,Dediu L,et al.Review of the current application of fingerprinting allowing detection of food adulteration and fraud in China[J].Food Control,2011,22(8):1126-1135.
[22]Kesmen,Z,Yeti6)m,H,Sahi6)n,F.Identification of different meat species used in sucuk production by pcr assay[J].GIDAJournal of Food 2010,35(2):81-87.
[23]高敬,魏迪,张癸荣,等.常见肉类鉴别技术研究进展[J].食品科学,2014,35(11):356-360.
[24]王爽,李永波,马超峰,等.DNA条形码COI序列在常见肉类鉴别中的应用研究[J].现代食品科技,2016(1):188-193.
[25]田晨曦,周巍,王爽,等.基于DNA条形码技术常见肉类掺假鉴别技术的研究[J].现代食品科技,2016(8):295-301.
[26]Kitpipit T,Sittichan K,Thanakiatkrai P.Direct-multiplex PCR assay for meat species identification in food products.[J].Food Chemistry,2014,163(3):77-82.
[27]Kane D E,Hellberg R S.Identification of species in ground meat products sold on the U.S.commercial market using DNA-based methods[J].Food Control,2015,59:158-163.
[28]Haider N,Nabulsi I,Al-Safadi B.Identification of meat species by PCR-RFLP of the mitochondrial COI,gene[J].Meat Science,2012,90(2):490-493.
[29]石林春,姚辉,谢丽芳,等.中国动物药材DNA条形码数据库[J].中国中药杂志,2014,39(12):2155-2159.
[30]许亮,谷丽艳,赵丹玉,等.DNA条形码(DNA barcoding)用于动物类中药鉴定的应用与展望[J].中国实验方剂学杂志,2010,16(14):229-231.
[31]李世平,常洪,马国龙,等.利用细胞色素b基因全序列分析研究大额牛的母系起源与分类地位[J].江苏农业科学,2007(5):125-128.
[32]任轶,冯慧,冯成利,等.应用线粒体DNA序列探讨羚牛分类地位[J].基因组学与应用生物学,2012,(5):481-484.
[33]Alfonsi E,Méheust E,Fuchs S,et al.The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast[J].Zookeys,2013,20(365):5-24.
[34]Cai YS,Zhang L,Shen F J,et al.DNA barcoding of 18 species of Bovidae[J].Science Bulletin,2011,56(2):164-168.
[35]廖俊,应孟周,张晓芹,等.DNA条形码技术及其在畜牧产品中的应用前景[J].农民致富之友,2014(2):252-253.
[36]田应峰,王东林,苗永旺.DNA条形码技术及其在畜牧兽医上的应用[J].上海畜牧兽医通讯,2016,(5):47-50.
[37]Meloni D,Sanciu G,Poirier P,et al.Molecular subtyping of Blastocystis,sp.isolates from symptomatic patients in Italy[J].Parasitology Research,2011,109(3):613-619.
[38]Verkaar E L,Nijman I J,Boutaga K,et al.Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA.[J].Meat Science,2002,60(4):365-369.
[39]Francis C M,Borisenko A V,Ivanova N V,et al.The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia.[J].Plos One,2016,5(9):e12575-e12575.
[40]谢莉萍,徐广锐,谢军,等.应用PCR方法鉴别猪肉和牛肉[J].生物学通报,2015,50(6):47-49.
[41]Safdar M,Junejo Y.A multiplex-conventional PCR assay for bovine,ovine,caprine and fish species identification in feedstuffs:Highly sensitive and specific[J].Food Control,2014,50:190-194.
[42]石丰运,缪建锟,张利平,等.运用基因芯片技术检测牛、山羊、猪和鸡源性成分[J].生物工程学报,2010,26(6):823-829.
[43]胡培丽,岳秉飞.单核苷酸多态性的研究进展[J].实验动物科学,2006,23(1):36-38.
[44]邱德义,胡佳,刘德星,等.DNA条形码技术在肉品防欺诈鉴别中的应用[J].肉类研究,2013,27(4):40-43.
[45]Folmer O,Black M,Hoeh W,et al.DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.[J].Molecular Marine Biology&Biotechnology,1994,3(5):294-299.
[46]Smith V S.DNA barcoding:perspectives from a“Partnerships for Enhancing Expertise in Taxonomy”(PEET)debate.[J].Systematic Biology,2005,54(5):841-844.
[47]Hebert P D,Penton E H,Burns J M,et al.Ten species in one:DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.[J].Proceedings of the National Academy of Sciences of the United States of America,2004,101(41):14812-14817.
[2]Hawksworth D L.Challenges in mycology.[J].Mycological Research,1995,99(1):127-128.
[3]任保青,陈之端.植物DNA条形码技术[J].植物学报,2010,45(1):1-12.
[4]Nanney D L.Genes and Phenes in Tetrahymena[J].Bio Science,1982,32(10):783-788.
[5]Floyd R,Abebe E,Papert A,et al.Molecular barcodes for soil nematode identification[J].Molecular Ecology,2002,11(4):839-850.
[6]Eggert L S,Woodruff D S.The evolution and phylogeography of the African elephant inferred from mitochondrial DNA sequence and nuclear microsatellite markers.[J].Proceedings of the Royal Society B Biological Sciences,2002,269(1504):1993-2006.
[7]Shapiro B,Sibthorpe D,Rambaut A,et al.Flight of the dodo.[J].Science,2002,295(5560):1683-1683.
[8]Hebert P D,Cywinska A,Ball S L,et al.Biological identifications through DNA barcodes[J].Proceedings Biological Sciences,2003,270(1512):313-321.
[9]Jinbo U,Kato T,Ito M.Current progress in DNA barcoding and future implications for entomology[J].Entomological Science,2011,14(2):107-124.
[10]裴男才,陈步峰.生物DNA条形码:十年发展历程、研究尺度和功能[J].生物多样性,2013,21(5):616-627.
[11]徐武杰,汪雁,邹节新,等.DNA条形码及其在寄生虫学中的应用[J].中国人兽共患病学报,2015,31(4):365-370.
[12]陈领,胡景杰,陈越,等.国家自然科学基金委员会重大项目“动物DNA条形码基因和隐存多样性的研究”通过评审论证[J].生命科学,2011(3):231-233.
[13]Hubert N,Hanner R,Holm E,et al.Identifying Canadian freshwater fishes through DNA barcodes.[J].Plos One,2008,3(6):e2490.
[14]Hu M,Chilton N B,Zhu X,et al.Single-strand conformation polymorphism-based analysis of mitochondrial cytochrome c,oxidase subunit 1 reveals significant substructuring in hookworm populations[J].Electrophoresis,2002,23(1):27-34.
[15]Hajibabaei M,Singer G A C,Hebert P D N,et al.DNA barcoding:how it complements taxonomy,molecular phylogenetics and population genetics[J].Trends in Genetics,2007,23(4):167-172.
[16]高连明.DNA条形码在生物多样性编目与评价中的应用[J].生物多样性,2015,23(3):286-287.
[17]雷富民,杨岚.中国鸟类的DNA分类及系统发育研究概述[J].动物分类学报,2009,34(2):309-315.
[18]吕冬梅,黄原,文慧,等.DNA条形码技术在食品鉴定中的应用[J].食品科学,2015,36(9):248-253.
[19]欧阳解秀,王立贤.DNA条形码技术在地方猪种质资源保护中的应用[J].农业生物技术学报,2013,21(3):348-354.
[20]Parchami N F,Tafvizi F,Tajabadi E M,et al.Optimization of multiplex PCR for the identification of animal species using mitochondrial genes in sausages[J].European Food Research and Technology,2014,239(3):533-541.
[21]Zhang J,Zhang X,Dediu L,et al.Review of the current application of fingerprinting allowing detection of food adulteration and fraud in China[J].Food Control,2011,22(8):1126-1135.
[22]Kesmen,Z,Yeti6)m,H,Sahi6)n,F.Identification of different meat species used in sucuk production by pcr assay[J].GIDAJournal of Food 2010,35(2):81-87.
[23]高敬,魏迪,张癸荣,等.常见肉类鉴别技术研究进展[J].食品科学,2014,35(11):356-360.
[24]王爽,李永波,马超峰,等.DNA条形码COI序列在常见肉类鉴别中的应用研究[J].现代食品科技,2016(1):188-193.
[25]田晨曦,周巍,王爽,等.基于DNA条形码技术常见肉类掺假鉴别技术的研究[J].现代食品科技,2016(8):295-301.
[26]Kitpipit T,Sittichan K,Thanakiatkrai P.Direct-multiplex PCR assay for meat species identification in food products.[J].Food Chemistry,2014,163(3):77-82.
[27]Kane D E,Hellberg R S.Identification of species in ground meat products sold on the U.S.commercial market using DNA-based methods[J].Food Control,2015,59:158-163.
[28]Haider N,Nabulsi I,Al-Safadi B.Identification of meat species by PCR-RFLP of the mitochondrial COI,gene[J].Meat Science,2012,90(2):490-493.
[29]石林春,姚辉,谢丽芳,等.中国动物药材DNA条形码数据库[J].中国中药杂志,2014,39(12):2155-2159.
[30]许亮,谷丽艳,赵丹玉,等.DNA条形码(DNA barcoding)用于动物类中药鉴定的应用与展望[J].中国实验方剂学杂志,2010,16(14):229-231.
[31]李世平,常洪,马国龙,等.利用细胞色素b基因全序列分析研究大额牛的母系起源与分类地位[J].江苏农业科学,2007(5):125-128.
[32]任轶,冯慧,冯成利,等.应用线粒体DNA序列探讨羚牛分类地位[J].基因组学与应用生物学,2012,(5):481-484.
[33]Alfonsi E,Méheust E,Fuchs S,et al.The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast[J].Zookeys,2013,20(365):5-24.
[34]Cai YS,Zhang L,Shen F J,et al.DNA barcoding of 18 species of Bovidae[J].Science Bulletin,2011,56(2):164-168.
[35]廖俊,应孟周,张晓芹,等.DNA条形码技术及其在畜牧产品中的应用前景[J].农民致富之友,2014(2):252-253.
[36]田应峰,王东林,苗永旺.DNA条形码技术及其在畜牧兽医上的应用[J].上海畜牧兽医通讯,2016,(5):47-50.
[37]Meloni D,Sanciu G,Poirier P,et al.Molecular subtyping of Blastocystis,sp.isolates from symptomatic patients in Italy[J].Parasitology Research,2011,109(3):613-619.
[38]Verkaar E L,Nijman I J,Boutaga K,et al.Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA.[J].Meat Science,2002,60(4):365-369.
[39]Francis C M,Borisenko A V,Ivanova N V,et al.The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia.[J].Plos One,2016,5(9):e12575-e12575.
[40]谢莉萍,徐广锐,谢军,等.应用PCR方法鉴别猪肉和牛肉[J].生物学通报,2015,50(6):47-49.
[41]Safdar M,Junejo Y.A multiplex-conventional PCR assay for bovine,ovine,caprine and fish species identification in feedstuffs:Highly sensitive and specific[J].Food Control,2014,50:190-194.
[42]石丰运,缪建锟,张利平,等.运用基因芯片技术检测牛、山羊、猪和鸡源性成分[J].生物工程学报,2010,26(6):823-829.
[43]胡培丽,岳秉飞.单核苷酸多态性的研究进展[J].实验动物科学,2006,23(1):36-38.
[44]邱德义,胡佳,刘德星,等.DNA条形码技术在肉品防欺诈鉴别中的应用[J].肉类研究,2013,27(4):40-43.
[45]Folmer O,Black M,Hoeh W,et al.DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.[J].Molecular Marine Biology&Biotechnology,1994,3(5):294-299.
[46]Smith V S.DNA barcoding:perspectives from a“Partnerships for Enhancing Expertise in Taxonomy”(PEET)debate.[J].Systematic Biology,2005,54(5):841-844.
[47]Hebert P D,Penton E H,Burns J M,et al.Ten species in one:DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.[J].Proceedings of the National Academy of Sciences of the United States of America,2004,101(41):14812-14817.