植物染色质重塑复合体研究进展
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摘要
染色质重塑复合体在基因的转录调控方面发挥重要作用。综述了近年来国内外学者在染色质重塑复合体的组成、结构、分类及功能分析方面的最新研究概况。重点介绍了植物领域染色质重塑复合体核心亚基的研究进展,并分析了目前影响该领域发展的原因及解决对策,同时还对应用前景进行了展望。
Chromatin remodeling complex play a vital role in transcriptional regulation. In this paper, we reviewed the components, structure, classification, functional analysis of chromatin remodeling complex. Furthermore, we focus on the core subunits of chromatin remodeling in plants. Moreover, the new trends and prospects of chromatin remodeling complex were also discussed.
Chromatin remodeling complex play a vital role in transcriptional regulation. In this paper, we reviewed the components, structure, classification, functional analysis of chromatin remodeling complex. Furthermore, we focus on the core subunits of chromatin remodeling in plants. Moreover, the new trends and prospects of chromatin remodeling complex were also discussed.
引文
[1] TREMETHICK D J.Higher-order structures of chromatin:The elusive 30 nm fiber[J].Cell,2007,128(4):651-654.
[2] HAVAS K,WHITEHOUSE I,OWEN-HUGHES T.ATP-dependent chromatin remodeling activities[J].Cellular and molecular life sciences,2001,58(5/6):673-682.
[3] HARGREAVES D C,CRABTREE G R.ATP-dependent chromatin remodeling:Genetics,genomics and mechanisms[J].Cell research,2011,21(3):396-420.
[4] CLAPIER C R,CAIRNS B R.The biology of chromatin remodeling complexes[J].Annual review of biochemistry,2009,78:273-304.
[5] KWON C S,WAGNER D.Unwinding chromatin for development and growth:A few genes at a time[J].Trends genetics,2007,23(8):403-412.
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[7] VARY J C,GANGARAJU V K,QIN J,et al.Yeast Isw1p forms two separable complexes in vivo[J].Molecular cellular biology,2003,23(1):80-91.
[8] HOTA S K,BARTHOLOMEW B.Diversity of operation in ATP-dependent chromatin remodelers[J].Biochimica biophysica acta,2011,1809(9):476-487.
[9] CLAPIER C R,CAIRNS B R.The biology of chromatin remodeling complexes[J].Annual review of biochemistry,2009,78:273-304.
[10] FLAUS A,MARTIN D M A,BARTON G J,et al.Identification of multiple distinct Snf2 subfamilies with conserved structural motifs[J].Nucleic acids research,2006,34(10):2887-2905.
[11] NARLIKAR G J,FAN H Y,KINGSTON R E.Cooperation between complexes that regulate chromatin structure and transcription[J].Cell,2002,108:475-487.
[12] MARTENS J A,WINSTON F.Recent advances in understanding chromatin remodeling by Swi/Snf complexes[J].Current opinion in genetics & development,2003,13:136-142.
[13] HSIAO P W,FRYER C J,TROTTER K W,et al.BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation[J].Molecular and cellular biology,2003,23(17):6210-6220.
[14] PRECHT P,WURSTER A L,PAZIN M J.The SNF2H chromatin remodeling enzyme has opposing effects on cytokine gene expression[J].Molecular immunology,2010,47(11/12):2038-2046.
[15] DENSLOW S A,WADE P A.The human Mi-2/NuRD complex and gene regulation[J].Oncogene,2007,26:5433-5438.
[16] CHAI B,HUANG J,CAIRNS B R,et al.Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair[J].Genes development,2005,19(14):1656-1661.
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[18] HUANG J,HSU J M,LAURENT B C.The RSC nucleosome-remodeling complex is required for Cohesin's association with chromosome arms[J].Molcular cell,2004,13(5):739-750.
[19] VARY J C,JR,GANGARAJU V K,QIN J,et al.Yeast Isw1p forms two separable complexes in vivo[J].Molecular cellular biology,2003,23(1):80-91.
[20] JIANG Y J,WANG X,BAO S L,et al.INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway[J].Proceedings of the national academy of sciences of the USA,2010,107(40):17274-17279.
[21] FARRONA S,HURTADO L,BOWMAN J L,et al.The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering[J].Development,2004,131(20):4965-4975.
[22] HURTADO L,FARRONA S,REYES J C.The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana[J].Plant molcular biology,2006,62(1/2):291-304.
[23] TANG X R,HOU A F,BABU M,et al.The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves[J].Plant physiology,2008,147:1143-1157.
[24] HAN S K,SANG Y,RODRIGUES A,et al.The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis[J].Plant cell,2012,24(12):4892-4906.
[25] WAGNER D,MEYEROWITZ E M.SPLAYED,a novel SWI/SNF ATPase homolog,controls reproductive development in Arabidopsis[J].Current biology,2002,12(2):85-94.
[26] KWON C S,CHEN C,WAGNER D.WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis[J].Genes development,2005,19(8):992-1003.
[27] WU M F,SANG Y,BEZHANI S,et al.SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors[J].Proceedings of the national academy of sciences of the USA,2012,109(9):3576-3581.
[28] WALLEY J W,ROWE H C,XIAO Y M,et al.The chromatin remodeler SPLAYED regulates specific stress signaling pathways[J].PLoS Pathogens,2008,4(2):1-8.
[29] SANG Y,SILVA-ORTEGA C O,WU S,et al.Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects[J].The plant journal,2012,72(6):1000-1004.
[30] MLYNáROVá L,NAP J P,BISSELING T.The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress[J].The plant journal,2007,51(5):874-885.
[31] ZHAO C F,XU J M,CHEN Y,et al.Molecular cloning and characterization of OsCHR4,a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll[J].Planta,2012,236(4):1165-1176.
[33] GUO M X,WANG R C,WANG J,et al.ALT1,a Snf2 family chromatin remodeling ATPase,negatively regulates alkaline tolerance through enhanced defense against oxidative stress in rice[J].PLoS One,2014,9(12):1-25.
[33] ZHANG Z J,MAO Y F,HA S,et al.A multiplex CRISPR/Cas9 platform for fast and efficient editing of multiple genes in Arabidopsis[J].Plant cell reports,2015,35:1519-1533.
[34] KIM J M,TO T K,NISHIOKA T,et al.Chromatin regulation functions in plant abiotic stress responses[J].Plant,cell and environment,2010,33:604-611.
[2] HAVAS K,WHITEHOUSE I,OWEN-HUGHES T.ATP-dependent chromatin remodeling activities[J].Cellular and molecular life sciences,2001,58(5/6):673-682.
[3] HARGREAVES D C,CRABTREE G R.ATP-dependent chromatin remodeling:Genetics,genomics and mechanisms[J].Cell research,2011,21(3):396-420.
[4] CLAPIER C R,CAIRNS B R.The biology of chromatin remodeling complexes[J].Annual review of biochemistry,2009,78:273-304.
[5] KWON C S,WAGNER D.Unwinding chromatin for development and growth:A few genes at a time[J].Trends genetics,2007,23(8):403-412.
[6] CAIRNS B R,SCHLICHTER A,ERDJUMENT-BROMAGE H,et al.Two functionally distinct forms of the RSC nucleosome-remodeling complex,containing essential AT hook,BAH and bromodomains[J].Molecular cell,1999,4(5):715-723.
[7] VARY J C,GANGARAJU V K,QIN J,et al.Yeast Isw1p forms two separable complexes in vivo[J].Molecular cellular biology,2003,23(1):80-91.
[8] HOTA S K,BARTHOLOMEW B.Diversity of operation in ATP-dependent chromatin remodelers[J].Biochimica biophysica acta,2011,1809(9):476-487.
[9] CLAPIER C R,CAIRNS B R.The biology of chromatin remodeling complexes[J].Annual review of biochemistry,2009,78:273-304.
[10] FLAUS A,MARTIN D M A,BARTON G J,et al.Identification of multiple distinct Snf2 subfamilies with conserved structural motifs[J].Nucleic acids research,2006,34(10):2887-2905.
[11] NARLIKAR G J,FAN H Y,KINGSTON R E.Cooperation between complexes that regulate chromatin structure and transcription[J].Cell,2002,108:475-487.
[12] MARTENS J A,WINSTON F.Recent advances in understanding chromatin remodeling by Swi/Snf complexes[J].Current opinion in genetics & development,2003,13:136-142.
[13] HSIAO P W,FRYER C J,TROTTER K W,et al.BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation[J].Molecular and cellular biology,2003,23(17):6210-6220.
[14] PRECHT P,WURSTER A L,PAZIN M J.The SNF2H chromatin remodeling enzyme has opposing effects on cytokine gene expression[J].Molecular immunology,2010,47(11/12):2038-2046.
[15] DENSLOW S A,WADE P A.The human Mi-2/NuRD complex and gene regulation[J].Oncogene,2007,26:5433-5438.
[16] CHAI B,HUANG J,CAIRNS B R,et al.Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair[J].Genes development,2005,19(14):1656-1661.
[17] SHAKED H,AVIVI-RAGOLSKY N,LEVY A A.Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination[J].Genetics,2006,173(2):985-994.
[18] HUANG J,HSU J M,LAURENT B C.The RSC nucleosome-remodeling complex is required for Cohesin's association with chromosome arms[J].Molcular cell,2004,13(5):739-750.
[19] VARY J C,JR,GANGARAJU V K,QIN J,et al.Yeast Isw1p forms two separable complexes in vivo[J].Molecular cellular biology,2003,23(1):80-91.
[20] JIANG Y J,WANG X,BAO S L,et al.INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway[J].Proceedings of the national academy of sciences of the USA,2010,107(40):17274-17279.
[21] FARRONA S,HURTADO L,BOWMAN J L,et al.The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering[J].Development,2004,131(20):4965-4975.
[22] HURTADO L,FARRONA S,REYES J C.The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana[J].Plant molcular biology,2006,62(1/2):291-304.
[23] TANG X R,HOU A F,BABU M,et al.The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves[J].Plant physiology,2008,147:1143-1157.
[24] HAN S K,SANG Y,RODRIGUES A,et al.The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis[J].Plant cell,2012,24(12):4892-4906.
[25] WAGNER D,MEYEROWITZ E M.SPLAYED,a novel SWI/SNF ATPase homolog,controls reproductive development in Arabidopsis[J].Current biology,2002,12(2):85-94.
[26] KWON C S,CHEN C,WAGNER D.WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis[J].Genes development,2005,19(8):992-1003.
[27] WU M F,SANG Y,BEZHANI S,et al.SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors[J].Proceedings of the national academy of sciences of the USA,2012,109(9):3576-3581.
[28] WALLEY J W,ROWE H C,XIAO Y M,et al.The chromatin remodeler SPLAYED regulates specific stress signaling pathways[J].PLoS Pathogens,2008,4(2):1-8.
[29] SANG Y,SILVA-ORTEGA C O,WU S,et al.Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects[J].The plant journal,2012,72(6):1000-1004.
[30] MLYNáROVá L,NAP J P,BISSELING T.The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress[J].The plant journal,2007,51(5):874-885.
[31] ZHAO C F,XU J M,CHEN Y,et al.Molecular cloning and characterization of OsCHR4,a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll[J].Planta,2012,236(4):1165-1176.
[33] GUO M X,WANG R C,WANG J,et al.ALT1,a Snf2 family chromatin remodeling ATPase,negatively regulates alkaline tolerance through enhanced defense against oxidative stress in rice[J].PLoS One,2014,9(12):1-25.
[33] ZHANG Z J,MAO Y F,HA S,et al.A multiplex CRISPR/Cas9 platform for fast and efficient editing of multiple genes in Arabidopsis[J].Plant cell reports,2015,35:1519-1533.
[34] KIM J M,TO T K,NISHIOKA T,et al.Chromatin regulation functions in plant abiotic stress responses[J].Plant,cell and environment,2010,33:604-611.