基于R2RML的医学主题词表RDF转换实现
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摘要
针对医学主题词表(MeSH)数据存储情况和特点,利用R2RML映射语言采用一表对一表、一属性对一属性、两表之间含外键的映射等5种映射模式实现医学主题词表的源描述框架转换,为其他词表的RDB2RDF转换提供借鉴。
The paper targets at data storage and characteristics of Medical Subject Headings(MeSH), and makes use of R2 RML mapping language to actualize the Resource Description Framework(RPF) conversion of MeSH through 5 mapping modes, such as table-to-table, attribute-to-attribute, and foreign keys between tables, so as to provide references for the RDB2 RDF conversion of other subject headings.
The paper targets at data storage and characteristics of Medical Subject Headings(MeSH), and makes use of R2 RML mapping language to actualize the Resource Description Framework(RPF) conversion of MeSH through 5 mapping modes, such as table-to-table, attribute-to-attribute, and foreign keys between tables, so as to provide references for the RDB2 RDF conversion of other subject headings.
引文
1 Bernerslee T, Hendler J, Lassila 0. The Semantic Web[J]. Scientific American, 2001,284(5):34-43.
2 Williams A. The Growth of Linked Data[EB/OL].[2018-12-12]. http://readwrite. com/2011/01/18/theconcept-of-linked-data.
3高岚.网络医学信息资源检索[M].北京:化学工业出版社,2005:5.
4 Assem M, Menken M R, Schreiber G, et al. A Method forConverting Thesauri to RDF/OWL[C]. Berlin:Semantic Web-iswc:Third International Semantic Web Conference,2014:17-31.
5 Kanda J,Kaynar L,Kanda Y,et al. Pre-engraftment Syndrome After Myeloablative Dual Umbilical Cord Blood Transplantation:risk factors and response to treatment[J]. Bone marrow transplantation,2013,48(7):926-931.
6 Belleau F, Nolin M A, Tourigny N, et al. Bio2RDF:towards a mashup to build bioinformatics knowledge systems[J]. Journal of Biomedical Informatics, 2008, 41(5):706-716.
7 Callahan A, JoséCruz-Toledo, Dumontier M. Ontologybased Querying with Bio2RDF's Linked Open Data[J].Journal of Biomedical Semantics,2013(4):4-17.
8 Bushman B, Anderson D, Fu G. Transforming the Medical Subject Headings into Linked Data:creating the qauthorized version of MeSH in RDF[J]. Journal of Library Metadata,2015, 15(3-4):157-176.
9 Beckett D, Grant J. Mapping Semantic Web Data with RDBMSes[EB/OL].[2017-01-23]. http://www.w3.org/2001/sw/Europe/reports/scalable_rdbms_mapping_re-port/#sec-mapping.
10夏翠娟.RDB2RDF标准及应用研究[J].现代图书情报技术,2013(4):10-17.
11 Das S, Sundara S, CYGANIAK R. R2RML:RDB to RDF mapping language[EB/OL].[2018-12-12] http://www. w3. org/TR/r2rml/.
12 NLM. What's New for 2017 MeSH[EB/OL].[2018-12-03]. https://www.nlm.nih.gov/pubs/techbull/nd16/nd16_mesh.html.
13沈志宏,刘筱敏,郭学兵,等.关联数据发布流程与关键问题研究——以科技文献、科学数据发布为例[J].中国图书馆学报,2013,39(2):53-62.
14王思丽,祝忠明,姚晓娜.机构知识库语义知识获取方法分析及实验研究[J].现代图书情报技术,2014, 30(4):7-13.
2 Williams A. The Growth of Linked Data[EB/OL].[2018-12-12]. http://readwrite. com/2011/01/18/theconcept-of-linked-data.
3高岚.网络医学信息资源检索[M].北京:化学工业出版社,2005:5.
4 Assem M, Menken M R, Schreiber G, et al. A Method forConverting Thesauri to RDF/OWL[C]. Berlin:Semantic Web-iswc:Third International Semantic Web Conference,2014:17-31.
5 Kanda J,Kaynar L,Kanda Y,et al. Pre-engraftment Syndrome After Myeloablative Dual Umbilical Cord Blood Transplantation:risk factors and response to treatment[J]. Bone marrow transplantation,2013,48(7):926-931.
6 Belleau F, Nolin M A, Tourigny N, et al. Bio2RDF:towards a mashup to build bioinformatics knowledge systems[J]. Journal of Biomedical Informatics, 2008, 41(5):706-716.
7 Callahan A, JoséCruz-Toledo, Dumontier M. Ontologybased Querying with Bio2RDF's Linked Open Data[J].Journal of Biomedical Semantics,2013(4):4-17.
8 Bushman B, Anderson D, Fu G. Transforming the Medical Subject Headings into Linked Data:creating the qauthorized version of MeSH in RDF[J]. Journal of Library Metadata,2015, 15(3-4):157-176.
9 Beckett D, Grant J. Mapping Semantic Web Data with RDBMSes[EB/OL].[2017-01-23]. http://www.w3.org/2001/sw/Europe/reports/scalable_rdbms_mapping_re-port/#sec-mapping.
10夏翠娟.RDB2RDF标准及应用研究[J].现代图书情报技术,2013(4):10-17.
11 Das S, Sundara S, CYGANIAK R. R2RML:RDB to RDF mapping language[EB/OL].[2018-12-12] http://www. w3. org/TR/r2rml/.
12 NLM. What's New for 2017 MeSH[EB/OL].[2018-12-03]. https://www.nlm.nih.gov/pubs/techbull/nd16/nd16_mesh.html.
13沈志宏,刘筱敏,郭学兵,等.关联数据发布流程与关键问题研究——以科技文献、科学数据发布为例[J].中国图书馆学报,2013,39(2):53-62.
14王思丽,祝忠明,姚晓娜.机构知识库语义知识获取方法分析及实验研究[J].现代图书情报技术,2014, 30(4):7-13.