ceRNA对植物纤维素形成的调控研究进展
详细信息    查看全文 | 推荐本文 |
  • 英文篇名:Research Progress in the Regulation of ceRNA on Plant Cellulose Formation
  • 作者:詹妮 ; 谢耀坚 ; 吴志华 ; 刘果 ; 尚秀华
  • 英文作者:ZHAN Ni;XIE Yaojian;WU Zhihua;LIU Guo;SHANG Xiuhua;China Eucalypt Research Centre;
  • 关键词:竞争性内源RNA ; 纤维素 ; 转录因子 ; 表达调控
  • 英文关键词:ceRNA;;cellulose;;transcription factors;;expression regulation
  • 中文刊名:ASKJ
  • 英文刊名:Eucalypt Science & Technology
  • 机构:国家林业和草原局桉树研究开发中心;
  • 出版日期:2019-03-15
  • 出版单位:桉树科技
  • 年:2019
  • 期:v.36;No.108
  • 基金:国家自然科学基金面上项目“桉树抗风特性及其主要影响因子研究”(31570615);; 国家重点研发计划课题“桉树、云南松(思茅松)、华山松丰产增效技术集成与示范”(2017YFD0601202)
  • 语种:中文;
  • 页:ASKJ201901009
  • 页数:7
  • CN:01
  • ISSN:44-1246/S
  • 分类号:59-65
摘要
植物纤维素的形成是由多个基因参与且呈网络调控。通过对纤维素形成过程中的关键酶基因、转录因子以及ceRNA研究的阐述,深入了解纤维素生物合成调控机制。综述植物纤维素形成过程中的纤维素合酶、蔗糖合成酶、MYB等重要基因以及lncRNA、miRNA、circRNA类ceRNA,阐述其复杂的分子调控网络,以期解析植物纤维素形成过程中的分子调控机制,深入了解植物纤维素形成过程。
        The formation of plant cellulose is regulated by multiple genes and pathways. In this paper, the key enzyme genes, transcription factors and ceRNA in the process of cellulose formation are elaborated to further understand the regulation mechanism of cellulose biosynthesis. The key genes including cellulose synthase,sucrose synthase, MYB and ceRNA including lncRNA, miRNA and circRNA in the process of plant cellulose formation are reviewed. The complex molecular control network is expounded in order to analyze the molecular control mechanism of plant cellulose formation, and to understand the process of plant cellulose formation.
引文
[1]SETHAPPHONG L,DAVIS J K,SLABAUGH E,et al.Prediction of the structures of the plant specific regions of vascular plant cellulose synthases and correlated functional analysis[J].Cellulose,2016,23(1):145-161.
    [2]PLOMION C,LEPROVOST G,STOKES A.Wood formation in trees[J].Plant Physiology,2001,127(4):1513-1523.
    [3]STECK E.Regulation of H19 and its encoded micro RNA-675 in osteoarthritis and under anabolic and catabolic in vitro conditions[J].Journal of Molecular Medicine,2012,90(10):1185-1195.
    [4]CHANG H Y.Long noncoding RNAs:cellular address codes in development and disease[J].Cell,2013,152(6):1298-1307.
    [5]RINN J L,CHANG H Y.Genome regulation by long noncoding RNAs[J].Annual Review of Biochemistry,2012,81(1):145-166.
    [6]SALMENA L,POLISENO L,TAY Y,et al.A ce RNAhypothesis:the Rosetta stone of a hidden RNAlanguage?[J].Cell,2011,146(3):353-358.
    [7]BARTEL D P.Micro RNAs:Target recognition and regulatory functions[J].Cell,2009,136(2):215-233.
    [8]GU Y,KAPLINSKY N,BRINGMANN M,et al.Identification of a cellulose synthase-associated protein required for cellulose biosynthesis[J].Proceedings of the National Academy of Sciences of the United States of America,2010,107(29):12866-12871.
    [9]许雷,刘一星,方连玉.大青杨纤维素合成酶Pu Ces A6基因c DNA的克隆及序列分析[J].西南林业大学学报,2012,32(5):26-32.
    [10]刘昱翔,陈建荣,彭彦,等.苎麻纤维素合成酶基因Bn Ces A4 c DNA序列的克隆与表达分析[J].作物研究,2014,28(5):472-478.
    [11]阮维程,潘婷,季孔庶.马尾松纤维素合成酶基因Pm Ces A1的克隆及其分析[J].分子植物育种,2015,13(4):861-870.
    [12]ARIOLI T,PENG L C,BETZNER A S,et al.Molecular analysis of cellulose biosynthesis in Arabidopsis[J].Science,1998,279(5351):717-720.
    [13]FAGARD M,DESNOS T,DESPREZ T,et al.PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifically in roots and dark-grown hypocotyls of Arabidopsis[J].Plant Cell,2000,12(12):2409-2424.
    [14]SCHEIBLE W R,ESHED R,RICHMOND T,et al.Modifications of cellulose synthase confer resistance to isoxaben and thiazolidinone herbicides in Arabidopsis Ixr1mutants[J].Proceedings of the National Academy of Sciences of the United States of America,2001,98(18):10079-10084.
    [15]TAYLOR N G,LAURIE S,TURNER S R.Multiple cellulose synthase catalytic subunits are required for cellulose synthesis in Arabidopsis[J].Plant Cell,2000,12(12):2529-2539.
    [16]TURNER S R,SOMERVILLE C R.Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall[J].Plant Cell,1997,9(5):689-701.
    [17]BARRERO S C,HERNANDO A S,GONZALEZ M P,et al.Structure,expression profile and subcellular localisation of four different sucrose synthase genes from barley[J].Planta,2011,234(2):391-403.
    [18]POOVAIAH C R,MAZAREI M,DECKER S R,et al.Transgenic switchgrass(Panicum virgatum L.)biomass is increased by over-expression of switchgrass sucrose synthase(PvSUS1)[J].Biotechnology Journal,2015,10(4):552-563.
    [19]房经贵,朱旭东,贾海锋,等.植物蔗糖合酶生理功能研究进展[J].南京农业大学学报,2017,40(5):759-768.
    [20]COLEMAN H D,YAN J,MANSFIELD S D,et al.Sucrose synthase affects carbon partitioning to increase cellulose production and altered cell wall ultrastructure[J].Proceedings of the National Academy of Sciences of the United States of America,2009,106(31):13118-13123.
    [21]FUJII S,HAYASHI T,MIZUNO K.Sucrose synthase is an integral component of the cellulose synthesis machinery[J].Plant and Cell Physiology,2010,51(2):294-301.
    [22]BAI W Q,XIAO Y H,ZHAO J,et al.Gibberellin overproduction promotes sucrose synthase expression and secondary cell wall deposition in cotton fibers[J].Plos One,2014,9(5):e96537.
    [23]詹妮,谢耀坚,陈鸿鹏,等.巨桉Su Sy基因家族的生物信息学分析[J].热带亚热带植物学报,2018,26(6):580-588.
    [24]CARDINI C E,LELOIR F,CHIRIBOGA J.The biosynthesis of sucrose[J].Journal of Biological Chemistry,1955,214(1):149-156.
    [25]雷美华,叶冰莹,王冰梅,等.甘蔗蔗糖合成酶基因的克隆[J].应用与环境生物学报,2008,14(2):177-179.
    [26]BAUD S,VAULTIER M N,ROCHAT C.Structure and expression profile of the sucrose synthase multigene family in Arabidopsis[J].Journal of Experimental Botany,2004,55(396):397-409.
    [27]CARLSON S J,CHOUREY P S,HELENTJARID T,et al.Gene expression studies on developing kernels of maize sucrose synthase(SuSy)mutants show evidence for a third Su Sy gene[J].Plant Molecular Biology,2002,49(1):15-29.
    [28]HIROSE T,SCOFIELD G N,TERAO T.An expression analysis profile for the entire sucrose synthase gene family in rice[J].Plant Science,2008,174(5):534-543.
    [29]CHEN A Q,HE S,LI F F,et al.Analyses of the sucrose synthase gene family in cotton:Structure,phylogeny and expression patterns[J].BMC Plant Biology,2012,12(1):85-102.
    [30]冯延芝,魏琦琦,何潇等.枣蔗糖合成酶基因SS6的克隆及表达分析[J].经济林研究,2017(4):36-42.
    [31]贾春平,耿洪伟,朱亚夫,等.海岛棉蔗糖合成酶基因克隆及生物信息学和表达模式分析[J].分子植物育种,2016,14(2):286-301.
    [32]JIANG Y J,GUO W Z,ZHU H Y,et al.Overexpression of Gh Sus A1 increases plant biomass and improves cotton fiber yield and quality[J].Plant Biotechnology Journal,2012,10(3):301-312.
    [33]WEI Z G,QU Z S,ZHANG L J,et al.Overexpression of poplar xylem sucrose synthase in tobacco leads to a thickened cell wall and increased height[J].Plos One,2015,10(3):e0120669.
    [34]XU S M,BRILL E,LLEWELLYN D J.,et al.Overexpression of a potato sucrose synthase gene in cotton accelerates leaf expansion,reduces seed abortion,and enhances fiber production[J].Molecular Plant,2012,5(2):430-441.
    [35]赵美荣.植物扩展蛋白基因及其表达调控的研究进展[J].赤峰学院学报(自然版),2014(14):1-5.
    [36]COSGROVE D J.Growth of the plant cell wall[J].Nature Reviews Molecular Cell Biology,2005,6(11):850-861.
    [37]COSGROVE D J.Characterization of long-term extension of isolated cell walls from growing cucumber hypocotyls[J].Planta,1989,177(1):121-130.
    [38]GRAY M M,BLOMQUIST K,MCQUEEN M S,et al.Ectopic expression of a wood-abundant expansin Ptt EXPA1 promotes cell expansion in primary and secondary tissues in aspen[J].Plant Biotechnology Journal,2008,6(1):62-72.
    [39]GRAY M M,MELLEROWICZ E J,ABE H,et al.Expansins abundant in secondary xylem belong to subgroup A of the alpha-expansin gene family[J].Plant Physiology,2004,135(3):1552-1564.
    [40]XU B,GOU J Y,LI F G,et al.A cotton BURP domain protein interacts withα-Expansin and their Co-expression promotes plant growth and fruit production[J].Molecular Plant,2013,6(3):945-958.
    [41]SARA Z,LARA R,GIOVANNI B T,et al.Down regulation of the Petunia hybridaα-Expansin Gene Ph EXP1 reduces the amount of crystalline cellulose in cell walls and leads to phenotypic changes in Petal Limbs[J].Plant Cell,2004,16(2):295-308.
    [42]CENIK E S,ZAMORE P D.Argonaute proteins[J].Current Biology,2011,21(12):446-449.
    [43]范春节,闫慧芳,裘珍飞,等.巨桉AGO基因家族的生物信息学分析[J].热带亚热带植物学报,2015,23(4):361-369.
    [44]程健弘,魏明科,林二培,等.杉木HD-ZipⅢ转录因子的克隆及表达分析[J].农业生物技术学报,2017(11):1820-1830.
    [45]ITOH J I,HIBARA K I,SATO Y,et al.Developmental Role and Auxin Responsiveness of Class IIIHomeodomain Leucine Zipper Gene Family Members in Rice[J].Plant Physiology,2008,147(4):1960-1975.
    [46]KO J H,PRASSINOS C,HAN K H.Developmental and seasonal expression of Pta HB1,a Populus gene encoding a class III HD-Zip protein,is closely associated with secondary growth and inversely correlated with the level of microRNA(mi R166)[J].New Phytologist,2006,169(3):469-478.
    [47]CAROLINE L,COTEET B F,ROY V,et al.Gene family structure,expression and functional analysis of HD-Zip IIIgenes in angiosperm and gymnosperm forest trees[J].BMC Plant Biology,2010,10(1):273.
    [48]GEETHALAKSHMI S,BARATHKUMAR S,PRABU G.The MYB transcription factor family genes in Sugarcane(Saccharum sp.)[J].Plant Molecular Biology Reporter,2015,33(3):512-531.
    [49]LI C,WANG X,RAN L,et al.PtoMYB92 is a transcriptional activator of the lignin biosynthetic pathway during secondary cell wall formation in Populus tomentosa[J].Plant and Cell Physiology,2015,56(12):24-36.
    [50]LI C,NG C K Y,FAN L M.MYB transcription factors,active players in abiotic stress signaling[J].Environmental&Experimental Botany,2015,114:80-91.
    [51]HAI D,BO R F,SI S Y,et al.The R2R3-MYBtranscription factor gene family in Maize[J].Plos One,2012,7(6):e37463.
    [52]刘慧子,孙丹,于颖,等.白桦MYB家族基因序列及表达分析[J].植物研究,2016,36(2):252-257.
    [53]叶胜龙.毛白杨MYB055转录因子在次生壁合成中的调控机制研究[D].重庆:西南大学,2015.
    [54]SARVER A L,SUBRAMANIAN S.Competing endogenous RNA database[J].Bioinformation,2012,8(15):731-733.
    [55]ZHANG Y,TAO Y,LIAO Q.Long noncoding RNA:a crosslink in biological regulatory network[J].Briefings in Bioinformatics,2018,19(5):930-945..
    [56]ANITA Q G,SOFIA N,HELENA S.Non-Coding RNAs:multi-tasking molecules in the cell[J].International Journal of Molecular Sciences,2013,14(8):16010-16039.
    [57]WILUSZ J E.Long noncoding RNAs:re-writing dogmas of RNA processing and stability[J].Biochimica et Biophysica Acta-biomembranes,2016,1859(1):128-138.
    [58]WANG H,CHUNG P J,LIU J,et al.Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis[J].Genome Research,2014,24(3):444-453.
    [59]CAGIRICI H B,ALPTEKIN B,BUDAK H.RNA sequencing and co-expressed long non-coding RNA in modern and wild wheats[J].Scientific Reports,2017,7(1):10670.
    [60]LI L,EICHTEN S R,SHIMIZU R,et al.Genome-wide discovery and characterization of maize long non-coding RNAs[J].Genome Biology,2014,15(2):R40.
    [61]QI X,XIE S,LIU Y,et al.Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing[J].Plant Molecular Biology,2013,83(4-5):459-473.
    [62]LU X,CHEN X,MU M,et al.Genome-wide analysis of long noncoding RNAs and their responses to drought stress in cotton(Gossypium hirsutum L.)[J].Plos One,2016,11(6):e0156723.
    [63]ZHU Y,CHEN L,ZHANG C,et al.Global transcriptome analysis reveals extensive gene remodeling,alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii[J].BMCGenomics,2017,18(Suppl1):1042.
    [64]ZHANG G,DUAN A,ZHANG J,et al.Genome-wide analysis of long non-coding RNAs at the mature stage of sea buckthorn(Hippophae rhamnoides Linn)fruit[J].Gene,2017,596:130-136.
    [65]XU Q,SONG Z,ZHU C,et al.Systematic comparison of lnc RNAs with protein coding m RNAs in population expression and their response to environmental change[J].BMC Plant Biology,2017,17(1):42.
    [66]LV Y,LIANG Z,MIN G,et al.Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize(Zea mays L.)[J].BMCGenomics,2016,17(1):350.
    [67]TIAN J,SONG Y,DU Q,et al.Population genomic analysis of gibberellin-responsive long non-coding RNAs in Populus[J].Journal of Experimental Botany,2016,67(8):2467-2482.
    [68]AXTELL M J.Classification and comparison of small RNAs from plants[J].Annual Review Plant Biology,2013,64:137-159.
    [69]PARK S M,PETER M E.microRNAs and death receptors[J].Cytokine&Growth Factor Reviews,2008,19(3/4):303-311.
    [70]SHUAI P,LIANG D,ZHANG Z,et al.Identification of droughtresponsive and novel Populus trichocarpa micro RNAs by highthroughput sequencing and their targets using degradome analysis[J].BMC Genomics,2013,14:233.
    [71]MCNAIR G R.Whole-tree and tension wood-associated expression profiles of micrornas in Eucalyptus trees[D].Pretoria:University of Pretoria,2009.
    [72]PAPPAS M,REIS A,FARINELL L,et al.Interspecific discovery and expression profiling of Eucalyptus micro RNAs by deep sequencing[J].BMC Proceedings,2011,5(7):1-2.
    [73]李崇奇,沈文涛,言普,等.巨桉mi RNA及其靶基因生物信息学预测[J].南方农业学报,2014,45(9):1532-1538.
    [74]NIGRO J M,CHO K R,FEARON E R.,et al.Scrambled exons.[J].Cell,2016,64(3):607-613.
    [75]EBERT M S,NEILSON J R,SHARP P A.Micro RNAsponges:competitive inhibitors of small RNAs in mammalian cells[J].Nature Methods,2007,4(9):721-726.
    [76]岳慧芳,任永哲,王志强,等.circ RNAs在植物中的研究进展[J].西北植物学报,2018,38(2):386-392.
    [77]LIU Q,ZHANG X,HU X,et al.Circular RNA related to the chondrocyte ECM regulates MMP13 expression by functioning as a Mi R-136‘Sponge’in human cartilage degradation[J].Scientific Reports,2016,6:22572.
    [78]CHEN B,HUANG S.Circular RNA:An emerging non-coding RNA as a regulator and biomarker in cancer[J].Cancer Letters,2018,418(18):30033-30038.
    [79]GREENE J,BAIRD A M,BRADY L,et al.Circular RNAs:biogenesis,function and role in human diseases[J].Frontiers in Molecular Biosciences,2017,4:38.
    [80]LEE S M,KONG H G,RYU C M.Are Circular RNAs New Kids on the Block?[J].Trends in Plant Science,2017,22(5):357-360.
    [81]WANG P L,BAO Y,YEE M C,et al.Circular RNA Is expressed across the eukaryotic tree of life[J].Plos One,2014,9(6):e90859.
    [82]ANDREEVA K,COOPER N G F.Circular RNAs:new players in gene regulation[J].Advances in Bioscience&Biotechnology,2015,6(6):433-441.
    [83]CHU Y Y,LI C,CHEN L,et al.Widespread noncoding circular RNAs in plants[J].New Phytologist,2015,208(1):88-95.
    [84]YE C Y,ZHANG X,CHU Q,et al.Full-length sequence assembly reveals circular RNAs with diverse non-GT/AGsplicing signals in rice[J].RNA Biology,2016,14(8):1-9.
    [85]DARBANI B,NOEPARVAR S,BORG S.Identification of circular RNAs from the parental genes involved in multiple aspects of cellular metabolism in barley[J].Frontiers in Plant Science,2016,7:776.
    [86]ZUO J,WANG Q,ZHU B,et al.Deciphering the roles of circ RNAs on chilling injury in tomato[J].Biochemical&Biophysical Research Communications,2016,479(2):132-138.
    [87]WANG Y,YANG M,WEI S,et al.Identification of circular RNAs and their targets in leaves of Triticum aestivum L.under dehydration stress[J].Frontiers in Plant Science,2017,7:1-10.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700