Y染色体微缺失人群中Y-STR等位基因缺失模式分析
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  • 英文篇名:Alleles dropout patterns of Y-short tandem repeats in infertilemales with Y chromosome microdeletions
  • 作者:王燕超 ; 马晓燕 ; 孙筱放 ; 冼嘉嘉 ; 李少英 ; 何文智 ; 王晓蔓 ; 黎青
  • 英文作者:Yanchao Wang;Xiaoyan Ma;Xiaofang Sun;Jiajia Xian;Shaoying Li;Wenzhi He;Xiaoman Wang;Qing Li;Institute of Obstetrics and Gynecology, the Third Affiliated Hospital of Guangzhou Medical University, Key Laboratory of Reproduction and Genetics of Guangdong Higher Education Guangzhou;
  • 关键词:Y染色体微缺失 ; AZF缺失 ; Y-STR等位基因缺失 ; 不育症
  • 英文关键词:Y chromosomal microdeletions;;AZF deletion;;Y chromosomal short tandem repeats alleles dropout;;infertility
  • 中文刊名:YCZZ
  • 英文刊名:Hereditas
  • 机构:广州医科大学附属第三医院妇产科研究所实验部广东省普通高校生殖与遗传重点实验室;
  • 出版日期:2019-01-14 13:15
  • 出版单位:遗传
  • 年:2019
  • 期:v.41
  • 基金:广东省科技计划项目(编号:2016A20214011)资助~~
  • 语种:中文;
  • 页:YCZZ201903007
  • 页数:11
  • CN:03
  • ISSN:11-1913/R
  • 分类号:63-73
摘要
Y染色体短串联重复序列(Y-short tandem repeats, Y-STRs)已被广泛应用到DNA检验领域。然而,由于Y染色体存在较高的结构突变率,可能会导致部分Y-STR等位基因丢失甚至产生特殊的缺失模式,从而影响其在法医学中的应用。位于Y染色体长臂的无精子症因子(azoospermia factor, AZF)与精子发生有关,该区域微缺失可导致不育症。然而Y染色体微缺失人群是否存在特殊的Y-STR缺失模式仍有待研究。本文利用法医学上常用17个Y-STR探讨了85例Y染色体微缺失患者的Y-STR缺失模式。结果显示,单纯AZF a区缺失样本,均存在DYS439-DYS389I-DYS389II基因座无效扩增情况;单纯AZF b区或单纯AZF c区缺失样本存在DYS448基因座无效扩增;复合AZF b+c+d区缺失样本存在DYS385-DYS392-DYS448基因座无效扩增;复合AZFa+b+c+d区缺失样本存在DYS390-Y-GATA-H4-DYS385-DYS392-DYS448基因座无效扩增。因此,本研究结果提示Y-STR缺失模式与Y染色体微缺失有对应关系。
        Y chromosomal short tandem repeat(Y-STR) typing is the most commonly used genetic technique in forensic studies. However, there may be a limit to the application of Y-STR in forensic science as Y-STR loci are subject to loss or variation caused by the higher chromosomal structures' spontaneous mutation rate. Located in the long arm of the Y chromosome, azoospermia factor(AZF) have been shown to participate in spermatogenesis and its deletion could cause infertility. However, little is known about the Y-STR dropout pattern in individuals with Y chromosome microdeletions. In this study, 85 infertile males with Y chromosome interstitial deletion were identified and special Y-STR allele dropout patterns were analyzed by employing a Y-STR Commercial Kit and a Y chromosome Deletion Kit. Results demonstrate that AZF a region deletion are related to DYS439-DYS389 I-DYS389 II alleles dropout, while AZF b region or c region deletions correlate to DYS448 allele dropout. Null DYS385-DYS392-DYS448 alleles were observed in AZF b+c+d region deletion individuals. While null DYS390-Y-GATA-H4-DYS385-DYS392-DYS448 alleles were observed in AZF a+b+c+d large region deletion individuals. Our data suggest that Y chromosome microdeletions may indicate specific Y-STR locus dropout patterns.
引文
[1]Kayser M.Forensic use of Y-chromosome DNA:a general overview.Hum Genet,2017,136(5):621-635.
    [2]Willems T,Gymrek M,Poznik GD,Tyler-Smith C,The1000 Genomes Project Chromosome Y Group,Erlich Y.Population-Scale sequencing data enable precise estimates of Y-STR mutation rates.Am J Hum Genet,2016,98(5):919-933.
    [3]Liu H.Establishment of fluorescence labeled 24 Y-STRs loci multiplex PCR system and its application in forensic medicine(thesis)[D].Southern Medical University,2012.刘宏.24个Y-STR基因座荧光标记复合检测体系的建立及其法医学应用[学位论文].南方医科大学,2012.
    [4]Tiepolo L,Zuffardi O.Localization of factors controlling spermatogenesis in the nonfluorescent portion of the human Y chromosome long arm.Hum Genet,1976,34(2):119-124.
    [5]Liu XG,Hu HY,Guo YH,Sun YP.Correlation between Y chromosome microdeletion and male infertility.Genet Mol Res,2016,15(2).
    [6]Vogt PH,Edelmann A,Kirsch S,Henegariu O,Hirschmann P,Kiesewetter F,K?hn FM,Schill WB,Farah S,Ramos C,Hartmann M,Hartschuh W,Meschede D,Behre HM,Castel A,Nieschlag E,Weidner W,Gr?ne HJ,Jung A,Engel W,Haidl G.Human Y chromosome azoospermia factors(AZF)mapped to different subregions in Yq11.Hum Mol Genet,1996,5(7):933-943.
    [7]Kent-First M,Muallem A,Shultz J,Pryor J,Roberts K,Nolten W,Meisner L,Chandley A,Gouchy G,Jorgensen L,Havighurst T,Grosch J.Defining regions of the Y-chromosome responsible for male infertility and identification of a fourth AZF region(AZFd)by Y-chromosome microdeletion detection.Mol Reprod Dev,1999,53(1):27-41.
    [8]Ataei M,Akbarian F,Talebi MA,Dolati P,Mobaraki M,Faraji A,Houshmand M.Analysis of partial AZFc(gr/gr,b1/b3,and b2/b3)deletions in Iranian oligozoospermia candidates for intracytoplasmic sperm injection(ICSI).Turk J Med Sci,2018,48(2):251-256.
    [9]Sen S,Pasi AR,Dada R,Shamsi MB,Modi D.Ychromosome microdeletions in infertile men:Prevalence,phenotypes and screening markers for the Indian population.J Assist Reprod Gen,2013,30(3):413-422.
    [10]Foresta C,Moro E,Rossi A,Rossato M,Garolla A,Ferlin A.Role of the AZFa candidate genes in male infertility.JEndocrinol Invest,2000,23(10):646-651.
    [11]Sen S,Ambulkar P,Hinduja I,Zaveri K,Gokral J,Pal A,Modi D.Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions.J Assist Reprod Gen,2015,32(9):1333-1341.
    [12]Liu XY,Wang RX,Fu Y,Luo LL,Guo W,Liu RZ.Outcomes of intracytoplasmic sperm injection in oligozoospermic men with Y chromosome AZFb or AZFc microdeletions.Andrologia,2017,49(1):e12602
    [13]Zhang YS,Li LL,Xue LT,Zhang H,Zhu YY,Liu RZ.Complete azoospermia factor b deletion of Y chromosome in an infertile male with severe oligoasthenozoospermia:Case report and literature review.Urology,2017,102:111-115.
    [14]Liu XH,Qiao J,Li R,Yan LY,Chen LX.Y chromosome AZFc microdeletion may not affect the outcomes of ICSIfor infertile males with fresh ejaculated sperm.J Assist Reprod Gen,2013,30(6):813-819.
    [15]Fu L,Xiong DK,Ding XP,Li C,Zhang LY,Ding M,Nie SS,Quan Q.Genetic screening for chromosomal abnormalities and Y chromosome microdeletions in Chinese infertile men.J Assist Reprod Gen,2012,29(6):521-527.
    [16]Nakahori Y,Takenaka O,Nakagome Y.A human X-Yhomologous region encodes"amelogenin".Genomics,1991,9(2):264-269.
    [17]Sullivan KM,Mannucci A,Kimpton CP,Gill P.A rapid and quantitative DNA sex test:fluorescence-based PCRanalysis of X-Y homologous gene amelogenin.Biotechniques,1993,15(4):636-638,640-641.
    [18]Ye JJ,Li ZF,Chen YX,Ma L,Li M,Wang YL,Yang LJ,Chen BW.Analysis of null alleles for 17 Y chromosomeshort tandem repeat loci in infertile males.Chin J Med Gene,2013,30(3):330-334.叶峻杰,李宗芳,陈燕祥,马丽,李貌,郭海,王跃力,杨丽娟,程宝文.男性不育人群17个Y染色体短串联重复基因座无效等位基因分析.中华医学遗传学杂志,2013,30(3):330-334.
    [19]Wang YL,Ye JJ,Li ZF,Zheng S,Ma L,Guo H,Yang LJ,Chen BW.Identification of null and duplicated alleles for forensic DYS549,DYS527 and DYS459 in male infertility population.Hereditas(Beijing),2014,36(8):786-792.王跃力,叶峻杰,李宗芳,郑水,马丽,郭海,杨丽娟,程宝文.对法医学相关的DYS549?DYS527?DYS459基因座在男性不育症人群中的缺失?重复调查.遗传,2014,36(8):786-792.
    [20]Ma Y,Kuang JZ,Zhang J,Wang GM,Wang YJ,Jin WM,Hou YP.Y chromosome interstitial deletion induced Y-STR allele dropout in AMELY-negative individuals.Int J Legal Med,2012,126(5):713-724.
    [21]Takayama T,Takada N,Suzuki R,Nagaoka S,Watanabe Y,Kumagai R,Aoki Y,Butler JM.Determination of deleted regions from Yp11.2 of an amelogenin negative male.Legal Med-Tokyo,2009,11(Suppl.1):S578-S580.
    [22]Davis C,Illescas M,Tirado C,Lopez R,Budowle B,Cruz TD.A case of amelogenin Y-null:a simple primer binding site mutation or unusual genetic anomaly?Leg Med,2012,146):320-323.
    [23]Krausz C,Hoefsloot L,Simoni M,Tüttelmann F.European Academy of Andrology,European Molecular Genetics Quality Network.EAA/EMQN best practice guidelines for molecular diagnosis of Y-chromosomal microdeletions:state-of-the-art 2013.Andrology,2014,2(1):05-19
    [24]Shang L,Mo XT,Yang F,Zhang J,Yu ZL,Ma X,Zhao XC,Li WS.Progress towards forensic research and application of Multi-copied Y-STR loci.Foren Sci Technol,2018,43(2):97-103.尚蕾,莫晓婷,杨帆,张建,余政梁,马新,赵兴春,李万水.多拷贝Y-STR基因座在法庭科学领域的研究.刑事技术.2018,43(2):97-103.
    [25]Yannic G,Basset P,Hausser J.A new perspective on the evolutionary history of western European Sorex araneus group revealed by paternal and maternal molecular markers.Mol Phylogenet Evol,2008,47(1):237-250.
    [26]Zhang WQ,Liu YX,Huang DX.Y-STR mutation and forensic application of rapidly mutating Y-STRs.Chin JFore Medi,2015,30(4):380-383.张文琼,刘宇轩,黄代新.Y-STR突变及快速突变Y-STR的法医学应用价值.中国法医学杂志,2015,30(4):380-383.
    [27]Ballantyne KN,Keerl V,Wollstein A,Choi Y,Zuniga SB,Ralf A,Vermeulen M,de Knijff P,Kayser M.A new future of forensic Y-chromosome analysis:Rapidly mutating Y-STRs for differentiating male relatives and paternal lineages.Forensic Sci Int-Gen,2012,6(2):208-218.
    [28]Repping S,Skaletsky H,Lange J,Silber S,Van Der Veen F,Oates RD,Page DC,Rozen S.Recombination between palindromes P5 and P1 on the human Y chromosome causes massive deletions and spermatogenic failure.Am JHum Genet,2002,71(4):906-922.
    [29]Yang Y,Zhang SZ,Y chromosome variations and male infertility.Chin J Med Genet,2010,27(3):276-281.杨元,张思仲.Y染色体变异与男性不育.中华医学遗传学杂志,2010,27(3):276-281.
    [30]Ballantyne KN,Goedbloed M,Fang R,Schaap O,Lao O,Wollstein A,Choi Y,van Duijn K,Vermeulen M,Brauer S,Decorte R,Poetsch M,von Wurmb-Schwark N,de Knijff P,Labuda D,Vézina H,Knoblauch H,Lessig R,Roewer L,Ploski R,Dobosz T,Henke L,Henke J,Furtado MR,Kayser M.Mutability of Y-chromosomal microsatellites:rates,characteristics,molecular bases,and forensic implications.Am J Hum Genet,2010,87(3):341-353.
    [31]Goedbloed M,Vermeulen M,Fang RN,Lembring M,Wollstein A,Ballantyne K,Lao O,Brauer S,Krüger C,Roewer L,Lessig R,Ploski R,Dobosz T,Henke L,Henke J,Furtado MR,Kayser M.Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCRamplification kit.Int J Legal Med,2009,123(6):471-482.
    [32]Colaco S,Modi D.Genetics of the human Y chromosome and its association with male infertility.Reprod Biol Endocrin,2018,16(1):14.
    [33]Sen S,Ambulkar P,Hinduja I,Zaveri K,Gokral J,Pal A,Modi D.Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions.J Assist Reprod Genet,2015,32(9):1333-1341.
    [34]Zhang YS,Li LL,Xue LT,Zhang H,Zhu YY,Liu RZ.Complete Azoospermia Factor b deletion of Y chromosome in an infertile male with severe oligoasthenozoospermia:case report and literature review.Urology,2017,102:111-115.
    [35]Yousefi-Razin E,Nasiri MJ,Omrani MD.Frequency of Y chromosome microdeletions among Iranian infertile men with azoospermia and severe oligozoospermia:a meta-analysis.J Reprod Infertil,2016,17(4):208-212.
    [36]Zhang YS,Dai RL,Wang RX,Zhang HG,Chen S,Liu RZ.Analysis of y chromosome microdeletion in 1738 infertile men from Northeastern China.Urology,2013,83(3):584-588.
    [37]Ak?nsal EC,Baydilli N,Dündar M,Ekmek?io?lu O.The frequencies of Y chromosome microdeletions in infertile males.Turk J Urol,2018,44(5):389-392.
    [38]Balaresque P,Bowden GR,Parkin EJ,Omran GA,Heyer E,Quintana-Murci L,Roewer L,Stoneking M,Nasidze I,Carvalho-Silva DR,Tyler-Smith C,de Knijff P,Jobling MA.Dynamic nature of the proximal AZFc region of the human Y chromosome:multiple independent deletion and duplication events revealed by microsatellite analysis.Hum Mutat,2008,29(10):1171-1180.
    [39]Turrina S,Caratti S,Ferrian M,De Leo D.Deletion and duplication at DYS448 and DYS626 loci:unexpected patterns within the AZFc region of the Y-chromosome.Int J Legal Med,2015,129(3):449-455.
    [40]Chang YM,Perumal R,Keat PY,Yong RY,Kuehn DL,Burgoyne L.A distinct Y-STR haplotype for Amelogenin negative males characterized by a large Y(p)11.2(DYS458-MSY1-AMEL-Y)deletion.Forensic Sci Int,2007,166(2-3):115-120.
    [41]Ou X,Chen W,Chen H,Zhao F,Zheng J,Tong D,Chen Y,Chen A,Sun H.Null alleles of the X and Y chromosomal amelogenin gene in a Chinese population.Int J Legal Med,2012,126(4):513-518.

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