De?ning gene networks controlling the maintenance and function of the differentiation niche by an in vivo systematic RNAi screen
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  • 英文篇名:De?ning gene networks controlling the maintenance and function of the differentiation niche by an in vivo systematic RNAi screen
  • 作者:Yuan ; Gao ; Ying ; Mao ; Rong-Gang ; Xu ; Ruibao ; Zhu ; Ming ; Zhang ; Jin ; Sun ; Da ; Shen ; Ping ; Peng ; Ting ; Xie ; Jian-Quan ; Ni
  • 英文作者:Yuan Gao;Ying Mao;Rong-Gang Xu;Ruibao Zhu;Ming Zhang;Jin Sun;Da Shen;Ping Peng;Ting Xie;Jian-Quan Ni;PKU-THU Joint Center for Life Sciences,College of Life Sciences,School of Medicine,Tsinghua University;Gene Regulatory Lab,School of Medicine,Tsinghua University;Stowers Institute for Medical Research;Tsingdao Advanced Research Institute,Tongji University;
  • 英文关键词:Germline stem cells;;Escort cells;;In vivo screen
  • 中文刊名:YCXB
  • 英文刊名:遗传学报(英文版)
  • 机构:PKU-THU Joint Center for Life Sciences,College of Life Sciences,School of Medicine,Tsinghua University;Gene Regulatory Lab,School of Medicine,Tsinghua University;Stowers Institute for Medical Research;Tsingdao Advanced Research Institute,Tongji University;
  • 出版日期:2019-01-20
  • 出版单位:Journal of Genetics and Genomics
  • 年:2019
  • 期:v.46
  • 基金:supported by the National Key Technology Research and Development Program of the Ministry of Science and Technology of the People's Republic of China (2016YFE0113700);; the National Natural Science Foundation of China (31571320, 31872818, and 31801079)
  • 语种:英文;
  • 页:YCXB201901004
  • 页数:12
  • CN:01
  • ISSN:11-5450/R
  • 分类号:23-34
摘要
In the Drosophila ovary, escort cells (ECs) extrinsically control germline stem cell (GSC) maintenance and progeny differentiation. However, the underlying mechanisms remain poorly understood. In this study,we identified 173 EC genes for their roles in controlling GSC maintenance and progeny differentiation by using an in vivo systematic RNAi approach. Of the identified genes, 10 and 163 are required in ECs to promote GSC maintenance and progeny differentiation, respectively. The genes required for progeny differentiation fall into different functional categories, including transcription, mRNA splicing, protein degradation, signal transduction and cytoskeleton regulation. In addition, the GSC progeny differentiation defects caused by defective ECs are often associated with BMP signaling elevation, indicating that preventing BMP signaling is a general functional feature of the differentiation niche. Lastly, exon junction complex (EJC) components, which are essential for mRNA splicing, are required in ECs to promote GSC progeny differentiation by maintaining ECs and preventing BMP signaling. Therefore, this study has identified the major regulators of the differentiation niche, which provides important insights into how stem cell progeny differentiation is extrinsically controlled.
        In the Drosophila ovary, escort cells (ECs) extrinsically control germline stem cell (GSC) maintenance and progeny differentiation. However, the underlying mechanisms remain poorly understood. In this study,we identified 173 EC genes for their roles in controlling GSC maintenance and progeny differentiation by using an in vivo systematic RNAi approach. Of the identified genes, 10 and 163 are required in ECs to promote GSC maintenance and progeny differentiation, respectively. The genes required for progeny differentiation fall into different functional categories, including transcription, mRNA splicing, protein degradation, signal transduction and cytoskeleton regulation. In addition, the GSC progeny differentiation defects caused by defective ECs are often associated with BMP signaling elevation, indicating that preventing BMP signaling is a general functional feature of the differentiation niche. Lastly, exon junction complex (EJC) components, which are essential for mRNA splicing, are required in ECs to promote GSC progeny differentiation by maintaining ECs and preventing BMP signaling. Therefore, this study has identified the major regulators of the differentiation niche, which provides important insights into how stem cell progeny differentiation is extrinsically controlled.
引文
Billuart,P.,Winter,C.G.,Maresh,A.,Zhao,X.S.,Luo,L.Q.,2001.Regulating axon branch stability:the role of p190 RhoGAP in repressing a retraction signaling pathway.Cell 107,195e207.
    Casanueva,M.O.,Ferguson,E.L.,2004.Germline stem cell number in the Drosophila ovary is regulated by redundant mechanisms that control Dpp signaling.Development 131,1881e1890.
    Castrillon,D.H.,Wasserman,S.A.,1994.Diaphanous is required for cytokinesis in Drosophila and shares domains of similarity with the products of the limb deformity gene.Development 120,3367e3377.
    Chen,D.H.,McKearin,D.M.,2003a.A discrete transcriptional silencer in the bam gene determines asymmetric division of the Drosophila germline stem cell.Development 130,1159e1170.
    Chen,D.H.,McKearin,D.,2003b.Dpp signaling silences bam transcription directly to establish asymmetric divisions of germline stem cells.Curr.Biol.13,1786e1791.
    Chen,S.Y.,Kaneko,S.,Ma,X.,Chen,X.C.,Ip,Y.T.,Xu,L.,Xie,T.,2010.Lissencephaly-1controls germline stem cell self-renewal through modulating bone morphogenetic protein signaling and niche adhesion.Proc.Natl.Acad.Sci.U.S.A.107,19939e19944.
    Decotto,E.,Spradling,A.C.,2005.The Drosophila ovarian and testis stem cell niches:similar somatic stem cells and signals.Dev.Cell 9,501e510.
    DeFalco,T.,Potter,S.J.,Williams,A.V.,Waller,B.,Kan,M.J.,Capel,B.,2015.Macrophages contribute to the spermatogonial niche in the adult testis.Cell Rep.12,1107e1119.
    Eliazer,S.,Shalaby,N.A.,Buszczak,M.,2011.Loss of lysine-specific demethylase 1nonautonomously causes stem cell tumors in the Drosophila ovary.Proc.Natl.Acad.Sci.U.S.A.108,7064e7069.
    Eliazer,S.,Palacios,V.,Wang,Z.H.,Kollipara,R.K.,Kittler,R.,Buszczak,M.,2014.Lsd1restricts the number of germline stem cells by regulating multiple targets in escort cells.PLoS Genet.10,e1004200.
    Fu,Z.W.,Geng,C.Y.,Wang,H.,Yang,Z.H.,Weng,C.J.,Li,H.,Deng,L.M.,Liu,L.P.,Liu,N.,Ni,J.Q.,Xie,T.,2015.Twin promotes the maintenance and differentiation of germline stem cell lineage through modulation of multiple pathways.Cell Rep.13,1366e1379.
    Fuller,M.T.,Spradling,A.C.,2007.Male and female Drosophila germline stem cells:two versions of immortality.Science 316,402e404.
    Gilboa,L.,Lehmann,R.,2004.Repression of primordial germ cell differentiation parallels germ line stem cell maintenance.Curr.Biol.14,981e986.
    Hayashi,R.,Handler,D.,Ish-Horowicz,D.,Brennecke,J.,2014.The exon junction complex is required for definition and excision of neighboring introns in Drosophila.Genes Dev.28,1772e1785.
    Hudson,A.M.,Cooley,L.,2002.A subset of dynamic actin rearrangements in Drosophila requires the Arp2/3 complex.J.Cell Biol.156,677e687.
    Jin,Z.G.,Flynt,A.S.,Lai,E.C.,2013.Drosophila piwi mutants exhibit germline stem cell tumors that are sustained by elevated Dpp signaling.Curr.Biol.23,1442e1448.
    Kai,T.S.,Spradling,A.,2003.An empty Drosophila stem cell niche reactivates the proliferation of ectopic cells.Proc.Natl.Acad.Sci.U.S.A.100,4633e4638.
    Kirilly,D.,Wang,S.,Xie,T.,2011.Self-maintained escort cells form a germline stem cell differentiation niche.Development 138,5087e5097.
    Konig,A.,Shcherbata,H.R.,2015.Soma influences GSC progeny differentiation via the cell adhesion-mediated steroid-let-7-Wingless signaling cascade that regulates chromatin dynamics.Biol.Open 4,285e300.
    Lee,T.,Luo,L.,1999.Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis.Neuron 22,451e461.
    Li,C.Y.,Kan,L.J.,Chen,Y.,Zheng,X.D.,Li,W.N.,Zhang,W.X.,Cao,L.,Lin,X.H.,Ji,S.M.,Huang,S.J.,Zhang,G.Q.,Liu,X.H.,Tao,Y.,Wu,S.A.,Chen,D.H.,2015.Ci antagonizes Hippo signaling in the somatic cells of the ovary to drive germline stem cell differentiation.Cell Res.25,1152e1170.
    Li,L.H.,Xie,T.,2005.Stem cell niche:structure and function.Annu.Rev.Cell Dev.Biol.21,605e631.
    Li,X.W.,Yang,F.,Chen,H.Y.,Deng,B.W.,Li,X.H.,Xi,R.W.,2016.Control of germline stem cell differentiation by Polycomb and Trithorax group genes in the niche microenvironment.Development 143,3449e3458.
    Li,Y.,Minor,N.T.,Park,J.K.,McKearin,D.M.,Maines,J.Z.,2009.Bam and Bgcn antagonize Nanos-dependent germ-line stem cell maintenance.Proc.Natl.Acad.Sci.U.S.A.106,9304e9309.
    Li,Y.,Zhang,Q.,Carreira-Rosario,A.,Maines,J.Z.,McKearin,D.M.,Buszczak,M.,2013.Mei-P26 cooperates with bam,Bgcn and Sxl to promote early germline development in the Drosophila ovary.PLoS One 8,e58301.
    Lin,H.,Spradling,A.C.,1993.Germline stem-cell division and egg chamber development in transplanted Drosophila germaria.Dev.Biol.159,140e152.
    Lin,H.,Yue,L.,Spradling,A.C.,1994.The Drosophila fusome,a germline-specific organelle,contains membrane skeletal proteins and functions in cyst formation.Development 120,947e956.
    Liu,M.,Lim,T.M.,Cai,Y.,2010.The Drosophila female germline stem cell lineage acts to spatially restrict DPP function within the niche.Sci.Signal.3,ra57.
    Liu,Z.,Zhong,G.H.,Chai,P.C.,Luo,L.C.,Liu,S.,Yang,Y.,Baeg,G.H.,Cai,Y.,2015.Coordinated niche-associated signals promote germline homeostasis in the Drosophila ovary.J.Cell Biol.211,469e484.
    Lu,T.L.,Wang,S.,Gao,Y.,Mao,Y.,Yang,Z.H.,Liu,L.P.,Song,X.Q.,Ni,J.Q.,Xie,T.,2015.COP9-Hedgehog axis regulates the function of the germline stem cell progeny differentiation niche in the Drosophila ovary.Development 142,4242e4252.
    Luo,L.C.,Wang,H.S.,Fan,C.,Liu,S.,Cai,Y.,2015.Wnt ligands regulate Tkv expression to constrain Dpp activity in the Drosophila ovarian stem cell niche.J.Cell Biol.209,595e608.
    Ma,X.,Wang,S.,Do,T.,Song,X.Q.,Inaba,M.,Nishimoto,Y.,Liu,L.P.,Gao,Y.,Mao,Y.,Li,H.,McDowell,W.,Park,J.,Malanowski,K.,Peak,A.,Perera,A.,Li,H.,Gaudenz,K.,Haug,J.,Yamashita,Y.,Lin,H.F.,Ni,J.Q.,Xie,T.,2014.Piwi is required in multiple cell types to control germline stem cell lineage development in the Drosophila ovary.PLoS One 9,e90267.
    Maimon,I.,Popliker,M.,Gilboa,L.,2014.Without children is required for Statmediated zfh1 transcription and for germline stem cell differentiation.Development 141,2602e2610.
    Malone,C.D.,Mestdagh,C.,Akhtar,J.,Kreim,N.,Deinhard,P.,Sachidanandam,R.,Treisman,J.,Roignant,J.Y.,2014.The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript.Genes Dev.28,1786e1799.
    Margolis,J.,Spradling,A.,1995.Identification and behavior of epithelial stem cells in the Drosophila ovary.Development 121,3797e3807.
    McKearin,D.,Ohlstein,B.,1995.A role for the Drosophila bag-of-marbles protein in the differentiation of cystoblasts from germline stem cells.Development 121,2937e2947.
    McKearin,D.M.,Spradling,A.C.,1990.bag-of-marbles:a Drosophila gene required to initiate both male and female gametogenesis.Genes Dev.4,2242e2251.
    Morris,L.X.,Spradling,A.C.,2011.Long-term live imaging provides new insight into stem cell regulation and germline-soma coordination in the Drosophila ovary.Development 138,2207e2215.
    Morris,L.X.,Spradling,A.C.,2012.Steroid signaling within Drosophila ovarian epithelial cells sex-specifically modulates early germ cell development and meiotic entry.PLoS One 7,e46109.
    Morrison,S.J.,Spradling,A.C.,2008.Stem cells and niches:mechanisms that promote stem cell maintenance throughout life.Cell 132,598e611.
    Mottier-Pavie,V.I.,Palacios,V.,Eliazer,S.,Scoggin,S.,Buszczak,M.,2016.The Wnt pathway limits BMP signaling outside of the germline stem cell niche in Drosophila ovaries.Dev.Biol.417,50e62.
    Mukai,M.,Kato,H.,Hira,S.,Nakamura,K.,Kita,H.,Kobayashi,S.,2011.Innexin2 gap junctions in somatic support cells are required for cyst formation and for egg chamber formation in Drosophila.Mech.Dev.128,510e523.
    Ni,J.Q.,Markstein,M.,Binari,R.,Pfeiffer,B.,Liu,L.P.,Villalta,C.,Booker,M.,Perkins,L.,Perrimon,N.,2008.Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster.Nat.Methods 5,49e51.
    Ni,J.Q.,Zhou,R.,Czech,B.,Liu,L.P.,Holderbaum,L.,Yang-Zhou,D.H.,Shim,H.S.,Tao,R.,Handler,D.,Karpowicz,P.,Binari,R.,Booker,M.,Brennecke,J.,Perkins,L.A.,Hannon,G.J.,Perrimon,N.,2011.A genome-scale shRNA resource for transgenic RNAi in Drosophila.Nat.Methods 8,405e407.
    Nir,O.,Bakal,C.,Perrimon,N.,Berger,B.,2010.Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen.Genome Res.20,372e380.
    Nowotarski,S.H.,McKeon,N.,Moser,R.J.,Peifer,M.,2014.The actin regulators Enabled and Diaphanous direct distinct protrusive behaviors in different tissues during Drosophila development.Mol.Biol.Cell 25,3147e3165.
    Ohlstein,B.,McKearin,D.,1997.Ectopic expression of the Drosophila Bam protein eliminates oogenic germline stem cells.Development 124,3651e3662.
    Ohlstein,B.,Lavoie,C.A.,Vef,O.,Gateff,E.,McKearin,D.M.,2000.The Drosophila cystoblast differentiation factor,benign gonial cell neoplasm,is related to DExH-box proteins and interacts genetically with bag-of-marbles.Genetics 155,1809e1819.
    Pan,L.,Wang,S.,Lu,T.L.,Weng,C.J.,Song,X.Q.,Park,J.K.,Sun,J.,Yang,Z.H.,Yu,J.J.,Tang,H.,McKearin,D.M.,Chamovitz,D.A.,Ni,J.Q.,Xie,T.,2014.Protein competition switches the function of COP9 from self-renewal to differentiation.Nature 514,233.
    Prokopenko,S.N.,Brumby,A.,O'Keefe,L.,Prior,L.,He,Y.C.,Saint,R.,Bellen,H.J.,1999.A putative exchange factor for Rho1 GTPase is required-for initiation of cytokinesis in Drosophila.Genes Dev.13,2301e2314.
    Qiao,H.H.,Wang,F.,Xu,R.G.,Sun,J.,Zhu,R.B.,Mao,D.C.,Ren,X.J.,Wang,X.,Jia,Y.,Peng,P.,Shen,D.,Liu,L.P.,Chang,Z.J.,Wang,G.R.,Li,S.,Ji,J.Y.,Liu,Q.F.,Ni,J.Q.,2018.An efficient and multiple target transgenic RNAi technique with low toxicity in Drosophila.Nat.Commun.9,4160.
    Schulz,C.,Wood,C.G.,Jones,D.L.,Tazuke,S.I.,Fuller,M.T.,2002.Signaling from germ cells mediated by the rhomboid homolog stet organizes encapsulation by somatic support cells.Development 129,4523e4534.
    Schumacher,S.,Gryzik,T.,Tannebaum,S.,Muller,H.A.J.,2004.The RhoGEF Pebble is required for cell shape changes during cell migration triggered by the Drosophila FGF receptor Heartless.Development 131,2631e2640.
    Shen,R.,Weng,C.,Yu,J.,Xie,T.,2009.eIF4A controls germline stem cell selfrenewal by directly inhibiting BAM function in the Drosophila ovary.Proc.Natl.Acad.Sci.U.S.A.106,11623e11628.
    Song,X.Q.,Wong,M.D.,Kawase,E.,Xi,R.,Ding,B.C.,McCarthy,J.J.,Xie,T.,2004.Bmp signals from niche cells directly repress transcription of a differentiationpromoting gene,bag of marbles,in germline stem cells in the Drosophila ovary.Development 131,1353e1364.
    Song,X.Q.,Zhu,C.H.,Doan,C.,Xie,T.,2002.Germline,stem cells anchored by adherens junctions in the Drosophila ovary niches.Science 296,1855e1857.
    Spradling,A.C.,1993.Developmental genetics of oogenesis.In:Bate,M.,Martinez Arias,A.(Eds.),The Development of Drosophila melanogaster.Cold Spring Harbor Laboratory Press,Cold Spring Harbor,pp.1e71.
    Sun,J.,Wei,H.M.,Xu,J.,Chang,J.F.,Yang,Z.,Ren,X.,Lv,W.W.,Liu,L.P.,Pan,L.X.,Wang,X.,Qiao,H.H.,Zhu,B.,Ji,J.Y.,Yan,D.,Xie,T.,Sun,F.L.,Ni,J.Q.,2015.Histone H1-mediated epigenetic regulation controls germline stem cell self-renewal by modulating H4K16 acetylation.Nat.Commun.6,8856.
    Van Doren,M.,Williamson,A.L.,Lehmann,R.,1998.Regulation of zygotic gene expression in Drosophila primordial germ cells.Curr.Biol.8,243e246.
    Vartiainen,M.K.,Machesky,L.M.,2004.The WASP-Arp2/3 pathway:genetic insights.Curr.Opin.Cell Biol.16,174e181.
    Wang,S.,Gao,Y.,Song,X.Q.,Ma,X.,Zhu,X.J.,Mao,Y.,Yang,Z.H.,Ni,J.Q.,Li,H.,Malanowski,K.E.,Anoja,P.,Park,J.,Haug,J.,Xie,T.,2015.Wnt signalingmediated redox regulation maintains the germ line stem cell differentiation niche.eLife 4,e08174.
    Wang,X.X.,Pan,L.,Wang,S.,Zhou,J.,McDowell,W.,Park,J.,Haug,J.,Staehling,K.,Tang,H.,Xie,T.,2011.Histone H3K9 trimethylase Eggless controls germline stem cell maintenance and differentiation.PLo S Genet.7,e1002426.
    Xie,T.,2013.Control of germline stem cell self-renewal and differentiation in the Drosophila ovary:concerted actions of niche signals and intrinsic factors.Wiley Interdiscip.Rev.Dev.Biol.2,261e273.
    Xie,T.,Spradling,A.C.,1998.Decapentaplegic is essential for the maintenance and division of germline stem cells in the Drosophila ovary.Cell 94,251e260.
    Xie,T.,Spradling,A.C.,2000.A niche maintaining germ line stem cells in the Drosophila ovary.Science 290,328e330.
    Xie,T.,Spradling,A.C.,2001.The Drosophila ovary:an in vivo stem cell system.In:Marshak,D.R.,Gardner,R.L.,Gottlieb,D.(Eds.),Stem Cell Biology.Cold Spring Harbor Laboratory Press,Cold Spring Harbor,N.Y.,pp.129e148.
    Yang,Z.H.,Sun,J.,Hu,Y.Z.,Wang,F.,Wang,X.,Qiao,H.H.,Xu,J.,Mao,D.C.,Ren,X.J.,Pan,L.X.,Xu,R.G.,Xu,B.W.,Zhang,Y.F.,Li,H.Y.,Miao,W.,Hu,Y.H.,Chang,Z.J.,Wang,D.,Li,H.T.,Chang,Z.,Liu,L.P.,Liu,Q.F.,Ni,J.Q.,2017.Histone H1 defect in escort cells triggers germline tumor in Drosophila ovary.Dev.Biol.424,40e49.
    Zallen,J.A.,Cohen,Y.,Hudson,A.M.,Cooley,L.,Wieschaus,E.,Schejter,E.D.,2002.SCAR is a primary regulator of Arp2/3-dependent morphological events in Drosophila.J.Cell Biol.156,689e701.

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