三种黄鳝RAPD标记和遗传多样性分析
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摘要
本文应用随机扩增多态DNA(RAPD)技术对黄鳝属(Monopterus)中产自缅甸的山黄鳝(M.cuchia),印度尼两亚的穴黄鳝(M.fossorius),及中国的黄鳝(M.albus),共12个个体基因组DNA的遗传标记进行分析。先用12个个体的混合DNA对OPA、OPB和OPD三个系列40个随机引物进行筛选,有35个引物获得了扩增谱带,30个引物获得了重复性良好的谱带。本试验选用筛选出的30个引物分别对三种黄鳝的12个个体核DNA进行PCR扩增,其扩增产物经琼脂糖凝胶电泳分离后,共获得315个扩增片段,长度为250~5417bp,具有良好的重复性。每个引物在种间均能扩增出DNA多态性片段,每条扩增条带含有2~16个大小不等的片段。30个引物均可将1种、2种甚至3种黄鳝分别区别开来。检出三种黄鳝特异性片段87个,其中M.cuchia有25个,M.fossorius有33个,M.albus有29个。
     从所检测到的位点中,三种黄鳝种群间的多态位点比例(P)为80.32%,遗传多样性指数(H)为0.1575;种群内的多态位点比例和遗传多样性指数在M.albus中为33.53%、0.0801;在M.cuchia中为48.61%、0.0645,在M.fossorius中为44.88%、0.1380。结果表明,种群间和种群内都具有较高的遗传变异,种群间的遗传变异高于种群内的。
     通过DPS2003种群遗传分析软件包计算显示:M.cuchia个体间遗传距离(D)最小为0.4505、最大为0.8356,平均为0.5842:M.fossorius个体间遗传距离最小为0.1400、最大为0.9048,平均为0.5250;M.albus个体间遗传距离最小为0.2500、最大为0.7647,平均为0.5293。M.albus与M.fossorius的遗传距离最大,为0.7415;M.cuchia与M.fossorius的遗传距离次之,为0.7035:M.cuchia与M.albus的遗传距离最小,为0.6860。根据遗传距离指数,用UPGMA方法进行聚类分析,构建了三种黄鳝亲缘关系聚类图。图中所示三种黄鳝中M.cuchia与M.albus亲缘关系最近,M.fossorius与其余两种相对要远。
The samples of three species of synbranchi form eels, Monopterus cuchia (Hamilton, 1822), M fossorius (Nayar, 1952) and M. albus (Zuiew,793) were collected from Yangon of Myanmar, Indonesia and YuanJiang County, Hunan Province,China respectively. Randomly amplified polymorphic DNA (RAPD) technique is usded to analyse the specific genetic markers and their genefic diversity of the wild grouper population of four individuals from each species.The reactions were performed through 94 #, pre-denaturing for 5 min, then 45 cycles of 94 # denaturing for 1 min, 36# annealing for 1 min and 72# polymerizing for 2 min; The complete extention was conducted at 72 # for 7 min. 40 primers of OPA, OPB and OPD were screened, 30 primers produced reproducible fingerprints with the molecular weight varying from 250 bp to 5417 bp. The number of RAPD markers amplified by each primer varied from 2 to 16. Those interpretable
    patterns generated by 30 primers were used as the genetic markers to discriminate the differentiation of the three species. 87 out of 315 amplified fragments were distinctive for the three species, 33 were from M. fossorius, 25 and 29 were from M. cuchia and M. albus respectively. The percentage of polymorphic ioci(P) among inter population of three species is 80.32%. The genetic diversity index (H) among inter population of three species is 0.157 5. Based on the RAPD data, the genetic distances among these three species of Monopterus, were computed by using DPS2003 software package. As result, the biggest genetic distance occurres between M. fossorius and M.albu with a value of 0.7415, while the smallest genetic distance with a value of 0.6860 comes about between M. cuchia and M. albus, and the genetic distance between M. cuchia and M. fossorius is 0.7035. The cluster analysis of the above three species was performed with
    UPGMA algorithm over their genetic distances. The dendrogram of these three species was constructed.
引文
[1] Rosen,D.E & P.Hgreenwood. A fourth neotropical species of synbranchid eel and the phylogeny and systematics of synbranchiform eel fishes[J]. Bull. Am. Mus. nat. hist.1976,157 (1): 1-69.
    [2] 温小波,李建国,周永平.野生乌鳢、鲶、黄颡鱼和黄鳝的脂类及脂肪酸组成比较[J].湖北农学院学报,2003(6):170~173.
    [3] 朱松泉.中国淡水鱼类检索[M].南京:江苏科技出版社,1995.
    [4] 史为良.内陆水域鱼类增殖与养殖学[M].北京:中国农业出版社,1998.
    [5] 李思发.主要养殖鱼类种质资源研究进展[J].水产学报.1993,17(4):344-358.
    [6] Lewontin R C .Amolecular approach to the study of genetic hetrozygosity in natura populations Ⅱ .Amount of variation and daegree of hetrozygisity in natural populations of Drosphila pseudoobscura[J].Genetics. 1966, 54: 595~609.
    [7] 王宏伟,王安利,王维娜.鱼类同工酶研究进展.动物学报,(专刊):101~105.
    [8] 刘萍.DNA标记技术在海洋生物种质资源开发和保护中的应用[J].中国水产科学,2000(2):86~89.
    [9] 李思发,等.长江、珠江、黑龙江鲢、鳙、草鱼种质资源研究[J].上海:科技出版社,1990:94-101.
    [10] 王宏伟,等.鱼类同工酶研究进展.动物学报,2001(专刊47):101~105.
    [11] 吴力钊,王祖熊.草鱼同工酶发育遗传学研究.Ⅰ.早期发育过程中的同工酶分析.遗传学报,1987(5):278~286.
    [12] Qu Yan-chun,Deng Zhang-yan, Liu gui-Ian.The Detection of SNPs and the Prospect of its Use in Animal Husbandry, Animal Science Abroad Aug.2001(4):39-41.
    [13] 王可玲,等.中国近海带鱼种群生化遗传结构及其鉴别的研究[J]..海洋学报(中文版),1994,(1):93~104.
    [14] 赵金良,李思发.长江中下游鲢、鳙、草鱼、青鱼种群分化的同工酶分析[J].水产学报,1996,(2):104~110
    [15] 吴力钊,王祖熊.草鱼同工酶发育遗传学研究.Ⅱ.早期发育过程中的同工酶分析[J].遗传学报,1987(5):387~394.
    [16] 汪亚平,张国华.鲫鱼种群间同工酶的比较研究[J].水生生物学报,1996,(3):287-288.
    [17] 谢浩,等.对三种绒螯蟹亲缘关系的研究[J].水生生物学报,1996(2):120~126.
    [18] Karlsa, Avise J. C. Balancing selection at allozyme loci in oyster: implication from nuclear AFLP's [J]. Science, 1992, 256:100~101.
    [19] Williams J.K.,Kubelik A.R.,Livak K.J.et al..DNA polymorphisms amplified by
    
    arbitrary primers are useful as genetics markers[J]. Nucleic Acids Res,1990 (18):6531~6535.
    [20] Hadrys,H.M, Balick, Schierwater. Applications o f random a mplified p olimorphic DNA (RAPD) in molecular ecology [J]. Molecular Ecology, 1992,1:55-63.
    [21] Carlson, J. E., et al. Segregation of random amplified DNA markers in F_1 progeny confers [J]. Theoretical and Applied Genetics,1991,83:194-200.
    [22] Scott, M. P. Haymes, K. M., Willims, S. M. Parentage analysis using RAPD PCR[J]. Nucle Acid esearch,1993,20:54-93.
    [23] 乔德亮.,RAPD技术在水产动物种质资源研究中的应用[J].水产科技情报,2001(1):112-114。
    [24] 王晓梅.RAPD技术在水产经济动物种质资源和遗传育种研究中的应用[J].天津农学院学报,1999(4):18-22.
    [25] 刘萍.DNA标记技术在海洋生物种质资源开发和保护中的应用[J].中国水产科学,2000(2):86~89.
    [26] 易乐飞,刘楚吾,吕立强.约氏笛鲷自然群体遗传多样性的RAPD分析[J].中国水产科学2002(4):379~381.
    [27] 张四明,筹.长江水系鲢和草鱼遗传结构及变异性的RAPD研究[J].水生生物学报,2001(4):326~330.
    [28] 章怀云.草鱼和鲤群体遗传变异的RAPD研究[J].水生生物学报,1998,(2):168~173.
    [29] 张德春,张锡元,杨代淑.长江鳙遗传多样性的研究[J].武汉大学学报(自然科学版)1999(6):857~860.
    [30] 权洁霞,戴继勋.梭鱼人工养殖群体与自然群体的随机多态性DNA(RAPD)分析[J].海洋学报,2000(5):82~87。
    [31] 郑莲,刘楚吾.蜂巢石斑鱼随机扩增多态性DNA的初步研究[J].湛江海洋大学学报,2002(4):14~18.
    [32] 董在杰,等.兴国红鲤和散鳞镜鲤杂种优势的RAPD分析[J].上海水产大学学报,1999,8(1):31~35.
    [33] 郑光明,朱新平,张跃.RAPD技术鉴定3种鲮鱼的研究[J].华中农业大学学报,1999(4):371-374.
    [34] Bardakci F, et al. Application of RAPD technique in tilapiafish : species and subspecies identification[J]. Hered-ity, 1994, 73(2): 117~123.
    [35] 汪亚平,陈宜瑜.五种鲤科鱼类RAPD分析兼论(鱼句)鲫的系统位置[J].水生生物学报,1997,21(3):262—267.
    [36] Johnson S L, et al . Identification of RAPD primers that reveal extensive polym
    
    orphisms between laboratory strains of zebrafish[J]. Genom ics, 1994, 19(1):152~156.
    [37] Smith R J., et al. Genetice vidence for two species of tarakihi (Teleostei: Cheilodactylidae: Nemadaclylus) in New Zealand waters[J]. New Zealand Journal of Marine and Freshwater Research, 1996, 30(2):209-220.
    [38] Dinesh K R, et al. Genetic variation inferred from RAPD fingerprinting in three species of tilapia[J]. Aquaculture, 1996, 4(1):19~30.
    [39] Nilsson J.,Schmita M., Random amplified polymorphic DNA(RAPD) in Arctic Char[J]. Nordic J. Freshwater Res., 1995, 71:372 377.
    [40] 邓杯,等.十种常见淡水鱼类的RAPD鉴定[J].淡水渔业1998(1):8-10.
    [41] 李学英,王大忠,廖吉文.长江流域南方鲇和鲇分子遗传标记的建立[J].遵义医学院学报,2001(3):217-218.
    [42] 薛国雄,刘棘,刘洁.三江水系草鱼种群RAPD分析[J].中国水产科学,1998(1):1-5.
    [43] 宋平,等.依据RAPD片段克隆而建立的团头鲂PCR鉴定法[J].武汉大学学报(理学版),2001,47(4):493~497.
    [44] 宋平,等.普通鲫鱼的RAPD标记及其遗传多样性[J].武汉大学学报(自然科学版),2000,46(6):721~725.
    [45] 宋平,等.黄颡鱼RAPD标记及其遗传多样性的初步分析[J].武汉大学学报(理学版),2001,47(2):233~237.
    [46] 王剑伟,王伟,崔迎松.野生和近交稀有鱼句鲫的遗传多样性[J].生物多样性,2000,8(3):241~247.
    [47] 何舜平,王伟,陈宜瑜.低等鲤科鱼类RAPD分析及系统发育研究[J].水生生物学报,2000,24(3):101—106.
    [48] 赵凯.青海湖裸鲤与鲤,鲫,草鱼的随机扩增多态DNA分析[J].淡水渔业,2001(5):49-51.
    [49] 陈金平,等.绥芬河三块鱼属鱼类和东北雅罗鱼亲缘关系的RAPD分析[J].中国水产科学,2002(1):1-4.
    [50] 何舜平,汪亚平,陈宜瑜.五种鲤科鱼类的RAPD分析兼论稀有鱼句鲫的系统位置[J].水生生物学报,1997(3):262~267.
    [51] 赵宗胜,等.应用RAPD分析家禽不同种属间杂交可行性的研究[J].黑龙江畜牧兽医,2002(12):11-12.
    [52] 王伟,何舜平,中岛经夫.日本产和中国产中华细鲫的RAPD分析[J].水生生物学报,2001,25(4):358—361.
    [53] 陈自明,陈毅峰.用RAPD技术对特化等级裂腹鱼类亲缘关系的探讨[J].动物
    
    学研究,2000(4):262~268.
    [54] Elo, K., et al. In heritance of RAPD markers and detection of interspecifichy bridization with brown trout and Atlanticsalmon[J]. Aquaculture, 1997, 152(1~4):55~65.
    [55] 邹曙明筹.用RAPD方法研究草鱼、柏氏鲤和三个地理种群鲤的亲缘关系[J].中国水产科学,2000,7(1):6~11.
    [56] 王晓梅,等.用RAPD技术检测野生鲫鱼和四个金鱼代表品种的基因组DNA多态性[J].遗传研究,1998,20(5):7~11.
    [57] 夏德全,等.用RAPD方法分析太湖大银鱼、太湖新银鱼和寡齿新银鱼的亲缘关系[J].中国水产科学,2000,(1):12~15.
    [58] 王俐,等.鲫鱼人工杂交试验中雄核发育现象的RAPD试验证据[J].复旦学报(自然科学版),1997,36(5):565~570.
    [59] 周莉,樊连春,桂建芳.银鲫复合种外源遗传物质整入的RAPD分析[J].水生生物学报,1998,22(4):301—306.
    [60] 刘必谦,王亚军,周湘池.鲤鲫杂交F_1及其亲本RAPD标记[J].宁波大学学报(理工版)2000(4):31-34.
    [61] Wada, H., et al. Genetic linkage map of a fish: the Japanese medaka Oryzias latipes Molecular[J]. Marine Biolo-gy and Biotechnology, 1995, 4(3):269~274.
    [62] Postlethwait, J.H., et al. A genetic linkage map for the zebrafish[J]. Science, 1994, 264:699~703.
    [63] Corley-Smith G E, Lim G. J., Brandhorst B. R Production of androgenetic Zebrafish (Daniorerio)[J]. Genetics, 1996, 142:1265—1278.
    [64] 姚纪花,楼允东.三种群银鲫的RAPD分析初报[J].上海水产大学学报,2000 (1):11-14.
    [65] 孙效文、梁利群.鲤鱼的遗传连锁图谱(初级)[J].中国水产科学,2000,7(1):1~5.
    [66] Allegrucci, G, et al.Acclimation of the European sea bass to freshwater: Monitoring genetic changes by RAPD polymerase chain reaction to detect DNA polymorphisms[J]. Marine Biology, 1995, 121(4):591~599.
    [67] 陈洪等.RAPD技术在异精激发方正银鲫比较研究中的应用[J].科学通报,1994, 39(7):661~663.
    [68] 张德春,等.建鲤与兴国红鲤RAPD分子标记[J].淡水渔业,1999(11):32~35.
    [69] 贾海波,周莉,桂建芳.两个人工雌核发育红白锦鲤群体的RAPD标记分析[J].水生生物学报,2002(1):1-6.
    [70] 夏德全,等.用RAPD分析对罗非鱼遗传变异的研究及其对杂种优势的应用[J].水
    
    产学报,1999,23(1):27~31.
    [71] 胡隐昌,等.尼罗罗非鱼的RAPD标及遗传多样性分析[J].华中科技大学学报(自然科学版),2002(5):94-97.
    [72] Bielawski, J. P., et al. Randomly amplified polymorphic DNA (RAPD) analysis of Atlantic coast striped bass[J]. Heredity, 1997 (1):32~40.
    [73] 王晓梅,等.鲫鱼种群的随机扩增多态DNA与遗传多样性分析[J].中国水产科学,1999(2):26-28.
    [74] 余先觉,周暾,李渝成.中国淡水鱼类染色体[J].北京:科学出版社,1989.17.2~9.
    [75] 邱涛,等.用RAPD技术识别中华绒螯蟹性别差异[J].水产学报,1998,22(2):175~177.
    [76] 张四明,筹.中华鲟随机扩增多态性DNA及遗传多样性研究[J].海洋与湖沼,2000,31(1):1-7.
    [77] 梁利群,孙效文,门学春.RAPD技术分析荷包红鲤抗寒品系与亲本的基因组变化[J].中国水产科学,1998,5(1):6~9.
    [78] 梁利群,孙孝文,沈俊宝.研究简报鲤鱼抗寒性状的RAPD分析[J].中国水产科学1997(4):89-91.
    [79] 刘萍,孟宪红,孔杰.对虾抗病性状遗传标记的RAPD分析[J].水产学报,2002(3):270-274.
    [80] 萨姆布鲁克E.F费里奇T.曼尼阿蒂斯等.《分子克隆》[M],第二版,464-468.
    [81] Lynch, M. The similarity index and DNA finger Printing[J].Mol Biol Evol, 1990, 7:478~487
    [82] Wachira F.N, Waugh, R., Hackett, C.A, et al. Detection of Genetic diversity intea (Camelliasinensis) using RAPD markers[J].Genome, 1995, 38:201~210.
    [83] 刘萍,孟宪红,庄志猛.3种对虾种间RAPD遗传标记[J].海洋水产研究,2002(2):1-6.
    [84] 王剑伟,王伟,崔迎松.野生和近交稀有鱼句鲫的遗传多样性[J].生物多样性,2000(3):241~247.
    [85] 宋平等.普通鲫鱼的RAPD标记及其遗传多样性[J].武汉大学学报(自然科学版),2000,46(6):721~725。
    [86] 宋平,等.黄颡鱼RAPD标记及其遗传多样性的初步分析[J].武汉大学学报(理学版),2001(2):233~237.
    [87] 贾海波,周莉,桂建芳.两个人工雌核发育红白锦鲤群体的RAPD标记分析[J].水生生物学报,2002(1):120~126.
    [88] Tajima F. Evolutionary Re lationship of DNA sequences in finite
    
    Populations[J].Genetics, 1983,105:437—445.
    [89] Dall,B.J.Hill,P.C.Rothlisberg,D.J.Staples,陈楠生等译.对虾生物学[M].青岛海洋大学出版社,1992年2月第一版.
    [90] 梁华芳.我国9种养殖对虾形态特征之比较[J].湛江海洋大学学报,2001,21(2):13~18.
    [91] Thormann, C.E., Ferreira, M.E, Camargo L.E.A ,et al. Comparison of RFLP and RAPD markers toestimating genetic crelationships within and smon gcruciferous species[J].Theor.Appl. Genet, 1994,88:973~980.
    [92] Demeke, T.R.P, Adams, R.R, Chibbar, R. Potential taxonomic use of random amplified PolymorphicDNA(RAPD):Acase study in Brassica[J].Theor Apple Genet, 1992,84:990~994.
    [93] 朱晓平.蛋鸡不同品系RAPD的遗传分析.东北农业大学硕士论文,1997.
    [94] 张沅.家畜育种学[M].北京:中国农业出版社,2001,10月第1版:357~361.
    [95] 刘萍.对虾抗病性状遗传标记的RAPD分析[J].水产学报,2002(3):271~274.
    [96] Garcia D K, Dhar A K, Alcivar Warren A. Molecular analysis of a RAPD marker(B20) reveal two micosatellites and differential Mrna expression in Penaeus vannamei[J] .Mol. Mar .Biol .Biptech .1996,5(1):71-83.
    [97] Alcivar Warren A, Overstreet, R.M, Dhar A K. Genetic susceptibility of cultured shrimp (Penaeus vannamei) to infection hypodermal and hematopoietic necrosis virus and Baculovious penaei: Possible relationship with growth and metabolic Gene expression[J]. J. lnvertebr Pathol,1997, 70(3): 190-197.
    [98] 沈俊宝等.荷包红鲤抗寒品系的筛选[J].淡水渔业,1988(3):314~317.
    [99] 贺顺连.黄鳝疾病研究现状[J].内陆水产,2002(11):40-42.

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