不同生态条件下籼粳交后代亚种分化研究及环境响应
|
摘要
以利用不同亚种有利基因为目标的籼粳稻杂交是水稻重要育种方法,在迄今国内外对亚洲栽培稻分类、起源、演化以及籼粳稻杂交育种进行广泛研究并取得重大成果的基础上,本课题以典型籼粳稻杂交(七山占×秋光)重组自交系(F6)和分离世代(F2和F3)群体为试材,在不同生态环境下种植(华南籼稻区广东和东北粳稻区辽宁,F2分别采用混合法、一粒传法和系谱法处理),采用形态标记(程氏指数法)和分子标记(InDels和ILPs)相结合的方法,比较研究不同生态条件下形态分化、遗传分化、经济性状的差异,明确不同生态条件下籼粳稻杂交后代亚种分化规律及其与经济性状的关系,揭示自然选择与人工选择对亚种间杂交后代籼粳分化的影响及其遗传基础,探索利用亚种分化与经济性状的关系评估不同生态地区籼粳适应性的可能性与方法,为提高籼粳稻杂交育种效率提供科学依据,为实施“籼稻改粳稻”提供理论指导。
1.在低世代群体中,各群体亚种属性都呈连续性变异且正态分布,并且两生态地区F2代群体间、两地区F3代单粒传法群体间,以及F2代和F3单粒传法群体间都无偏分离现象；而在两地区F3代混合法群体间、F3代单粒传法与混合法群体间,以及F2代与F3代混合法群间都出现显著的差异及明显的偏分现象。并且发现F3代群体程氏指数法与分子标记法所得的分类结果,无论是在辽宁和广东两个生态地区间还是混合法及单粒传法两个后代处理方法上,总体水平都是一致的,而且Dj与稃毛、1～2穗节长、籽粒长宽比及程氏指数上都呈极显著的相关性。
2.在F6代群体中,不同地区及后代处理方法的群体同样呈连续性变异且正态分布,并且两地区单粒传法群体在分布上无差异(P=0.93)；混合法群体在分布上有微小差异但不显著(P=0.40)；系谱法群体呈极显著差异(P=0),且两群体明显偏向籼型,而广东地区群体比辽宁更为偏籼。并且,在混合法和单粒传法中,籼粳血缘Dj从偏籼或偏粳个体到中间血缘个体在频次分布上不呈连续性递增或递减,而是极大部分籼粳血缘集中于中间值(40%-60%),而偏籼或偏粳个体(小于40%或大于60%)骤然减少,该现象说明籼粳交育种存在综合亚种优势的潜力。
3.在亚种属性变化的研究中发现,1-2穗节长在形态学水平与亚种分类关系密切,可作为形态学分类的有效指标,而壳色在分子水平上与亚种遗传分化关系密切,可作为籼粳遗传分化的形态学辅助指标,而籽粒长宽比在形态学及分子水平上都与亚种分化有紧密的关系,可作为籼粳交后代亚种分化中的一个有效指标,来定向性的指示其分化过程中亚种的变化。另外,我们还发现籽粒长宽比在辽宁和广东地区间有显著的差异,说明该性状在环境响应上反应迅速,推测其可能还受表观遗传影响。
4.在研究籼粳亚种分化与经济性状的关系中,发现群体的千粒重与亚种属性有关,呈粳型>偏粳型>偏籼型>籼型的性状表现,且与千粒重有关的粒型及粒重基因区域血缘还与Dj呈显著的正相关；而结实率和单株产量却与生态适应性有关,因为其在相关性分析中和性状变化上呈现在辽宁地区粳型的性状表现较好,而在广东地区表现相反的现象；在F6代群体中,发现籼粳分化不仅与粒型及粒重基因有关,还与一些株型、穗型和抽穗期等性状基因有极显著相关。
上述结果表明,遗传重组作用不会引起群体的偏分离,环境效应主要是影响群体中不同籼粳血缘成分在不同生态条件下的稳定或纯合速率,是生态适应性的体现,其选择及淘汰作用较弱,影响稳定群体偏分离的作用并不显著。而人工选择才是造成籼粳交后代偏分离的主要原因,并伴随着自然选择和生态适应性的影响,在群体稳定后产生显著的偏分离现象。另外,籼粳分化还与一些重要农艺性状有紧密的关系,尤其是在粒型及粒重相关性状上,无论是在性状表现上,还是在相关性上都呈现紧密的关系。这可能是籼粳交育种虽综合了亚种间血缘,但却并未达到综合亚种优势性状效果的直接原因。
Indica-japonica hybridization is an important rice breeding method, aimed at taking advantage of favorable genes in different subspecies. To date, great achievements have been obtained in the wide study on classification, origin, and develpment of Asian cultivated rice and indica-japonica hybridization breeding. Based on above, this study uses F2, F3, and F6generations population from crossing of typical indica QiShanZhan and japonica Akihikari as the materials, which are grown in Liaoning (japonica area in Northeast China) and Guangdong(indica area in South China) province, respectively. Begining at F2generation, populations are harvested by single-seed descent (SSD), bulk harvesting (BM), and pedigree methods (PM). Using morphological marker (Cheng's Index) and molecular markers (InDels and ILPs), a comparative study has been made on the differences between morphological and genetic differentiation, and economic traits in different environments. In addition, this study also identifies the law of subspecies differentiation in filial generation of indica-japonica hybridization, and its relationships with economic traits under different environments; reveal the genetic basis on the effect of natural and artificial selection on subspecies differentiation; explores how to estimate indica-japonica adaptability of different environments, using the relationship between subspecies differentiation and economic traits; and finally, provides new insights into the process of subspecies differentiation to improve the efficiency of indica-japonica hybridization breeding, and inform to carry out" changing indica to japonica" project.
1. In early generations, subspecies characteristics of all population show the normal distribution and continuous variation, and no distortion segregation is found between two environments of F2population and F3SSD populations, and F2and F3SSD population. However, there are significant differences and obvious phenomenon of distortion segregation between two environments of F3BM population, SSD and BM population of F3generation, and F2and F3BM population. In addition, it is found that the results classified by Cheng's Index are in accordance with those classified by molecular markers, whether in different environments or seed harvesting methods. Furthermore, there are also significant correlations with distribution of japonica kinship percentage (Dj) found in glume pubescence (GP), length of the first and second panicle internodes (LPI), length-width ratio of grains (LWR), and Cheng's Index.
2. In F6generation, populations also show a normal distribution and continuous variation. According to comparing the population distribution of different environments, it is found that there's no difference in SSD populations (p=0.93), a minute but non-significant difference in BM populations (P=0.40), a significant difference in PM populations (P=0). And the whole PM populations are indica-deviated; moreover, PM population in Guangdong is more indica-deviated than that in Liaoning. Besides, in BM and SSD population, there's a discontinuous variation from indica-deviated or japobica-deviated individuals to neutral kinship individuals in frequency distribution; the most majority of individuals are neutral kinship (Dj=40%-60%), but few is indica-deviated or japonica-deviated (Dj>60%or<40%). This phenomenon suggests that there are potentials existing in indica-japonica hybridization breeding.
3. Drawing on the study on changes of subspecies characteristics, LPI is found to be closely related with morphological subspecies differentiation, probably as a effective index of morphological classification; but glume color (GP) has a close relationship with subspecies differentiation in molecular level, probably as an accessory index in morphology for subspecies genetic differentiation; additionally LWR is closely related with subspecies differentiation both in morphological and molecular level, possibly as an effective classification index to indicate the changes of subspecies in the process of differentiation. In addition, LWR also shows great differences between Liaoning and Guangdong provinces, demonstrated to has a fast response to environment, which implies that LWR is probably affected by epigenetics.
4. According to the study on the relationships between subspecies differentiation and economic traits,1000-grain weight (KW) is related to subspecies characteristics and shows japonica type>japonica-deviated type> indica-deviated type> indica type; and the kinship in the region of grain weight and shape genes with respect to KW is significantly and positively correlated with Dj; but seed setting rate (SSR) and grain yield per plant (GYP) are related with ecological adaptability, because correlation results show that their performance of japonica type is better than indica type in Liaoning but it is opposite in Guangdong; in F6generation, not only grain shape and weight genes are related to subspecies differentiation but some other genes with respect to plant type, panicle type, and heading date et al. are also significantly correlated with subspecies differentiation.
The results above demonstrate that genetic recombination could not cause distortion segregation; and environment could affect the speed of stabilization on different kinship individuals, which is the performance of ecological adaptability; and in the process of population differentiation, selection and elimination effect of environment are weak, which could not significantly affect population differentiation and cause distortion segregation. However, artificial selection is found as the main factor obviously causing distortion segregation in filial generation from indica-japonica hybridization, with the effect of nature selection and ecological adaptability. In addition, it is also found that there's close relationship between subspecies differentiation and some important agronomic traits. Especially in grain shape and weight, they show a close relationship whether in traits performance or correlation. This may be the primary cause resulting in why indica-japonica hybridization breeding didn't achieve the required effect of combining subspecies superiority but subspecies kinship.
1.在低世代群体中,各群体亚种属性都呈连续性变异且正态分布,并且两生态地区F2代群体间、两地区F3代单粒传法群体间,以及F2代和F3单粒传法群体间都无偏分离现象；而在两地区F3代混合法群体间、F3代单粒传法与混合法群体间,以及F2代与F3代混合法群间都出现显著的差异及明显的偏分现象。并且发现F3代群体程氏指数法与分子标记法所得的分类结果,无论是在辽宁和广东两个生态地区间还是混合法及单粒传法两个后代处理方法上,总体水平都是一致的,而且Dj与稃毛、1～2穗节长、籽粒长宽比及程氏指数上都呈极显著的相关性。
2.在F6代群体中,不同地区及后代处理方法的群体同样呈连续性变异且正态分布,并且两地区单粒传法群体在分布上无差异(P=0.93)；混合法群体在分布上有微小差异但不显著(P=0.40)；系谱法群体呈极显著差异(P=0),且两群体明显偏向籼型,而广东地区群体比辽宁更为偏籼。并且,在混合法和单粒传法中,籼粳血缘Dj从偏籼或偏粳个体到中间血缘个体在频次分布上不呈连续性递增或递减,而是极大部分籼粳血缘集中于中间值(40%-60%),而偏籼或偏粳个体(小于40%或大于60%)骤然减少,该现象说明籼粳交育种存在综合亚种优势的潜力。
3.在亚种属性变化的研究中发现,1-2穗节长在形态学水平与亚种分类关系密切,可作为形态学分类的有效指标,而壳色在分子水平上与亚种遗传分化关系密切,可作为籼粳遗传分化的形态学辅助指标,而籽粒长宽比在形态学及分子水平上都与亚种分化有紧密的关系,可作为籼粳交后代亚种分化中的一个有效指标,来定向性的指示其分化过程中亚种的变化。另外,我们还发现籽粒长宽比在辽宁和广东地区间有显著的差异,说明该性状在环境响应上反应迅速,推测其可能还受表观遗传影响。
4.在研究籼粳亚种分化与经济性状的关系中,发现群体的千粒重与亚种属性有关,呈粳型>偏粳型>偏籼型>籼型的性状表现,且与千粒重有关的粒型及粒重基因区域血缘还与Dj呈显著的正相关；而结实率和单株产量却与生态适应性有关,因为其在相关性分析中和性状变化上呈现在辽宁地区粳型的性状表现较好,而在广东地区表现相反的现象；在F6代群体中,发现籼粳分化不仅与粒型及粒重基因有关,还与一些株型、穗型和抽穗期等性状基因有极显著相关。
上述结果表明,遗传重组作用不会引起群体的偏分离,环境效应主要是影响群体中不同籼粳血缘成分在不同生态条件下的稳定或纯合速率,是生态适应性的体现,其选择及淘汰作用较弱,影响稳定群体偏分离的作用并不显著。而人工选择才是造成籼粳交后代偏分离的主要原因,并伴随着自然选择和生态适应性的影响,在群体稳定后产生显著的偏分离现象。另外,籼粳分化还与一些重要农艺性状有紧密的关系,尤其是在粒型及粒重相关性状上,无论是在性状表现上,还是在相关性上都呈现紧密的关系。这可能是籼粳交育种虽综合了亚种间血缘,但却并未达到综合亚种优势性状效果的直接原因。
Indica-japonica hybridization is an important rice breeding method, aimed at taking advantage of favorable genes in different subspecies. To date, great achievements have been obtained in the wide study on classification, origin, and develpment of Asian cultivated rice and indica-japonica hybridization breeding. Based on above, this study uses F2, F3, and F6generations population from crossing of typical indica QiShanZhan and japonica Akihikari as the materials, which are grown in Liaoning (japonica area in Northeast China) and Guangdong(indica area in South China) province, respectively. Begining at F2generation, populations are harvested by single-seed descent (SSD), bulk harvesting (BM), and pedigree methods (PM). Using morphological marker (Cheng's Index) and molecular markers (InDels and ILPs), a comparative study has been made on the differences between morphological and genetic differentiation, and economic traits in different environments. In addition, this study also identifies the law of subspecies differentiation in filial generation of indica-japonica hybridization, and its relationships with economic traits under different environments; reveal the genetic basis on the effect of natural and artificial selection on subspecies differentiation; explores how to estimate indica-japonica adaptability of different environments, using the relationship between subspecies differentiation and economic traits; and finally, provides new insights into the process of subspecies differentiation to improve the efficiency of indica-japonica hybridization breeding, and inform to carry out" changing indica to japonica" project.
1. In early generations, subspecies characteristics of all population show the normal distribution and continuous variation, and no distortion segregation is found between two environments of F2population and F3SSD populations, and F2and F3SSD population. However, there are significant differences and obvious phenomenon of distortion segregation between two environments of F3BM population, SSD and BM population of F3generation, and F2and F3BM population. In addition, it is found that the results classified by Cheng's Index are in accordance with those classified by molecular markers, whether in different environments or seed harvesting methods. Furthermore, there are also significant correlations with distribution of japonica kinship percentage (Dj) found in glume pubescence (GP), length of the first and second panicle internodes (LPI), length-width ratio of grains (LWR), and Cheng's Index.
2. In F6generation, populations also show a normal distribution and continuous variation. According to comparing the population distribution of different environments, it is found that there's no difference in SSD populations (p=0.93), a minute but non-significant difference in BM populations (P=0.40), a significant difference in PM populations (P=0). And the whole PM populations are indica-deviated; moreover, PM population in Guangdong is more indica-deviated than that in Liaoning. Besides, in BM and SSD population, there's a discontinuous variation from indica-deviated or japobica-deviated individuals to neutral kinship individuals in frequency distribution; the most majority of individuals are neutral kinship (Dj=40%-60%), but few is indica-deviated or japonica-deviated (Dj>60%or<40%). This phenomenon suggests that there are potentials existing in indica-japonica hybridization breeding.
3. Drawing on the study on changes of subspecies characteristics, LPI is found to be closely related with morphological subspecies differentiation, probably as a effective index of morphological classification; but glume color (GP) has a close relationship with subspecies differentiation in molecular level, probably as an accessory index in morphology for subspecies genetic differentiation; additionally LWR is closely related with subspecies differentiation both in morphological and molecular level, possibly as an effective classification index to indicate the changes of subspecies in the process of differentiation. In addition, LWR also shows great differences between Liaoning and Guangdong provinces, demonstrated to has a fast response to environment, which implies that LWR is probably affected by epigenetics.
4. According to the study on the relationships between subspecies differentiation and economic traits,1000-grain weight (KW) is related to subspecies characteristics and shows japonica type>japonica-deviated type> indica-deviated type> indica type; and the kinship in the region of grain weight and shape genes with respect to KW is significantly and positively correlated with Dj; but seed setting rate (SSR) and grain yield per plant (GYP) are related with ecological adaptability, because correlation results show that their performance of japonica type is better than indica type in Liaoning but it is opposite in Guangdong; in F6generation, not only grain shape and weight genes are related to subspecies differentiation but some other genes with respect to plant type, panicle type, and heading date et al. are also significantly correlated with subspecies differentiation.
The results above demonstrate that genetic recombination could not cause distortion segregation; and environment could affect the speed of stabilization on different kinship individuals, which is the performance of ecological adaptability; and in the process of population differentiation, selection and elimination effect of environment are weak, which could not significantly affect population differentiation and cause distortion segregation. However, artificial selection is found as the main factor obviously causing distortion segregation in filial generation from indica-japonica hybridization, with the effect of nature selection and ecological adaptability. In addition, it is also found that there's close relationship between subspecies differentiation and some important agronomic traits. Especially in grain shape and weight, they show a close relationship whether in traits performance or correlation. This may be the primary cause resulting in why indica-japonica hybridization breeding didn't achieve the required effect of combining subspecies superiority but subspecies kinship.
引文
1.包灵丰,林刚,赵德明,李云武,杨丛金,江青山,贺兵.2003.运用程氏指数法对恢复系宜恢3551籼粳属性的鉴别.杂交水稻,18(3)：53-54
2.鲍根良,小林麻子,富田桂,金庆生,张小明,严文潮,叶胜海.2005.粳稻近缘品种的SSR分析.中国水稻科学,19(1)：21-24
3.才宏伟,王象坤,程侃声,张尧忠.1992.亚洲稻(Oryza Sativa L.)分类的酯酶同工酶研究——兼论水稻酯酶同工酶基因表达的时空性.西南农业学报(4)：19-24
4.蔡健,兰伟.2005.利用AFLP分子标记预测水稻杂种优势.作物学报,31(4)：526-528
5.陈芬,陈雨,曲延英,潘大建,杨庆文,井赵斌,刘维,范芝兰,陈建酉,李晨.2009.粤北普通野生稻籼粳分化的SSR分析.基因组学与应用生物学,28(1)：51-56
6.陈亮,梁春阳,孙传清,金德敏,姜廷波,王斌,王象坤.2002.AFLP和RFLP标记检测水稻亲本遗传多样性比较研究.中国农业科学,35(6)：589-595
7.陈书强,徐正进,陈温福,徐海,刘宏光,朱春杰,王韵,王嘉宇.2007.籼粳稻杂交后代维管束性状与穗部性状的关系.华北农学报(5)：8-14
8.陈温福,潘文博,徐正进.2006.我国粳稻生产现状及发展趋势.沈阳农业大学学报,37(6)：801-805
9.陈温福,徐正进,张龙步.2003.水稻超高产育种生理基础.沈阳：辽宁科学技术出版社,146-155
10.陈文炳.1999.亚洲栽培稻起源分化的遗传学研究.上海农业学报,15(3)：42-48
11.陈雨,潘大建,曲延英,范芝兰,陈建酉,李晨.2007.水稻籼粳分化研究进展.广东农业科学(12)：3-7
12.陈跃进,丁效华,杨长寿,张桂权,卢永根.2002.水稻粳型亲籼系籼粳型属性的程氏指数鉴定.28(4)：284-286
13.陈跃进,张桂权,卢永根.2007.利用微卫星分子标记法研究水稻亲缘关系.湖南农业大学学报,33(3)：258-261
14.程侃声.1993.亚洲栽培稻籼粳亚种的鉴别.昆明：云南科技出版社,56-69
15.程玲,王鹤潼,荣俊珍,徐正进.2012.生态条件对籼粳稻杂交F2代亚种特性分化与经济性状的影响.种子,31(3)：1-6
16.程式华,李建.2007.现代中国水稻.北京：金盾出版社,52-55
17.程式华,廖西元,闵绍楷.1998.中国超级稻研究：背景、目标和有关问题的思考.中国稻米(1)：3-5
18.程式华,毛传澡,占小登,斯华敏,孙宗修.2001.籼粳交DH群体和RIL群体的构建及籼粳 分化.中国水稻科学,15(4)：257-260
19.程新奇,严钦泉,周清明,易哪.2006.籼、粳稻及其杂种谷粒苯酚染色反应研究.杂交水稻,21(3)：72-74
20.崔莹莹,郭安平,王晓玲,孔华,郭运玲,贺立卡.2009.RAPD和SSR标记检测海南普通野生稻籼粳分化的比较研究.热带作物学报,30(6)：773-780
21.戴小军,欧立军,李文嘉,刘平,陈良碧.2007.水稻籼型,粳型特异性分子标记的研究和应用.湖南农业大学学报,33：8
22.邓华凤,何强,舒服,张武汉,杨飞,荆彦辉,东丽,谢辉.2006.中国杂交粳稻研究现状与对策.杂交水稻,21(1)：1-6
23.丁效华,陈跃进,杨长寿,张泽民,卢永根,张桂权.2003.水稻粳型亲籼系粳型性的判别.中国水稻科学,9(1)：58-61
24.丁颖.1957.中国栽培稻种的起源及其演变.农业学报,8(3)：243-260
25.丁颖.1983.中国栽培稻种的分类.丁颖稻作论文选集.北京：中国农业出版社,74-93
26.段世华,毛加宁,朱英国.2002.用微卫星DNA标记对我国杂交水稻主要恢复系遗传差异的检测分析.遗传学报,29(3)：250-254
27.段中岗,梁程邺.2005.改良聚丙稀酰胺凝胶电泳法测定籼粳分化的同工酶带.兰州大学学报(自然科学版),41(4)：30-33
28.樊叶杨,庄杰云,吴建利,孙宝龙,郑康乐.2000.应用微卫星标记鉴别水稻籼粳亚种.遗传,22(6)：392-394
29.方宣钧,黄育民,陈启锋.1999.若干水稻品种(组合)的等位酶和RAPD遗传分析.中国农业科学,32(2)：1-8
30.冯芳君,罗利军,李荧,周立国,徐小艳,吴金红,陈宏伟,陈亮,梅捍卫.2005.水稻InDel和SSR标记多态性的比较分析.分子植物育种,3(5)：725-730
31.高立志.1999.博士后出站报告.北京：中国农业科学院,8-19
32.顾铭洪.2010.水稻高产育种中一些问题的讨论.作物学报,36(9)：1431-1439
33.郭艳华,徐海,朱春杰,徐正进.2008.水稻籼粳交后代亚种特性的变化及其与维管束性状的关系.种子,27(3)：1-4
34.韩双艳,郭勇.2001AFLP在分子生物学研究中的应用.生物技术通报(2)：22-24
35.何光华,郑家奎,李耘,杨正林.1993.不同类型水稻产量组分研究.西南农业大学学报,15(5)：438-440
36.何华勤,贾小丽,梁义元,沈荔花,宋碧清,郭玉春,梁康迳,林文雄.2004.RAPD和ISSR标记对水稻化感种质资源遗传多态性的分析.遗传学报,31(9)：888-894
37.何予卿,张宇,孙梅,何光存,王松文,朱英国.2001.利用ISSR分子标记研究栽培稻和野生稻亲缘关系.农业生物技术学报,9(2)：123-127
38.贺学勤,刘庆昌,翟红,王玉萍.2005.用RAPD,ISSR和AFLP标记分析系谱关系明确的甘薯品种的亲缘关系.作物学报,31(10)：1300-1304
39.华明娟,马厚勋,牛永红,谢正祥.2008.KLOTHO的3个SNP位点分布与几种疾病相关性的研究.中国现代医学杂志,18(9)：1174-1178
40.黄燕红,孙新立,王象坤.2005.中国栽培稻遗传多样性中心和起源研究.植物遗传资源学报,6(2)：125-129
41.贾继增.1996.分子标记种质资源鉴定和分子标记育种.中国农业科学,29(4)：1-10
42.姜健,李金泉,徐正进,张龙步,金成海.2001.水稻籼粳交主要性状遗传规律的研究.吉林农业科学,26(2)：2-6
43.姜树坤,钟鸣,徐正进,张丽,马慧,刘少霞.2006.基于RAPD标记进行水稻籼粳分类研究.沈阳农业大学学报,37(4)：639-641
44.李海明,胡瑞法.2008.国外稻种资源对我国水稻生产的贡献.浙江大学学报(农业与生命科学版),34(1)：65-72
45.李红宇,侯昱铭,陈英华,徐正进,陈温福,赵明辉,马殿荣,徐海,王嘉宇.2009.用SSR标记评估东北三省水稻推广品种的遗传多样性.中国水稻科学,23(4)：383-390
46.李金泉,姜健,徐正进,张龙步,陈温福.2000.籼粳稻杂交分类性状遗传研究初报.沈阳农业大学学报,31(3)：233-237
47.李进波,牟同敏,方宣钧.2002.12个水稻光温敏核不育系的ISSR标记鉴定及遗传分析.中国农学通报,18(1)：6-9
48.李任华,徐才国,何予卿,袁隆平,王象坤.1998.水稻亲本遗传分化程度与籼粳杂种优势的关系.作物学报,24(5)：564-576
49.李旭毅,池忠志,姜心禄,郑家国.2012.成都平原两熟地区籼粳稻品种籽粒灌浆特性.中国农业科学,45(16)：3256-3264
50.李余良,吉田晋弥.2000.RAPD标记在日本兵库县20个酒米品种类群划分中的应用.华南农业大学学报,21(4)：4-6
51.李云海,肖晗,张春庆,胡国成,于永红,贾继增,孙宗修.1999.用微卫星DNA标记检测中国主要杂交水稻亲本的遗传差异.植物学报,41(10)：1061-1066
52.林世成,闵绍楷.1991.中国水稻品种及其系谱.上海：上海科技出版社,106-138
53.刘万友,杨振玉.1991a.应用程氏指数法进行籼梗交F1分类.沈阻农业大学学报,22(增刊)：82-86
54.刘万友,杨振玉.1991b.程氏指数法分类性状的遗传分析.沈阳农业大学学报,22(增刊)：87-91
55.刘炜,李自超,史延丽,王坚,马洪文,张洪亮.2006.利用SSR标记进行粳稻品种的遗传多样性研究.西南农业学报,18(5)：509-513
56.刘之熙,刘云开,詹庆才.2008.水稻孕穗期耐冷基因的CAPs标记辅助选择.湖南农业大学学 报：自然科学版,34(2)：117-131
57.龙雯虹,许明辉.2002.籼稻和粳稻品种在RAPD上的遗传差异.云南农业大学学报,17(3)：245-247
58.卢泳全,汪旭升,黄伟素,肖天霞,郑燕,吴为人.2006.基于水稻内含子长度多态性开发禾本科扩增共有序列遗传标记.中国农业科学,39(3)：433-439
59.陆永法,马荣荣,王晓燕,李信年,周华成,章志远,华国来.2007.甬优系列杂交水稻SSR标记指纹图谱和籼粳属性.中国水稻科学,21(4)：443-446
60.毛艇,徐海,郭艳华,朱春杰,陈凯,王嘉宇,徐正进.2009.利用SSR分子标记进行水稻籼粳分类体系的初步构建.华北农学报,24(1)：119-124
61.梅捍卫,黎志康,王一平,余新桥,钟代彬,罗利军,应存山.1997"Lemont/特青”重组自交系的六性状籼梗分类的研究.中国水稻科学,11(14)：193-197
62.欧立军,陈觉梁,黄光文,陈良碧.2007.三系不育系水稻叶绿体DNA遗传多态性研究.湖南农业大学学报：自然科学版(S1)
63.彭俊华.1991.水稻产量的基因型×环境互作分析及生态类型区的划分.四川农业大学学报,9(3)：327-333
64.彭俊华,李有春.1990.水稻籼、粳两亚种产量构成特点的剖析与比较.四川农业大学学报,8(3)：162-168
65.彭锁堂,王海岗,魏兴华,吕建珍,张晓丽,袁筱萍,杨武德.2008.我国三系杂交稻主要不育系的微卫星标记多样性和遗传结构分析.中国水稻科学,22(4)：365-369
66.齐永文,张冬玲,张洪亮,王美兴,孙俊立,廖登群,魏兴华,裘宗恩,汤圣祥,曹永生.2006.中国水稻选育品种遗传多样性及其近50年变化趋势.科学通报,51(6)：693-699
67.钱惠荣,沈波,林鸿宣,陆军,庄杰云,郑康乐.1994.应用水稻籼粳特异性RFLP标记及广亲和品种亲缘关系分析.中国水稻科学,8(2)：65-71
68.秦君,李英慧,刘章雄,关荣霞,张孟臣,常汝镇,李广敏,马峙英,邱丽娟.2008.用SSR分子标记解析大豆品种绥农14与系谱亲本间的遗传关系.中国农业科学,41(12)：3999-4007
69.矢野昌裕.1992.水稻RFLP研究及其在遗传育种上的应用.杂交水稻,46(2)：47-48
70.苏泽胜,李泽福.2007.安徽省超级稻研究与应用现状及展望.沈阳农业大学学报,38(5)：739-743
71.隋炯明,梁国华,李欣,吴书俊,严松,赵祥强,张正球,顾铭洪.2006.籼稻多蘖矮半矮秆基因的遗传分析和基因定位.作物学报,32(6)：845-850
72.孙传清,姜廷波,陈亮.2000.水稻杂种优势与遗传分化关系的研究.作物学报,26(6)：641-649
73.孙传清,王象坤,吉村淳,土井一行,岩田伸夫.1997.普通野生稻和亚洲栽培稻核基因组的RFLP分析.中国农业科学,30(4)：37-44
74.孙新立,才宏伟,王象坤.1996.水稻同工酶聚丙烯酰胺凝胶电泳方法探索.中国水稻科学,10 (1)：43-50
75.孙新立,才宏伟,王象坤.1997.东亚、南亚籼稻同工酶基因的异同分析.中国农业科学,30(5)：50-55
76.孙宗修,程式华.1994.杂交水稻育种从三系、两系到一系.北京：中国农业科技出版社,220-250
77.汤陵华,孙加祥,宇田津徹朗,佐藤洋一朗.2003.太湖地区水稻地方品种籼粳分类方法的比较.江苏农业学报,19(3)：139-144
78.汤圣祥,江云珠,魏兴华,李自超,余汉勇.2002.中国栽培稻同工酶的遗传多样性.作物学报,28(2)：203-207
79.汤圣祥,闵绍楷,佐藤洋一郎.1993.中国粳稻起源的探讨.中国水稻科学,7(3)：129-136
80.王斌.2000.AFLP的原理及其在植物分子生物学研究中的应用.北京：科学出版社
81.王才林,宇田津彻朗,藤原宏志,汤陵华,邹江石.1997.栽培稻机动细胞硅酸体的形态特征及其在籼,粳亚种间的差异.江苏农业学报,13(3)：129-138
82.王才林,朱镇,张亚东,赵凌.2008.江苏省粳稻品质改良的成就、问题与对策.江苏农业学报,24(2)：199-203
83.王春明,安井秀,吉村醇,苏昌潮,翟虎渠,万建民.2003.水稻叶蝉抗性基因回交转育和CAPS标记辅助选择.中国农业科学,36(3)：237-241
84.王家祥,陈友桃,黄娟,乔卫华,张万霞,杨庆文.2009.中国普通野生稻(Oryza rufipogon Griff.)原生保护与未保护居群的遗传多样性比较.作物学报,35(8)：1474-1482
85.王建平,孙传清,李自超,李任华,王象坤.1998.两套水稻DH群体的形态指数和同工酶的籼粳分类研究.中国农业科学,31(4)：8-15
86.王胜军,陆作楣.2006.中国杂交籼稻遗传多样性演变及其分析.江苏农业学报,22(3)：192
87.王松文,刘霞,王勇,徐才国,施利利,张欣,丁得亮2006.RFLP揭示的籼粳基因组多态性.中国农业科学,39(5)：1038-1043
88.王象坤.1994.中国普通野生稻(Oryza rufipogon Griff.)研究中几个重要问题的初步探讨.农业考古(1)：48-51
89.王象坤,程侃声,黄迺威,罗军,卢义宣,刘光荣.1987.亚洲栽培稻起源、演化中两个重要稻种类型的研究.遗传学报,14(4)：262-270
90.王象坤,李任华,孙传清,李自超,才宏伟,孙新立.1997.亚洲栽培稻的亚种及亚种间杂交稻的认定与分类.科学通报,42(24)：2596-2603
91.王象坤,孙传清,才宏伟,张居正.1998.中国稻作起源与演化.科学通报,43(22)：2354-2363
92.王艳红,王辉,高立志.2003.普通野生稻(Oryza rufipogon Griff.)的SSR遗传多样性研究.西北植物学报,23(10)：1750-1754
93.王韵,徐正进,陈温福,赵明辉,方萍.2007.辽宁水稻直立穗型基因位点SSR标记变异分析. 沈阳农业大学学报,38(3)：395-397
94.王振山,陈皓,李小兵,梁承志,王象坤,朱立煌.1998.一个AA基因组特异的串联重复序列的克隆及其在中国普通野生稻和栽培稻中的分化特征.植物学报,40(10)：906-914
95.熊振民,程式华,曹立勇.1989.水稻籼粳杂种优势利用研究的现状与展望.水稻文摘(10)：2-10
96.徐正进,陈温福,张龙步,彭应财,张俊国.1996.水稻穗颈维管束性状的类型间差异及其遗传的研究.作物学报,22(2)：167-172
97.徐正进,李金泉,黄瑞冬,姜健,陈温福,张龙步.2003a.籼粳稻杂交后代亚种特性表现与分类研究.中国农业科学,36(12)：1571-1575
98.徐正进,李金泉,姜健,荆彦辉,张文忠,陈温福,张龙步.2003b.籼粳稻杂交育成品种的亚种特征性状及其与经济性状的关系.作物学报,29(5)：735-739
99.许旭明,张受刚,梁康迳,卓伟,马彬林,杨腾帮.2009.水稻籼粳杂交衍生系创新效果评价与利用.福建农林大学学报,38(2)：113-118
100.许旭明，张受刚,卓伟,杨藤帮,范祖军.1997.水稻广亲和恢复系GK729的表现及其利用.作物学报,15(1)：17-20
101.杨守仁,沈锡英,顾慰连,曹淡君.1962.籼粳稻杂交育种研究.作物学报,1(2)：97-102
102.杨守仁,沈锡英,顾慰连.1973.籼粳稻杂交育种研究.遗传学通讯,(2)：34-38.
103.杨守仁.1987.三十六年籼粳杂交稻育种的研究及发展.沈阳农业大学学报,18(3)：3-9
104.杨守仁,张龙步,陈温福,徐正进,王进民.1996.水稻超高产育种的理论和方法.作物学报,22(3)：295-304
105.杨守仁,赵纪书.1959.籼粳稻杂交问题之研究.农业学报,10(4)：256-268
106.杨振玉,陈秋柏,陈荣芳,苏正基,贾宝清,佟景兴,王健群.1981.水稻粳型恢复系C57的选育.作物学报,7(3)：153-156
107.杨振玉.1998.北方杂交粳稻发展的思考与展望.作物学报,24(6)：840-846
108.杨忠义,曹永生,苏艳,刘晓利,李华慧,卢义宣.2007.中国栽培稻的籼粳分化机理再论.云南农业学报,20(3)：321—326
109.应杰政,施勇烽,庄杰云,薛庆中.2007.用微卫星标记评估中国水稻主栽品种的遗传多样性.中国农业科学,40(4)：649-654
110.于舰,庞灏,王保捷.2008.人类酪氨酸羟化酶基因SNP多态性与精神疾病的相关性.法医学杂志,24(5)：333-335
111.袁隆平.1973.利用野败选育三系的进展.湖南农业科学,(4)：l-5.
112.袁隆平.1987.杂交水稻的育种战略设想.杂交水稻,1(1)：3
113.袁隆平.2002.杂交水稻学.北京：中国农业出版社,192-204
114.袁隆平,武小金,颜应成,罗孝和.1997.水稻广谱广亲和系的选育策略.中国农业科学,30(4)：1-8
115.张海英,王永健,许勇,张峰,康国斌.2001.黄瓜育种中“血缘”遗传关系分析研究.华北农学报,16(2)：20-26
116.张汉尧,刘小珍,杨宇明.2006.RFLP在植物遗传育种研究中的应用.西南林学院学报,26(1)：74-79
117.张建勇,袁佐清,李仕贵.2005.微卫星标记分析籼粳亚种间的遗传多样性.山东理工大学学报：自然科学版,19(2)：22-27
118.张培江,付强,占新春,吴爽.2007.超高产杂交粳稻育种研究与实践.中国农学通报,23(10)：123-130
119.张受刚,许旭明.2006.粳型亲籼恢复系的选育与利用.福建稻麦科技,24(1)：3-5
120.张尧忠,徐宁生.1998.酯酶酶带分类法及稻种籼粳分类体系的讨论.西南农业学报,11(3)：88-93
121.章志宏,陈明明,唐俊,胡中立.2002.水稻穗颈维管束和穗部性状的遗传分析.作物学报,28(1)：86-89
122.赵安常,芮重庆.1982.籼稻数量性状配合力的研究.作物学报,8(2)：113-117
123.赵伟,夏寒冰,章淑杰,蔡星星,卢宝荣.2008.籼-粳稻特异插入/缺失分子标记揭示的稻属植物遗传分化.复旦学报：自然科学版,47(3)：281-287
124.赵向前.2007.水稻内含子长度多态性分子标记的开发和应用.杭州：浙江大学
125.赵勇,杨凯,Cheema, A.A.,翁跃进.2002.利用水稻功能基因SSR标记鉴定水稻种质资源.中国农业科学,35(4)：349-353
126.郑景生,陈良兵,符文英,李义珍.2004.野生稻不同基因组的SSR多样性分析.分子植物育种,2(1)：25-33
127.中国农业科学院.1986.中国稻作学.北京：农业出版社,309-316
128.周汇,Glaszmann, J.C.,程侃声,施晓群.1988.栽培稻分类方法的比较.中国水稻科学,2(1)：1-7
129.周建民,程祝宽,封功能,龚志云,顾铭洪.2004.串联重复序列在籼粳亚种间的差异及其与栽培稻遗传分化关系的研究.扬州大学学报(农业与生命科学版),25(2)：1-4
130.周开达,汪旭东,李仕贵,李平,黎汉云,黄国寿,刘太清,沈茂松.1997.亚种间重穗型杂交稻研究.中国农业科学,30(5)：91-93
131.周拾禄.1948.中国是稻之起源地.中国稻作,5(5)：53-54
132.朱春杰,徐海,郭艳华,王嘉宇,刘宏光,徐正进.2007.籼粳交重组自交系亚种属性判别及维管束性状的变异.中国水稻科学,21(6)：619-624
133.朱英国,梅启明,余金洪,桂东湖.1982.水稻品种酯酶同工酶的初步研究.作物学报,8(2)：73-80
134.朱作峰,孙传清,付永彩,张培江,王象坤.2002.用SSR标记比较亚洲栽培稻与普通野生稻的遗传多样性.中国农业科学,35(12)：1437-1441
135.朱作峰,孙传清,李自超,王象坤.2001.用SSR标记对水稻品种的分类研究.农业生物技术学报,9(1)：58-61
136.庄杰云,钱惠荣,林鸿宣,陆军,程式华,应存山,罗利军,朱旭东,董凤高,闵绍楷,孙宗修,郑康乐.1995.应用RFLP标记研究亚洲栽培稻的起源与分化.中国水稻科学,9(3)：135-140
137.卓伟.2008.水稻籼粳杂交育种系谱ILP标记及不同籼粳分化类型的光合特性研究.福建农林大学
138.邹江石,吕川根.2005.水稻超高产育种的实践与思考.作物学报,31(2)：254-258
140.Akopyanz, N., Bukanov, N.O., Westblom, T.U., Berg, D.E.1992. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori. Nucleic Acids Research,20 (23):6221-6225
141.Almanza-Pinzon, M.I., Khairallah, M., Fox, P.N., Warburton, M.L.2003. Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica,130 (1):77-86
142.Arai-Kichise, Y., Shiwa, Y., Nagasaki, H., Ebana, K., Yoshikawa, H., Yano, M., Wakasa, K.2011. Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing. Plant and cell physiology,52 (2):274-282
143.Bai, X.F., Luo, L.j., Yan, W.H., Kovi, M.R., Zhan, W., Xing, Y.Z.2010. Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. BMC genetics,11 (1):16
144.Bao, J.S., Corke, H., Sun, M.2006. Analysis of genetic diversity and relationships in waxy rice (Oryza sativa L.) using AFLP and ISSR markers. Genetic Resources and Crop Evolution,53 (2): 323-330
145.Barth, S., Melchinger, A., Lubberstedt, T.2002. Genetic diversity in Arabidopsis thaliana L. Heynh. investigated by cleaved amplified polymorphic sequence (CAPS) and inter-simple sequence repeat (ISSR) markers. Molecular Ecology,11 (3):495-505
146.Baumbusch, L.O., Sundal, I.K., Hughes, D.W., Galau, GA., Jakobsen, K.S.2001. Efficient protocols for CAPS-based mapping inArabidopsis. Plant Molecular Biology Reporter,19 (2): 137-149
147.Belaj, A., Satovic, Z., Cipriani, G., Baldoni, L., Testolin, R., Rallo, L., Trujillo,1.2003. Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. TAG Theoretical and Applied Genetics, 107 (4):736-744
148.Bornet, B., Branchard, M.2001. Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Molecular Biology Reporter,19 (3): 209-215
149.Cai, X.X., Liu, J., Qiu, Y.Q., Zhao, W., Song, Z.P., Lu, B.R.2007. Differentiation of indica-japonica rice revealed by insertion/deletion (InDel) fragments obtained from the comparative genomic study of DNA sequences between 93-11 (indica) and Nipponbare (japonica). Frontiers of Biology in China,2:291-296
150.Chang, T.T.1976. The origin, evolution, cultivation, dissemination and diversification of Asian and African rices. Euphytica,25:435-441
151.Chang, T.T., Oka, H.I.1976. Genetic variousness in the climatic adaption of rice cultivars. Proceedings of the symposium on climate and rice. Los Banˇos, Philippines:International Rice Research Institute,87-111
152.Chen, W.F., Xu, Z.J., Zhang, L.B.1995. Comparative study of stomata density and gas diffusion resistance in leaves of various types of rice. Korean Journal of Crop Science,40 (2):125-132
153.Cheng, K.S.1985. A statistical evaluation of the classification of rice cultivars into hsien and keng subspecies. Rice genetics newsletter,2:46-48
154.Cheng, K.S., Zhou, J.W., Lu, Y.X., Luo, J., Huang, N.W., Liu, G.R., Wang, X.K.1984. Studies on the indigenous in Yunnan and their utilization Ⅱ-A revised classification of Asian culture rice. Acta Agronomica Sinica,4:271
155.Chin, J.H., Kim, J.H., Kwon, S.W., Cho, Y.I., Koh, H.J., Piao, Z.2003. Identification of subspecies-specific RAPD markers in rice. Korean Journal of Breeding,35:
156.Cox, T.S., Kiang, Y.T., Gorman, M.B., Rodgers, D.M.1985. Relationship between coefficient of parentage and genetic similarity indices in the soybean. Crop Science,25 (3):529-532
157.Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T, Shimatani, Z., Yano, M., Yoshimura, A. 2004. Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-deviated gene expression independently of Hdl. Genes & development,18 (8): 926-936. doi:10.1101/gad.1189604
158.Dreisigacker, S., Zhang, P., Warburton, M., Van Ginkel, M., Hoisington, D., Bohn, M., Melchinger, A.2004. SSR and pedigree analyses of genetic diversity among CIMMYT wheat lines targeted to different megaenvironments. Crop Science,44 (2):381-388
159.Fan, C.C., Xing, Y.Z., Mao, H.L., Lu, T.T, Han, B., Xu, C.G, Li, X.H., Zhang, Q.F.2006. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics,112 (6):1164-1171. doi:10.1007/s00122-006-0218-1
160.Fan, Y.Y., Zhuang, J.Y., Wu, J.L., Sun, B.L., Zheng, K.L.2000. SSLP based Identification of Subspecies in Rice (Oryza sativa L.). Hereditas,Beijing,6:392-394
161.Feltus, F.A., Wan, J., Schulze, S.R., Estill, J.C., Jiang, N., Paterson, A.H.2004. An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome research,14 (9):1812-1819
162.Fu, Y.B., Peterson, G.W., Yu, J.K., Gao, L.F., Jia, J.Z., Richards, K.W.2006. Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers. TAG Theoretical and Applied Genetics,112 (7):1239-1247
163.Fuentes, J.L., Escobar, F., Alvarez, A., Gallego, G., Duque, M.C., Ferrer, M., Deus, J.E., Tohme, J.M.1999. Analyses of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers. Euphytica,109 (2):107-115
164.Fukuvama, T.2001. Variation of the vascular bundle system in Asian wild rice,Oryza rufipogon and its relationship to rachis branch number and growth habit. Euphytica,117:13-18
165.Fukuvama, T., Takavama, T.1995. Variations of the vascular bundle system in Asian rice cultivars. Euphytica,86:227-231
166.Gao, L.Z., Hong, S.G.D.-y.2000. Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff, in China. Theoretical and Applied Genetics,101 (3):494-502
167.Garcia, E., Jamilena, M., Alvarez, J., Arnedo, T., Oliver, J., Lozano, R.1998. Genetic relationships among melon breeding lines revealed by RAPD markers and agronomic traits. TAG Theoretical and Applied Genetics,96 (6):878-885
168.Glaszmann, J.C.1987. Isozymes and classification of Asian rice varieties, heoretical and Applied Genetics,74(1):21-30
169.Glaszmann, J.C., Reyes, B.G., Khush, G.S.1988. Electrophoretic variation of isozymes in plumules of rice Oryza sativa L-a key to the identification of 76 alleles at 24 loci. IRRI Research Paper Series, (134):1-14
170.Grodzicker, T., Williams, J., Sharp, P., Sambrook, J.1974. Physical mapping of temperature-sensitive mutations of adenoviruses. Cold Spring Harbor symposia on quantitative biology. Cold Spring Harbor Laboratory Press,439-446
171.Han, B., Xue, Y.B.2003. Genome-wide intraspecific DNA-sequence variation in rice. Current Opinion in Plant Biology, (6):134-138
172.Huang, X.H., Kurata, N., Wei, X.H., Wang, Z.X., Wang, A.H., Zhao, Q., Zhao, Y., Liu, K.Y., Lu, H.Y., Li, W.J., Guo, Y.L., Lu, Y.Q., Zhou, C.C., Fan, D.L., Weng, Q.J., Zhu, C.R., Huang, T., Zhang, L., Wang, Y.C., Feng, L., Furuumi, H., Kubo, T., Miyabayashi, T., Yuan, X.P., Xu, Q., Dong, G.J., Zhan, Q.L., Li, C.Y., Fujiyama, A., Toyoda, A., Lu, T.T., Feng, Q., Qian, Q., Li, J.Y., Han, B.2012. A map of rice genome variation reveals the origin of cultivated rice. Nature,490 (7421):497-501. doi:10.1038/nature11532
173.Huang, X.Z., Qian, Q., Liu, Z.B., Sun, H.Y., He, S.Y., Luo, D., Xia, G.M., Chu, C.C., Li, J.Y., Fu, X.D.2009. Natural variation at the DEP1 locus enhances grain yield in rice. Nature genetics,41 (4): 494-497
174.Jena, K., Mackill, D.2008. Molecular markers and their use in marker-assisted selection in rice. Crop Science,48 (4):1266-1276
175.Jiang, S.K., Zhong, M., Xu, Z.J., Zhang, L., Ma, H., Liu, S.X.2006. Classification of Rice Cultivars with RAPD Molecular Markers. Journal of Shenyang Agricultural University,37 (4):639-641
176.Johns, M.A., Mao, L.2007. Differentiation of the two rice subspecies indica and japonica:a gene ontology perspective. Functional Integrative Genomics,7:135-151
177.Jones, C., Edwards, K., Castaglione, S., Winfield, M., Sala, F., Van de Wiel, C., Bredemeijer, G., Vosman, B., Matthes, M., Daly, A.1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding,3 (5):381-390
178.Joshi, S., Bhave, S., Chowdari, K., Apte, G., Dhonukshe, B., Lalitha, K., Ranjekar, P., Gupta, V. 2001. Use of DNA markers in prediction of hybrid performance and heterosis for a three-line hybrid system in rice. Biochemical Genetics,39 (5):179-200
179.Joshi, S., Gupta, V., Aggarwal, R., Ranjekar, P., Brar, D.2000. Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. TAG Theoretical and Applied Genetics,100 (8):1311-1320
180.Kajiyama, T,. Miyahara, Y., Kricka, L.J., Wilding, P., Graves, D.J., Surrey, S., Fortina, P.2003. Genotyping on a thermal gradient DNA chip. Genome research,13 (3):467-475
181.Kardolus, J.P., Eck, H.J., Berg, R.G.1998. The potential of AFLPs in biosystematics:A first application inSolanum taxonomy (Solanaceae). Plant Systematics and Evolution,210(1):87-103
182.Kato, S., Kosaka, H., Hara, S.1928. On the affinity of rice varieties as shown by fertility of hybrid plants. Bulletin of Sciences of Faculty of Agriculture, Fukuoka, Japan,3:132-147
183.Kaundun, S., Matsumoto, S.2003. Development of CAPS markers based on three key genes of the phenylpropanoid pathway in Tea, Camellia sinensis (L.) O. Kuntze, and differentiation between assamica and sinensis varieties. TAG Theoretical and Applied Genetics,106 (3):375-383
184.Konieczny, A., Ausubel, F.M.1993. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. The Plant Journal,4 (2):403-410
185.Konishi, S., Izawa, T., Lin, S.Y., Ebana, K., Fukuta, Y., Sasaki, T, Yano, M.2006. An SNP caused loss of seed shattering during rice domestication. Science,312 (5778):1392-1396
186.Kuroda, Y., Tomooka, N., Kaga, A., Wanigadeva, S.M., Vaughan, D.A.2009. Genetic diversity of wild soybean (Glycine soja Sieb. Et Zucc.) and Japanese cultivated soybeans [G. max (L.) Merr.] based on microsatellite (SSR) analysis and the selection of a core collection. Genetic Resources and Crop Evolution,56 (8):1045-1055
187.Lee, G.A., Koh, H.J., Chung, H.K., Dixit, A., Chung, J.W., Ma, K.H., Lee, S.Y., Lee, J.R., Lee, G.S., Gwag, J.G.2009. Development of SNP-based CAPS and dCAPS markers in eight different genes involved in starch biosynthesis in rice. Molecular Breeding,24 (1):93-101
188.Li, C, Pan, D.J., Mao, X.X., Tu, C.Y., Zhou, H.Q., Fan, Z.L., Li, X.F.2006. The genetic diversity of gaozhou wild rice analyzed by SSR. Chinese Science Bulletin,51 (5):562-572
189.Li, J.M., Thomson, M., McCouch, S.R.2004. Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics,168 (4):2187-2195
19O.Li, R.H., Jiang, T.B., Xu, C.G., H, L.X., Wang, X.K.2000. Relationship between morphological and genetic differentiation in rice(Oryza sativa L.). Euphytica,114:1-8
191.Li, Y.B., Fan, C.C., Xing, Y.Z., Jiang, Y.H., Luo, L.J., Sun, L., Shao, D., Xu, C.J., Li, X.H., Xiao, J.H., He, Y.Q., Zhang, Q.F.2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nature genetics,43 (12):1266-1269. doi:10.1038/ng.977
192.Liang, F, Xin, X.Y., Hu, Z.J., Xu, J.D., Wei, G, Qian, X.Y., Yang, J.S., He, H.H., Luo, X.J.2011. Genetic analysis and fine mapping of a novel semidominant dwarfing gene LB4D in rice. Journal of integrative plant biology,53 (4):312-323. doi:10.1111/j.1744-7909.2011.01031.x
193.Lin, H.X., Qian, H.R., Zhuang, J.Y., Lu, J., Min, S.K., Xiong, Z.M., Huang, N., Zheng, K.L.1996. RFLP mapping of QTLs for yield and related characters in rice. Theoretical and Applied Genetics, 92:920-927
194.Lin, S.Y., Sasaki, T., Yano, M.1998. Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theoretical and Applied Genetics,96 (8):997-1003
195.Lin, Z.W., Griffith, M.E., Li, X.R., Zhu, Z.F., Tan, L.B., Fu, Y.C., Zhang, W.X., Wang, X.K., Xie, D.X., Sun, C.Q.2007. Origin of seed shattering in rice (Oryza sativa L.). Planta,226 (1):11-20. doi:10.1007/s00425-006-0460-4
196.Lorenzen, L., Boutin, S., Young, N., Specht, J., Shoemaker, R.1995. Soybean pedigree analysis using map-based molecular markers:I. Tracking RFLP markers in cultivars. Crop Science,35 (5): 1326-1336
197.Lu, B.R., Cai, X.X., Jin, X.2009. Efficient indica and japonica rice identification based on the InDel molecular method:Its implication in rice breeding and evolutionary research. Progress in Natural Science,19:1241-1252
198.Lu, H., Redus, M.A., Coburn, J.R., Rutger, J.N., McCOUCH, S.R., Tai, T.H.2005. Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis. Crop Science,45(1):66-76
199.Mackill, D., Zhang, Z., Redona, E., Colowit, P.1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome,39 (5):969-977
200.Mackill, D.J.1995. Classifyingjaponica rice cultivars with RAPD markers. Crop Science,35 (3): 889-894
201.Matsuo, T.M.1990. Great Achievement of Rice Science.(Vol.3 Genetices). Tokyo:Nousangyoson Culture Society,197-203
202.McCouch, S.R., Teytelman, L., Xu, Y.B., Lobos, K.B., Clare, K., Walton, M, Fu, B., Maghirang, R., Li, Z.K., Xing, Y.Z.2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research,9 (6):199-207
203.Messmer, M.M., Melchinger, A.E., Boppenmaier, J., Brunklaus-Jung, E., Herrmann, R.G 1992. Relationships among early European maize inbreds:I. Genetic diversity among flint and dent lines revealed by RFLPs. Crop Science,32 (6):1301-1309
204.Michaels, S.D., Amasino, R.M.2002. A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. The Plant Journal,14 (3):381-385
205.Mohan, M., Nair, S., Bhagwat, A., Krishna, T., Yano, M., Bhatia, C., Sasaki, T.1997. Genome mapping, molecular markers and marker-assisted selection in crop plants. Molecular Breeding,3 (2):87-103
206.Morishima, H., Sano, H.I., Oka, H.I.1992. Evolutionary studies in cultivated rice and its wild relatives. Oxford Surveys in Evolutionary Biology,8:135-184
207.Motoyuki, A., Hitoshi, S., Lin, S.Y., Toshio, Y., Tomonori, T., Asuka, N., Enrique, R.A., Qian, Q., Hidemi, K., Maoto, M.2005. Cytokinin Oxidase Regulates Rice Grain Productio. Science,309 (741):741-745
208.Mumm, R.H., Dudley, J.1994. A classification of 148 US maize inbreds:I. Cluster analysis based on RFLPs. Crop Science,34 (4):842-851
209.Murray, M.G., Thompson, W.F.1980. Rapid isolation of high molecular weight Plant DNA. Nucleic Acids Research,8:4321-4325
210.Nakagahra, M., Akihama, T., Hayashi, K.1975. Genetic variation and geographic-cline of esterase isozymes in native rice varieties. Japanese Journal of Genetics,50 (5):373-382
211.Nakamura, I., Chen, W.B., Sato, Y.I.1991. Analysis of chloroplast DNA from ancient rice seeds. Annual Report of National Institute of Genetics, Japan,2:108-109
212.Nasu, S., Suzuki, J., Ohta, R., Hasegawa, K., Yui, R., Kitazawa, N., Monna, L., Minobe, Y.2002. Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Research,9 (5):163-171
213.Neff, M.M., Neff, J.D., Chory, J., Pepper, A.E.1998. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms:experimental applications in Arabidopsis thaliana genetics. The Plant Journal,14 (3):387-392
214.Ni, J.J., Peter, M., Colowit, David, J., Mackill.2002. Evaluation of Genetic Diversity in Rice Subspecies Using Microsatellite Markers. Crop Science,42:601-607
215.Oka, H.I.1958. Variation and classification of cultivated rice. Indian Journal of Genetics and Plant Breeding,18:79
216.Perez, T., Albornoz, J., Dominguez, A.2002. An evaluation of RAPD fragment reproducibility and nature. Molecular Ecology,7 (10):1347-1357
217.Powell, W., Morgante, M., Andre, C., Hanafey, M., Vogel, J., Tingey, S., Rafalski, A.1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding,2 (3):225-238
218.Pradeep Reddy, M., Sarla, N., Siddiq, E.2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica,128 (1):9-17
219.Qian, Q., He, P., Zheng, X.W., Chen, Y, Zhu, L.H.2000. Genetic analysis of morphological index and its related taxonomic traits for classification of indicaljaponica rice. Science in China Series C: Life Sciences,43 (2):113-119
220.Rao, N.N., Prasad, K., Kumar, P.R., Vijayraghavan, U.2008. Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture. Proceedings of the National Academy of Sciences,105 (9):3646-3651. doi:10.1073/pnas.0709059105
221.Ravi, M., Geethanjali, S., Sameeyafarheen, F., Maheswaran, M.2003. Molecular marker based genetic diversity analysis in rice (Oryza sativa L.) using RAPD and SSR markers. Euphytica,133 (2):243-252
222.Ren, F.G., Lu, B.R., Li, S.Q., Huang, J.Y., Zhu, Y.G 2003. A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theoretical and Applied Genetics,108(1):113-120
223.Roussel, V., Leisova, L., Exbrayat, F., Stehno, Z., Balfourier, F.2005. SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000. TAG Theoretical and Applied Genetics,111 (1):162-170
224.Saini, N., Jain, N., Jain, S., Jain, R.K.2004. Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers. Euphytica,140 (3): 133-146
225.Sano, R., Morishima, H.1992. Indica-Japonica differentiation of rice cultivars viewed from variation in key characters and isozymes with special reference to landraces from the Himalayan hilly areas. Theoretical and Applied Genetics,84:266-274
226.Sano, Y., Sano, R.1990. Variation of the intergenic spacer region of ribosomal DNA in cultivated and wild rice species. Genome,33 (2):209-218
227.Sato, Y.I.1986. The Indica-Japonica differentiation of rice cultivars in Thailand and its neighbouring countries. New Frontiers Breeding Researches. Kasetsart Univ., Bangkok:Proc.5th SABRAO Intern. Congress,185-193
228.Second, G.1982. Origin of the genetic diversity of cultivated rice(Oryza sativa L.)A study of the polymorphism scored at 40 isozyme loci. Japanese Journal of Genetics,57:25-57
229.Shao, G.N., Tang, S.Q., Luo, J., Jiao, GA., Wei, X.J., Tang, A., Wu, J.L., Zhuang, J.Y., Hu, P.S. 2010. Mapping of qGL7-2, a grain length QTL on chromosome 7 of rice. Journal of Genetics and Genomics,37 (8):523-531
230.Shen, Y.J., Jiang, H., Jin, J.P., Zhang, Z.B., Xi, B., He, Y.Y., Wang, G, Wang, C., Qian, L., Li, X., Yu, Q.B., Liu, H.J., Chen, D.H., Gao, J.H., Huang, H., Shi, T.L., Yang, Z.N.2004. Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant physiology, 135 (3):1198-1205. doi:10.1104/pp.103.038463
231.Shomura, A., Izawa, T., Ebana, K., Ebitani, T., Kanegae, H., Konishi, S., Yano, M.2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nature genetics,40 (8):1023-1028. doi:10.1038/ng.169
232.Sjakste, T., Rashal, I., Roder, M.2003. Inheritance of microsatellite alleles in pedigrees of Latvian barley varieties and related European ancestors. Theoretical and Applied Genetics,106 (3):539-549
233.Song, X.J., Huang, W., Shi, M., Zhu, M.Z., Lin, H.X.2007. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature genetics,39 (5):623-630. doi:10.1038/ng2014
234.Song, Z.P., Xu, X., Wang, B., Chen, J.K., Lu, B.R.2003. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theoretical and Applied Genetics,107 (8): 1492-1499
235.St Martin, S.1982. Effective population size for the soybean improvement program in maturity groups 00 to Ⅳ. Crop Science,22 (1):151-152
236.Stuber, C.W., Lincoln, S.E., Wolff, D., Helentjaris, T., Lander, E.1992. Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers. Genetics,132 (3):823-839
237.Sun, J., Liu, D., Wang, J.Y., Ma, D.R., Tang, L., Gao, H., Xu, Z.J., Chen, W.F.2012. The contribution of intersubspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China. Theoretical and Applied Genetics,125 (6):1149-1157. doi:10.1007/s00122-012-1901-z
238.Sun, J., Qian, Q., Ma, D.R., Xu, Z.J., Liu, D., Du, H.B., Chen, W.F.2013. Introgression and selection shaping the genome and adaptive loci of weedy rice in northern China. The New phytologist,197 (1):290-299. doi:10.1111/nph.12012
239.Tang, T., Shi, S.H.2007. Molecular population genetics of rice domestication. Jouranl of Integrative Plant Biology,49:769-775
240.Tu, M., Lu, B.R., Zhu, Y.Y., Wang, Y.Y.2007. Abundant within-varietal genetic diversity in rice germplasm from Yunnan Province of China revealed by SSR fingerprints. Biochemical Genetics,45 (11-12):789-801
241.Udatsu, T., Fujiwara, H.1993. Application of the discriminant function to sub-species of rice (Oryze sativa) using the shape of motor cell silica body. Ethnobotany,5:107-1116
242.Wang, D.G., Fan, J.B., Siao, C.J., Berno, A., Young, P., Sapolsky, R., Ghandour, G., Perkins, N., Winchester, E., Spencer, J.1998. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science,280 (5366):1077-1082
243.Wang, H.T., Jin, F, Jiang, Y.J., Lin, Q.S., Xu, H., Cheng, L., Xia, Y.J., Liu, C.X., Chen, W.F., Xu, Z.J.2013.Effect of Environment and Genetic Recombination on Subspecies and Economic Trait Differentiation in the F2 and F3 Generation from Indica-Japonica Hybridization.Journal of Integrative Agriculture (in press).
244. Wang, K.J., Takahata, Y.2007. A preliminary comparative evaluation of genetic diversity between Chinese and Japanese wild soybean (Glycine soja) germplasm pools using SSR markers. Genetic Resources and Crop Evolution,54 (1):157-165
245.Wang, X.S., Zhao, X.Q., Zhu, J., Wu, W.R.2005. Genome-wide Investigation of Intron Length Polymorphisms and Their Potential as Molecular Markers in Rice. DNA Research,12:417-427
246.Wang, Z., Yu, C., Liu, X., Liu, S., Yin, C., Liu, L., Lei, J., Jiang, L., Yang, C., Chen, L., Zhai, H., Wan, J.2012. Identification of Indica rice chromosome segments for the improvement of Japonica inbreds and hybrids. Theoretical and Applied Genetics,124 (7):1351-1364. doi:10.1007/s00122-012-1792-z
247.Wang, Z.Y., Tanksley, S.D.1989. Restriction fragment length polymorphism in Oryza sativa L. Genome,32 (6):1113-1118
248.Welsh, J., Petersen, C., McClelland, M.1991. Polymorphisms generated by arbitrarily primed PCR in the mouse:application to strain identification and genetic mapping. Nucleic Acids Research,19 (2):303-306
249.Weng, J., Gu, S., Wan, X., Gao, H., Guo, T., Su, N., Lei, C., Zhang, X., Cheng, Z., Guo, X., Wang, J., Jiang, L., Zhai, H., Wan, J.2008. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell research,18 (12):1199-1209. doi:10.1038/cr.2008.307
250.Williams, J.G, Kubelik, A.R., Livak, K.J., Rafalski, J.A., Tingey, S.V.1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research,18 (22): 6531-6535
251.Xie, H., Guan, R.X., Chang, R.Z., Qiu, L.J.2005. Genetic diversity of Chinese summer soybean germplasm revealed by SSR markers. Chinese Science Bulletin,50 (6):526-535
252.Xie, X., Song, M.-H., Jin, F., Ahn, S.-N., Suh, J.-P., Hwang, H.-G, McCouch, S.2006. Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. TAG Theoretical and Applied Genetics,113 (5):885-894
253.Xiong, Z.Y., Zhang, S.J., Wang, Y.Y., Brian, V., Ford-Lioyd, Tu, M., Jin, X., Wu, Y., Yan, H.X., Yang, X., Liu, P., Lu, B.R.2010. Differentiation and distribution of indica and japonica rice varieties along the altitude gradients in Yunnan Province of China as revealed by InDel molecular markers. Genetic Resources and Crop Evolution,57:891-902
254.Xu, H., Liu, H.G, Yang, L., Zhu, C.J., Wang, J.Y., Yang, Q.H., Xu, Z.J., Zheng, J.K.2007. Subspeices characteristics in filial generation of cross between indica and japonica rice under different environments. Frontiers of Agriculture in China,1(3):281-288
255.Xu, H., Liu, H.G, Zhu, C.J., Yang, L., Guo, Y.H., Wang, J.Y., Yang, Q.H., Xu, Z.J., Zheng, J.K., Chen, W.F.2008. Effect of ecological environments on subspecies characteristics and economic traits in filial generations of cross between indica and japonica rice. Frontiers of Agriculture in China,2 (1):23-29
256.Xu, Y.B., Ishii, T., McCouch, S.R.2002. Marker-assisted evaluation of germ plasm of resources for plant breeding. Rice science:innovation and impact for livelihood. Beijing:Proceeding of the International Rice Research Conference,213-219
257.Xue, W.Y., Xing, Y.Z., Weng, X.Y., Zhao, Y., Tang, W.J., Wang, L., Zhou, H.J., Yu, S.B., Xu, C.G., Li, X.H., Zhang, Q.F.2008. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nature genetics,40 (6):761-767
258.Yamamoto, T., Koboki, Y., Lin, S.Y., Sasaki, T., Yano, M.1998. Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theoretical and Applied Genetics,97:37-44
259.Yamamoto, T., Lin, H.X., Sasaki, T., Yano, M.2000. Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny. Genetics,154 (2):885-891
260.Yamanaka, S., Nakamura, I., Watanabe, K., Sato, Y.-I.2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. TAG Theoretical and Applied Genetics,108 (7):1200-1204
261.Yang, G.P., Maroof, M.S., Xu, C.G., Zhang, Q.F., Biyashev, R.1994. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Molecular and General Genetics MGG,245 (2):187-194
262.Yu, B.L., Huang, Z.F., Zhou, W.J., Zhang, W.J.2001. The creation of 1H chromosome-specific CAPs and ASA markers of barley]. Yi chuan xue bao= Acta genetica Sinica,28 (6):550
263.Yu, G.Q., Bao, Y., Shi, C.H., Dong, C.Q., Ge, S.2005. Genetic diversity and population differentiation of Liaoning weedy rice detected by RAPD and SSR markers. Biochemical Genetics, 43 (5):261-270
264.Yu, L.X., Nguyen, H.T.1994. Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). TAG Theoretical and Applied Genetics,87 (6):668-672
265.Zabean, M.1994. The abstract of molecular biology symposium. Amsterdam, The Netherlands: 1844
266.Zabeau, M., Vos, P.1993. Selective restriction fragment amplification:a general method for DNA fingerprinting. EP Patent 0,534,858,
267.Zeder, M.A., Emshwiller, E., Smith, B.D., Bradley, D.G.2006. Documenting domestication:the intersection of genetics and archaeology. Trends in genetics:TIG,22 (3):139-155. doi:10.1016/j.tig.2006.01.007
268.Zhang, B.S., Tian, F., Tan, L.B., Xie, D.X., Sun, C.Q.2011a. Characterization of a novel high-tillering dwarf 3 mutant in rice. Journal of Genetics and Genomics,38 (9):411-418. doi:10.1016/j.jgg.2011.08.002
269.Zhang, J.W., Feng, Q., Jin, C.Q., Qiu, D.Y., Zhang, L.D., Xie, K.B., Yuan, D.J., Han, B., Zhang, Q.F., Wang, S.P.2005. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. The Plant Journal,42 (5):772-780
270.Zhang, P., Li, J.Q., Li, X.L., Liu, X.D., Zhao, X.J., Lu, Y.G.2011b. Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers. PloS one,6 (12): 411-418. doi:10.1371/journal.pone.0027565
271.Zhang, Q.E., Saghai-Maroof, M.A., Lu, T.Y., Shen, B.Z.1992. Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis. Theoretical and Applied Genetics,83: 495-499
272.Zhang, Q.F., Gao, Y.J., Yang, S.H., Ragab, R.A., Saghai Maroof, M.A., Li, Z.B.1994. A diallel analysis of heterosis in elite hybrid rice based in RFLPs and microsatellites. Theoretical and Applied Genetics,89:185-192
273.Zhao, X.Q., Yang, L., Zheng, Y, Xu, Z.H., Wu, W.R.2009. Subspecies-specific intron length polymorphism markers reveal clear genetic differentiation in common wild rice (Oryza rufipogon L.) in relation to the domestication of cultivated rice (O. sativa L.). Journal of Genetics and Genomics,36 (7):435-442
274.Zhou, L.Q., Wang, Y.P., Li, S.G.2006. Genetic Analysis and Physical Mapping of Lk-4 (t), a Major Gene Controlling Grain Length in Rice, with a BC2 F2 Population. Acta Genetica Sinica,33 (1): 72-79
275.Zietkiewicz, E., Rafalski, A., Labuda, D.1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics,20 (2):176-183
2.鲍根良,小林麻子,富田桂,金庆生,张小明,严文潮,叶胜海.2005.粳稻近缘品种的SSR分析.中国水稻科学,19(1)：21-24
3.才宏伟,王象坤,程侃声,张尧忠.1992.亚洲稻(Oryza Sativa L.)分类的酯酶同工酶研究——兼论水稻酯酶同工酶基因表达的时空性.西南农业学报(4)：19-24
4.蔡健,兰伟.2005.利用AFLP分子标记预测水稻杂种优势.作物学报,31(4)：526-528
5.陈芬,陈雨,曲延英,潘大建,杨庆文,井赵斌,刘维,范芝兰,陈建酉,李晨.2009.粤北普通野生稻籼粳分化的SSR分析.基因组学与应用生物学,28(1)：51-56
6.陈亮,梁春阳,孙传清,金德敏,姜廷波,王斌,王象坤.2002.AFLP和RFLP标记检测水稻亲本遗传多样性比较研究.中国农业科学,35(6)：589-595
7.陈书强,徐正进,陈温福,徐海,刘宏光,朱春杰,王韵,王嘉宇.2007.籼粳稻杂交后代维管束性状与穗部性状的关系.华北农学报(5)：8-14
8.陈温福,潘文博,徐正进.2006.我国粳稻生产现状及发展趋势.沈阳农业大学学报,37(6)：801-805
9.陈温福,徐正进,张龙步.2003.水稻超高产育种生理基础.沈阳：辽宁科学技术出版社,146-155
10.陈文炳.1999.亚洲栽培稻起源分化的遗传学研究.上海农业学报,15(3)：42-48
11.陈雨,潘大建,曲延英,范芝兰,陈建酉,李晨.2007.水稻籼粳分化研究进展.广东农业科学(12)：3-7
12.陈跃进,丁效华,杨长寿,张桂权,卢永根.2002.水稻粳型亲籼系籼粳型属性的程氏指数鉴定.28(4)：284-286
13.陈跃进,张桂权,卢永根.2007.利用微卫星分子标记法研究水稻亲缘关系.湖南农业大学学报,33(3)：258-261
14.程侃声.1993.亚洲栽培稻籼粳亚种的鉴别.昆明：云南科技出版社,56-69
15.程玲,王鹤潼,荣俊珍,徐正进.2012.生态条件对籼粳稻杂交F2代亚种特性分化与经济性状的影响.种子,31(3)：1-6
16.程式华,李建.2007.现代中国水稻.北京：金盾出版社,52-55
17.程式华,廖西元,闵绍楷.1998.中国超级稻研究：背景、目标和有关问题的思考.中国稻米(1)：3-5
18.程式华,毛传澡,占小登,斯华敏,孙宗修.2001.籼粳交DH群体和RIL群体的构建及籼粳 分化.中国水稻科学,15(4)：257-260
19.程新奇,严钦泉,周清明,易哪.2006.籼、粳稻及其杂种谷粒苯酚染色反应研究.杂交水稻,21(3)：72-74
20.崔莹莹,郭安平,王晓玲,孔华,郭运玲,贺立卡.2009.RAPD和SSR标记检测海南普通野生稻籼粳分化的比较研究.热带作物学报,30(6)：773-780
21.戴小军,欧立军,李文嘉,刘平,陈良碧.2007.水稻籼型,粳型特异性分子标记的研究和应用.湖南农业大学学报,33：8
22.邓华凤,何强,舒服,张武汉,杨飞,荆彦辉,东丽,谢辉.2006.中国杂交粳稻研究现状与对策.杂交水稻,21(1)：1-6
23.丁效华,陈跃进,杨长寿,张泽民,卢永根,张桂权.2003.水稻粳型亲籼系粳型性的判别.中国水稻科学,9(1)：58-61
24.丁颖.1957.中国栽培稻种的起源及其演变.农业学报,8(3)：243-260
25.丁颖.1983.中国栽培稻种的分类.丁颖稻作论文选集.北京：中国农业出版社,74-93
26.段世华,毛加宁,朱英国.2002.用微卫星DNA标记对我国杂交水稻主要恢复系遗传差异的检测分析.遗传学报,29(3)：250-254
27.段中岗,梁程邺.2005.改良聚丙稀酰胺凝胶电泳法测定籼粳分化的同工酶带.兰州大学学报(自然科学版),41(4)：30-33
28.樊叶杨,庄杰云,吴建利,孙宝龙,郑康乐.2000.应用微卫星标记鉴别水稻籼粳亚种.遗传,22(6)：392-394
29.方宣钧,黄育民,陈启锋.1999.若干水稻品种(组合)的等位酶和RAPD遗传分析.中国农业科学,32(2)：1-8
30.冯芳君,罗利军,李荧,周立国,徐小艳,吴金红,陈宏伟,陈亮,梅捍卫.2005.水稻InDel和SSR标记多态性的比较分析.分子植物育种,3(5)：725-730
31.高立志.1999.博士后出站报告.北京：中国农业科学院,8-19
32.顾铭洪.2010.水稻高产育种中一些问题的讨论.作物学报,36(9)：1431-1439
33.郭艳华,徐海,朱春杰,徐正进.2008.水稻籼粳交后代亚种特性的变化及其与维管束性状的关系.种子,27(3)：1-4
34.韩双艳,郭勇.2001AFLP在分子生物学研究中的应用.生物技术通报(2)：22-24
35.何光华,郑家奎,李耘,杨正林.1993.不同类型水稻产量组分研究.西南农业大学学报,15(5)：438-440
36.何华勤,贾小丽,梁义元,沈荔花,宋碧清,郭玉春,梁康迳,林文雄.2004.RAPD和ISSR标记对水稻化感种质资源遗传多态性的分析.遗传学报,31(9)：888-894
37.何予卿,张宇,孙梅,何光存,王松文,朱英国.2001.利用ISSR分子标记研究栽培稻和野生稻亲缘关系.农业生物技术学报,9(2)：123-127
38.贺学勤,刘庆昌,翟红,王玉萍.2005.用RAPD,ISSR和AFLP标记分析系谱关系明确的甘薯品种的亲缘关系.作物学报,31(10)：1300-1304
39.华明娟,马厚勋,牛永红,谢正祥.2008.KLOTHO的3个SNP位点分布与几种疾病相关性的研究.中国现代医学杂志,18(9)：1174-1178
40.黄燕红,孙新立,王象坤.2005.中国栽培稻遗传多样性中心和起源研究.植物遗传资源学报,6(2)：125-129
41.贾继增.1996.分子标记种质资源鉴定和分子标记育种.中国农业科学,29(4)：1-10
42.姜健,李金泉,徐正进,张龙步,金成海.2001.水稻籼粳交主要性状遗传规律的研究.吉林农业科学,26(2)：2-6
43.姜树坤,钟鸣,徐正进,张丽,马慧,刘少霞.2006.基于RAPD标记进行水稻籼粳分类研究.沈阳农业大学学报,37(4)：639-641
44.李海明,胡瑞法.2008.国外稻种资源对我国水稻生产的贡献.浙江大学学报(农业与生命科学版),34(1)：65-72
45.李红宇,侯昱铭,陈英华,徐正进,陈温福,赵明辉,马殿荣,徐海,王嘉宇.2009.用SSR标记评估东北三省水稻推广品种的遗传多样性.中国水稻科学,23(4)：383-390
46.李金泉,姜健,徐正进,张龙步,陈温福.2000.籼粳稻杂交分类性状遗传研究初报.沈阳农业大学学报,31(3)：233-237
47.李进波,牟同敏,方宣钧.2002.12个水稻光温敏核不育系的ISSR标记鉴定及遗传分析.中国农学通报,18(1)：6-9
48.李任华,徐才国,何予卿,袁隆平,王象坤.1998.水稻亲本遗传分化程度与籼粳杂种优势的关系.作物学报,24(5)：564-576
49.李旭毅,池忠志,姜心禄,郑家国.2012.成都平原两熟地区籼粳稻品种籽粒灌浆特性.中国农业科学,45(16)：3256-3264
50.李余良,吉田晋弥.2000.RAPD标记在日本兵库县20个酒米品种类群划分中的应用.华南农业大学学报,21(4)：4-6
51.李云海,肖晗,张春庆,胡国成,于永红,贾继增,孙宗修.1999.用微卫星DNA标记检测中国主要杂交水稻亲本的遗传差异.植物学报,41(10)：1061-1066
52.林世成,闵绍楷.1991.中国水稻品种及其系谱.上海：上海科技出版社,106-138
53.刘万友,杨振玉.1991a.应用程氏指数法进行籼梗交F1分类.沈阻农业大学学报,22(增刊)：82-86
54.刘万友,杨振玉.1991b.程氏指数法分类性状的遗传分析.沈阳农业大学学报,22(增刊)：87-91
55.刘炜,李自超,史延丽,王坚,马洪文,张洪亮.2006.利用SSR标记进行粳稻品种的遗传多样性研究.西南农业学报,18(5)：509-513
56.刘之熙,刘云开,詹庆才.2008.水稻孕穗期耐冷基因的CAPs标记辅助选择.湖南农业大学学 报：自然科学版,34(2)：117-131
57.龙雯虹,许明辉.2002.籼稻和粳稻品种在RAPD上的遗传差异.云南农业大学学报,17(3)：245-247
58.卢泳全,汪旭升,黄伟素,肖天霞,郑燕,吴为人.2006.基于水稻内含子长度多态性开发禾本科扩增共有序列遗传标记.中国农业科学,39(3)：433-439
59.陆永法,马荣荣,王晓燕,李信年,周华成,章志远,华国来.2007.甬优系列杂交水稻SSR标记指纹图谱和籼粳属性.中国水稻科学,21(4)：443-446
60.毛艇,徐海,郭艳华,朱春杰,陈凯,王嘉宇,徐正进.2009.利用SSR分子标记进行水稻籼粳分类体系的初步构建.华北农学报,24(1)：119-124
61.梅捍卫,黎志康,王一平,余新桥,钟代彬,罗利军,应存山.1997"Lemont/特青”重组自交系的六性状籼梗分类的研究.中国水稻科学,11(14)：193-197
62.欧立军,陈觉梁,黄光文,陈良碧.2007.三系不育系水稻叶绿体DNA遗传多态性研究.湖南农业大学学报：自然科学版(S1)
63.彭俊华.1991.水稻产量的基因型×环境互作分析及生态类型区的划分.四川农业大学学报,9(3)：327-333
64.彭俊华,李有春.1990.水稻籼、粳两亚种产量构成特点的剖析与比较.四川农业大学学报,8(3)：162-168
65.彭锁堂,王海岗,魏兴华,吕建珍,张晓丽,袁筱萍,杨武德.2008.我国三系杂交稻主要不育系的微卫星标记多样性和遗传结构分析.中国水稻科学,22(4)：365-369
66.齐永文,张冬玲,张洪亮,王美兴,孙俊立,廖登群,魏兴华,裘宗恩,汤圣祥,曹永生.2006.中国水稻选育品种遗传多样性及其近50年变化趋势.科学通报,51(6)：693-699
67.钱惠荣,沈波,林鸿宣,陆军,庄杰云,郑康乐.1994.应用水稻籼粳特异性RFLP标记及广亲和品种亲缘关系分析.中国水稻科学,8(2)：65-71
68.秦君,李英慧,刘章雄,关荣霞,张孟臣,常汝镇,李广敏,马峙英,邱丽娟.2008.用SSR分子标记解析大豆品种绥农14与系谱亲本间的遗传关系.中国农业科学,41(12)：3999-4007
69.矢野昌裕.1992.水稻RFLP研究及其在遗传育种上的应用.杂交水稻,46(2)：47-48
70.苏泽胜,李泽福.2007.安徽省超级稻研究与应用现状及展望.沈阳农业大学学报,38(5)：739-743
71.隋炯明,梁国华,李欣,吴书俊,严松,赵祥强,张正球,顾铭洪.2006.籼稻多蘖矮半矮秆基因的遗传分析和基因定位.作物学报,32(6)：845-850
72.孙传清,姜廷波,陈亮.2000.水稻杂种优势与遗传分化关系的研究.作物学报,26(6)：641-649
73.孙传清,王象坤,吉村淳,土井一行,岩田伸夫.1997.普通野生稻和亚洲栽培稻核基因组的RFLP分析.中国农业科学,30(4)：37-44
74.孙新立,才宏伟,王象坤.1996.水稻同工酶聚丙烯酰胺凝胶电泳方法探索.中国水稻科学,10 (1)：43-50
75.孙新立,才宏伟,王象坤.1997.东亚、南亚籼稻同工酶基因的异同分析.中国农业科学,30(5)：50-55
76.孙宗修,程式华.1994.杂交水稻育种从三系、两系到一系.北京：中国农业科技出版社,220-250
77.汤陵华,孙加祥,宇田津徹朗,佐藤洋一朗.2003.太湖地区水稻地方品种籼粳分类方法的比较.江苏农业学报,19(3)：139-144
78.汤圣祥,江云珠,魏兴华,李自超,余汉勇.2002.中国栽培稻同工酶的遗传多样性.作物学报,28(2)：203-207
79.汤圣祥,闵绍楷,佐藤洋一郎.1993.中国粳稻起源的探讨.中国水稻科学,7(3)：129-136
80.王斌.2000.AFLP的原理及其在植物分子生物学研究中的应用.北京：科学出版社
81.王才林,宇田津彻朗,藤原宏志,汤陵华,邹江石.1997.栽培稻机动细胞硅酸体的形态特征及其在籼,粳亚种间的差异.江苏农业学报,13(3)：129-138
82.王才林,朱镇,张亚东,赵凌.2008.江苏省粳稻品质改良的成就、问题与对策.江苏农业学报,24(2)：199-203
83.王春明,安井秀,吉村醇,苏昌潮,翟虎渠,万建民.2003.水稻叶蝉抗性基因回交转育和CAPS标记辅助选择.中国农业科学,36(3)：237-241
84.王家祥,陈友桃,黄娟,乔卫华,张万霞,杨庆文.2009.中国普通野生稻(Oryza rufipogon Griff.)原生保护与未保护居群的遗传多样性比较.作物学报,35(8)：1474-1482
85.王建平,孙传清,李自超,李任华,王象坤.1998.两套水稻DH群体的形态指数和同工酶的籼粳分类研究.中国农业科学,31(4)：8-15
86.王胜军,陆作楣.2006.中国杂交籼稻遗传多样性演变及其分析.江苏农业学报,22(3)：192
87.王松文,刘霞,王勇,徐才国,施利利,张欣,丁得亮2006.RFLP揭示的籼粳基因组多态性.中国农业科学,39(5)：1038-1043
88.王象坤.1994.中国普通野生稻(Oryza rufipogon Griff.)研究中几个重要问题的初步探讨.农业考古(1)：48-51
89.王象坤,程侃声,黄迺威,罗军,卢义宣,刘光荣.1987.亚洲栽培稻起源、演化中两个重要稻种类型的研究.遗传学报,14(4)：262-270
90.王象坤,李任华,孙传清,李自超,才宏伟,孙新立.1997.亚洲栽培稻的亚种及亚种间杂交稻的认定与分类.科学通报,42(24)：2596-2603
91.王象坤,孙传清,才宏伟,张居正.1998.中国稻作起源与演化.科学通报,43(22)：2354-2363
92.王艳红,王辉,高立志.2003.普通野生稻(Oryza rufipogon Griff.)的SSR遗传多样性研究.西北植物学报,23(10)：1750-1754
93.王韵,徐正进,陈温福,赵明辉,方萍.2007.辽宁水稻直立穗型基因位点SSR标记变异分析. 沈阳农业大学学报,38(3)：395-397
94.王振山,陈皓,李小兵,梁承志,王象坤,朱立煌.1998.一个AA基因组特异的串联重复序列的克隆及其在中国普通野生稻和栽培稻中的分化特征.植物学报,40(10)：906-914
95.熊振民,程式华,曹立勇.1989.水稻籼粳杂种优势利用研究的现状与展望.水稻文摘(10)：2-10
96.徐正进,陈温福,张龙步,彭应财,张俊国.1996.水稻穗颈维管束性状的类型间差异及其遗传的研究.作物学报,22(2)：167-172
97.徐正进,李金泉,黄瑞冬,姜健,陈温福,张龙步.2003a.籼粳稻杂交后代亚种特性表现与分类研究.中国农业科学,36(12)：1571-1575
98.徐正进,李金泉,姜健,荆彦辉,张文忠,陈温福,张龙步.2003b.籼粳稻杂交育成品种的亚种特征性状及其与经济性状的关系.作物学报,29(5)：735-739
99.许旭明,张受刚,梁康迳,卓伟,马彬林,杨腾帮.2009.水稻籼粳杂交衍生系创新效果评价与利用.福建农林大学学报,38(2)：113-118
100.许旭明，张受刚,卓伟,杨藤帮,范祖军.1997.水稻广亲和恢复系GK729的表现及其利用.作物学报,15(1)：17-20
101.杨守仁,沈锡英,顾慰连,曹淡君.1962.籼粳稻杂交育种研究.作物学报,1(2)：97-102
102.杨守仁,沈锡英,顾慰连.1973.籼粳稻杂交育种研究.遗传学通讯,(2)：34-38.
103.杨守仁.1987.三十六年籼粳杂交稻育种的研究及发展.沈阳农业大学学报,18(3)：3-9
104.杨守仁,张龙步,陈温福,徐正进,王进民.1996.水稻超高产育种的理论和方法.作物学报,22(3)：295-304
105.杨守仁,赵纪书.1959.籼粳稻杂交问题之研究.农业学报,10(4)：256-268
106.杨振玉,陈秋柏,陈荣芳,苏正基,贾宝清,佟景兴,王健群.1981.水稻粳型恢复系C57的选育.作物学报,7(3)：153-156
107.杨振玉.1998.北方杂交粳稻发展的思考与展望.作物学报,24(6)：840-846
108.杨忠义,曹永生,苏艳,刘晓利,李华慧,卢义宣.2007.中国栽培稻的籼粳分化机理再论.云南农业学报,20(3)：321—326
109.应杰政,施勇烽,庄杰云,薛庆中.2007.用微卫星标记评估中国水稻主栽品种的遗传多样性.中国农业科学,40(4)：649-654
110.于舰,庞灏,王保捷.2008.人类酪氨酸羟化酶基因SNP多态性与精神疾病的相关性.法医学杂志,24(5)：333-335
111.袁隆平.1973.利用野败选育三系的进展.湖南农业科学,(4)：l-5.
112.袁隆平.1987.杂交水稻的育种战略设想.杂交水稻,1(1)：3
113.袁隆平.2002.杂交水稻学.北京：中国农业出版社,192-204
114.袁隆平,武小金,颜应成,罗孝和.1997.水稻广谱广亲和系的选育策略.中国农业科学,30(4)：1-8
115.张海英,王永健,许勇,张峰,康国斌.2001.黄瓜育种中“血缘”遗传关系分析研究.华北农学报,16(2)：20-26
116.张汉尧,刘小珍,杨宇明.2006.RFLP在植物遗传育种研究中的应用.西南林学院学报,26(1)：74-79
117.张建勇,袁佐清,李仕贵.2005.微卫星标记分析籼粳亚种间的遗传多样性.山东理工大学学报：自然科学版,19(2)：22-27
118.张培江,付强,占新春,吴爽.2007.超高产杂交粳稻育种研究与实践.中国农学通报,23(10)：123-130
119.张受刚,许旭明.2006.粳型亲籼恢复系的选育与利用.福建稻麦科技,24(1)：3-5
120.张尧忠,徐宁生.1998.酯酶酶带分类法及稻种籼粳分类体系的讨论.西南农业学报,11(3)：88-93
121.章志宏,陈明明,唐俊,胡中立.2002.水稻穗颈维管束和穗部性状的遗传分析.作物学报,28(1)：86-89
122.赵安常,芮重庆.1982.籼稻数量性状配合力的研究.作物学报,8(2)：113-117
123.赵伟,夏寒冰,章淑杰,蔡星星,卢宝荣.2008.籼-粳稻特异插入/缺失分子标记揭示的稻属植物遗传分化.复旦学报：自然科学版,47(3)：281-287
124.赵向前.2007.水稻内含子长度多态性分子标记的开发和应用.杭州：浙江大学
125.赵勇,杨凯,Cheema, A.A.,翁跃进.2002.利用水稻功能基因SSR标记鉴定水稻种质资源.中国农业科学,35(4)：349-353
126.郑景生,陈良兵,符文英,李义珍.2004.野生稻不同基因组的SSR多样性分析.分子植物育种,2(1)：25-33
127.中国农业科学院.1986.中国稻作学.北京：农业出版社,309-316
128.周汇,Glaszmann, J.C.,程侃声,施晓群.1988.栽培稻分类方法的比较.中国水稻科学,2(1)：1-7
129.周建民,程祝宽,封功能,龚志云,顾铭洪.2004.串联重复序列在籼粳亚种间的差异及其与栽培稻遗传分化关系的研究.扬州大学学报(农业与生命科学版),25(2)：1-4
130.周开达,汪旭东,李仕贵,李平,黎汉云,黄国寿,刘太清,沈茂松.1997.亚种间重穗型杂交稻研究.中国农业科学,30(5)：91-93
131.周拾禄.1948.中国是稻之起源地.中国稻作,5(5)：53-54
132.朱春杰,徐海,郭艳华,王嘉宇,刘宏光,徐正进.2007.籼粳交重组自交系亚种属性判别及维管束性状的变异.中国水稻科学,21(6)：619-624
133.朱英国,梅启明,余金洪,桂东湖.1982.水稻品种酯酶同工酶的初步研究.作物学报,8(2)：73-80
134.朱作峰,孙传清,付永彩,张培江,王象坤.2002.用SSR标记比较亚洲栽培稻与普通野生稻的遗传多样性.中国农业科学,35(12)：1437-1441
135.朱作峰,孙传清,李自超,王象坤.2001.用SSR标记对水稻品种的分类研究.农业生物技术学报,9(1)：58-61
136.庄杰云,钱惠荣,林鸿宣,陆军,程式华,应存山,罗利军,朱旭东,董凤高,闵绍楷,孙宗修,郑康乐.1995.应用RFLP标记研究亚洲栽培稻的起源与分化.中国水稻科学,9(3)：135-140
137.卓伟.2008.水稻籼粳杂交育种系谱ILP标记及不同籼粳分化类型的光合特性研究.福建农林大学
138.邹江石,吕川根.2005.水稻超高产育种的实践与思考.作物学报,31(2)：254-258
140.Akopyanz, N., Bukanov, N.O., Westblom, T.U., Berg, D.E.1992. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori. Nucleic Acids Research,20 (23):6221-6225
141.Almanza-Pinzon, M.I., Khairallah, M., Fox, P.N., Warburton, M.L.2003. Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica,130 (1):77-86
142.Arai-Kichise, Y., Shiwa, Y., Nagasaki, H., Ebana, K., Yoshikawa, H., Yano, M., Wakasa, K.2011. Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing. Plant and cell physiology,52 (2):274-282
143.Bai, X.F., Luo, L.j., Yan, W.H., Kovi, M.R., Zhan, W., Xing, Y.Z.2010. Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. BMC genetics,11 (1):16
144.Bao, J.S., Corke, H., Sun, M.2006. Analysis of genetic diversity and relationships in waxy rice (Oryza sativa L.) using AFLP and ISSR markers. Genetic Resources and Crop Evolution,53 (2): 323-330
145.Barth, S., Melchinger, A., Lubberstedt, T.2002. Genetic diversity in Arabidopsis thaliana L. Heynh. investigated by cleaved amplified polymorphic sequence (CAPS) and inter-simple sequence repeat (ISSR) markers. Molecular Ecology,11 (3):495-505
146.Baumbusch, L.O., Sundal, I.K., Hughes, D.W., Galau, GA., Jakobsen, K.S.2001. Efficient protocols for CAPS-based mapping inArabidopsis. Plant Molecular Biology Reporter,19 (2): 137-149
147.Belaj, A., Satovic, Z., Cipriani, G., Baldoni, L., Testolin, R., Rallo, L., Trujillo,1.2003. Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. TAG Theoretical and Applied Genetics, 107 (4):736-744
148.Bornet, B., Branchard, M.2001. Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Molecular Biology Reporter,19 (3): 209-215
149.Cai, X.X., Liu, J., Qiu, Y.Q., Zhao, W., Song, Z.P., Lu, B.R.2007. Differentiation of indica-japonica rice revealed by insertion/deletion (InDel) fragments obtained from the comparative genomic study of DNA sequences between 93-11 (indica) and Nipponbare (japonica). Frontiers of Biology in China,2:291-296
150.Chang, T.T.1976. The origin, evolution, cultivation, dissemination and diversification of Asian and African rices. Euphytica,25:435-441
151.Chang, T.T., Oka, H.I.1976. Genetic variousness in the climatic adaption of rice cultivars. Proceedings of the symposium on climate and rice. Los Banˇos, Philippines:International Rice Research Institute,87-111
152.Chen, W.F., Xu, Z.J., Zhang, L.B.1995. Comparative study of stomata density and gas diffusion resistance in leaves of various types of rice. Korean Journal of Crop Science,40 (2):125-132
153.Cheng, K.S.1985. A statistical evaluation of the classification of rice cultivars into hsien and keng subspecies. Rice genetics newsletter,2:46-48
154.Cheng, K.S., Zhou, J.W., Lu, Y.X., Luo, J., Huang, N.W., Liu, G.R., Wang, X.K.1984. Studies on the indigenous in Yunnan and their utilization Ⅱ-A revised classification of Asian culture rice. Acta Agronomica Sinica,4:271
155.Chin, J.H., Kim, J.H., Kwon, S.W., Cho, Y.I., Koh, H.J., Piao, Z.2003. Identification of subspecies-specific RAPD markers in rice. Korean Journal of Breeding,35:
156.Cox, T.S., Kiang, Y.T., Gorman, M.B., Rodgers, D.M.1985. Relationship between coefficient of parentage and genetic similarity indices in the soybean. Crop Science,25 (3):529-532
157.Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T, Shimatani, Z., Yano, M., Yoshimura, A. 2004. Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-deviated gene expression independently of Hdl. Genes & development,18 (8): 926-936. doi:10.1101/gad.1189604
158.Dreisigacker, S., Zhang, P., Warburton, M., Van Ginkel, M., Hoisington, D., Bohn, M., Melchinger, A.2004. SSR and pedigree analyses of genetic diversity among CIMMYT wheat lines targeted to different megaenvironments. Crop Science,44 (2):381-388
159.Fan, C.C., Xing, Y.Z., Mao, H.L., Lu, T.T, Han, B., Xu, C.G, Li, X.H., Zhang, Q.F.2006. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics,112 (6):1164-1171. doi:10.1007/s00122-006-0218-1
160.Fan, Y.Y., Zhuang, J.Y., Wu, J.L., Sun, B.L., Zheng, K.L.2000. SSLP based Identification of Subspecies in Rice (Oryza sativa L.). Hereditas,Beijing,6:392-394
161.Feltus, F.A., Wan, J., Schulze, S.R., Estill, J.C., Jiang, N., Paterson, A.H.2004. An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome research,14 (9):1812-1819
162.Fu, Y.B., Peterson, G.W., Yu, J.K., Gao, L.F., Jia, J.Z., Richards, K.W.2006. Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers. TAG Theoretical and Applied Genetics,112 (7):1239-1247
163.Fuentes, J.L., Escobar, F., Alvarez, A., Gallego, G., Duque, M.C., Ferrer, M., Deus, J.E., Tohme, J.M.1999. Analyses of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers. Euphytica,109 (2):107-115
164.Fukuvama, T.2001. Variation of the vascular bundle system in Asian wild rice,Oryza rufipogon and its relationship to rachis branch number and growth habit. Euphytica,117:13-18
165.Fukuvama, T., Takavama, T.1995. Variations of the vascular bundle system in Asian rice cultivars. Euphytica,86:227-231
166.Gao, L.Z., Hong, S.G.D.-y.2000. Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff, in China. Theoretical and Applied Genetics,101 (3):494-502
167.Garcia, E., Jamilena, M., Alvarez, J., Arnedo, T., Oliver, J., Lozano, R.1998. Genetic relationships among melon breeding lines revealed by RAPD markers and agronomic traits. TAG Theoretical and Applied Genetics,96 (6):878-885
168.Glaszmann, J.C.1987. Isozymes and classification of Asian rice varieties, heoretical and Applied Genetics,74(1):21-30
169.Glaszmann, J.C., Reyes, B.G., Khush, G.S.1988. Electrophoretic variation of isozymes in plumules of rice Oryza sativa L-a key to the identification of 76 alleles at 24 loci. IRRI Research Paper Series, (134):1-14
170.Grodzicker, T., Williams, J., Sharp, P., Sambrook, J.1974. Physical mapping of temperature-sensitive mutations of adenoviruses. Cold Spring Harbor symposia on quantitative biology. Cold Spring Harbor Laboratory Press,439-446
171.Han, B., Xue, Y.B.2003. Genome-wide intraspecific DNA-sequence variation in rice. Current Opinion in Plant Biology, (6):134-138
172.Huang, X.H., Kurata, N., Wei, X.H., Wang, Z.X., Wang, A.H., Zhao, Q., Zhao, Y., Liu, K.Y., Lu, H.Y., Li, W.J., Guo, Y.L., Lu, Y.Q., Zhou, C.C., Fan, D.L., Weng, Q.J., Zhu, C.R., Huang, T., Zhang, L., Wang, Y.C., Feng, L., Furuumi, H., Kubo, T., Miyabayashi, T., Yuan, X.P., Xu, Q., Dong, G.J., Zhan, Q.L., Li, C.Y., Fujiyama, A., Toyoda, A., Lu, T.T., Feng, Q., Qian, Q., Li, J.Y., Han, B.2012. A map of rice genome variation reveals the origin of cultivated rice. Nature,490 (7421):497-501. doi:10.1038/nature11532
173.Huang, X.Z., Qian, Q., Liu, Z.B., Sun, H.Y., He, S.Y., Luo, D., Xia, G.M., Chu, C.C., Li, J.Y., Fu, X.D.2009. Natural variation at the DEP1 locus enhances grain yield in rice. Nature genetics,41 (4): 494-497
174.Jena, K., Mackill, D.2008. Molecular markers and their use in marker-assisted selection in rice. Crop Science,48 (4):1266-1276
175.Jiang, S.K., Zhong, M., Xu, Z.J., Zhang, L., Ma, H., Liu, S.X.2006. Classification of Rice Cultivars with RAPD Molecular Markers. Journal of Shenyang Agricultural University,37 (4):639-641
176.Johns, M.A., Mao, L.2007. Differentiation of the two rice subspecies indica and japonica:a gene ontology perspective. Functional Integrative Genomics,7:135-151
177.Jones, C., Edwards, K., Castaglione, S., Winfield, M., Sala, F., Van de Wiel, C., Bredemeijer, G., Vosman, B., Matthes, M., Daly, A.1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding,3 (5):381-390
178.Joshi, S., Bhave, S., Chowdari, K., Apte, G., Dhonukshe, B., Lalitha, K., Ranjekar, P., Gupta, V. 2001. Use of DNA markers in prediction of hybrid performance and heterosis for a three-line hybrid system in rice. Biochemical Genetics,39 (5):179-200
179.Joshi, S., Gupta, V., Aggarwal, R., Ranjekar, P., Brar, D.2000. Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. TAG Theoretical and Applied Genetics,100 (8):1311-1320
180.Kajiyama, T,. Miyahara, Y., Kricka, L.J., Wilding, P., Graves, D.J., Surrey, S., Fortina, P.2003. Genotyping on a thermal gradient DNA chip. Genome research,13 (3):467-475
181.Kardolus, J.P., Eck, H.J., Berg, R.G.1998. The potential of AFLPs in biosystematics:A first application inSolanum taxonomy (Solanaceae). Plant Systematics and Evolution,210(1):87-103
182.Kato, S., Kosaka, H., Hara, S.1928. On the affinity of rice varieties as shown by fertility of hybrid plants. Bulletin of Sciences of Faculty of Agriculture, Fukuoka, Japan,3:132-147
183.Kaundun, S., Matsumoto, S.2003. Development of CAPS markers based on three key genes of the phenylpropanoid pathway in Tea, Camellia sinensis (L.) O. Kuntze, and differentiation between assamica and sinensis varieties. TAG Theoretical and Applied Genetics,106 (3):375-383
184.Konieczny, A., Ausubel, F.M.1993. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. The Plant Journal,4 (2):403-410
185.Konishi, S., Izawa, T., Lin, S.Y., Ebana, K., Fukuta, Y., Sasaki, T, Yano, M.2006. An SNP caused loss of seed shattering during rice domestication. Science,312 (5778):1392-1396
186.Kuroda, Y., Tomooka, N., Kaga, A., Wanigadeva, S.M., Vaughan, D.A.2009. Genetic diversity of wild soybean (Glycine soja Sieb. Et Zucc.) and Japanese cultivated soybeans [G. max (L.) Merr.] based on microsatellite (SSR) analysis and the selection of a core collection. Genetic Resources and Crop Evolution,56 (8):1045-1055
187.Lee, G.A., Koh, H.J., Chung, H.K., Dixit, A., Chung, J.W., Ma, K.H., Lee, S.Y., Lee, J.R., Lee, G.S., Gwag, J.G.2009. Development of SNP-based CAPS and dCAPS markers in eight different genes involved in starch biosynthesis in rice. Molecular Breeding,24 (1):93-101
188.Li, C, Pan, D.J., Mao, X.X., Tu, C.Y., Zhou, H.Q., Fan, Z.L., Li, X.F.2006. The genetic diversity of gaozhou wild rice analyzed by SSR. Chinese Science Bulletin,51 (5):562-572
189.Li, J.M., Thomson, M., McCouch, S.R.2004. Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics,168 (4):2187-2195
19O.Li, R.H., Jiang, T.B., Xu, C.G., H, L.X., Wang, X.K.2000. Relationship between morphological and genetic differentiation in rice(Oryza sativa L.). Euphytica,114:1-8
191.Li, Y.B., Fan, C.C., Xing, Y.Z., Jiang, Y.H., Luo, L.J., Sun, L., Shao, D., Xu, C.J., Li, X.H., Xiao, J.H., He, Y.Q., Zhang, Q.F.2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nature genetics,43 (12):1266-1269. doi:10.1038/ng.977
192.Liang, F, Xin, X.Y., Hu, Z.J., Xu, J.D., Wei, G, Qian, X.Y., Yang, J.S., He, H.H., Luo, X.J.2011. Genetic analysis and fine mapping of a novel semidominant dwarfing gene LB4D in rice. Journal of integrative plant biology,53 (4):312-323. doi:10.1111/j.1744-7909.2011.01031.x
193.Lin, H.X., Qian, H.R., Zhuang, J.Y., Lu, J., Min, S.K., Xiong, Z.M., Huang, N., Zheng, K.L.1996. RFLP mapping of QTLs for yield and related characters in rice. Theoretical and Applied Genetics, 92:920-927
194.Lin, S.Y., Sasaki, T., Yano, M.1998. Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theoretical and Applied Genetics,96 (8):997-1003
195.Lin, Z.W., Griffith, M.E., Li, X.R., Zhu, Z.F., Tan, L.B., Fu, Y.C., Zhang, W.X., Wang, X.K., Xie, D.X., Sun, C.Q.2007. Origin of seed shattering in rice (Oryza sativa L.). Planta,226 (1):11-20. doi:10.1007/s00425-006-0460-4
196.Lorenzen, L., Boutin, S., Young, N., Specht, J., Shoemaker, R.1995. Soybean pedigree analysis using map-based molecular markers:I. Tracking RFLP markers in cultivars. Crop Science,35 (5): 1326-1336
197.Lu, B.R., Cai, X.X., Jin, X.2009. Efficient indica and japonica rice identification based on the InDel molecular method:Its implication in rice breeding and evolutionary research. Progress in Natural Science,19:1241-1252
198.Lu, H., Redus, M.A., Coburn, J.R., Rutger, J.N., McCOUCH, S.R., Tai, T.H.2005. Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis. Crop Science,45(1):66-76
199.Mackill, D., Zhang, Z., Redona, E., Colowit, P.1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome,39 (5):969-977
200.Mackill, D.J.1995. Classifyingjaponica rice cultivars with RAPD markers. Crop Science,35 (3): 889-894
201.Matsuo, T.M.1990. Great Achievement of Rice Science.(Vol.3 Genetices). Tokyo:Nousangyoson Culture Society,197-203
202.McCouch, S.R., Teytelman, L., Xu, Y.B., Lobos, K.B., Clare, K., Walton, M, Fu, B., Maghirang, R., Li, Z.K., Xing, Y.Z.2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research,9 (6):199-207
203.Messmer, M.M., Melchinger, A.E., Boppenmaier, J., Brunklaus-Jung, E., Herrmann, R.G 1992. Relationships among early European maize inbreds:I. Genetic diversity among flint and dent lines revealed by RFLPs. Crop Science,32 (6):1301-1309
204.Michaels, S.D., Amasino, R.M.2002. A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. The Plant Journal,14 (3):381-385
205.Mohan, M., Nair, S., Bhagwat, A., Krishna, T., Yano, M., Bhatia, C., Sasaki, T.1997. Genome mapping, molecular markers and marker-assisted selection in crop plants. Molecular Breeding,3 (2):87-103
206.Morishima, H., Sano, H.I., Oka, H.I.1992. Evolutionary studies in cultivated rice and its wild relatives. Oxford Surveys in Evolutionary Biology,8:135-184
207.Motoyuki, A., Hitoshi, S., Lin, S.Y., Toshio, Y., Tomonori, T., Asuka, N., Enrique, R.A., Qian, Q., Hidemi, K., Maoto, M.2005. Cytokinin Oxidase Regulates Rice Grain Productio. Science,309 (741):741-745
208.Mumm, R.H., Dudley, J.1994. A classification of 148 US maize inbreds:I. Cluster analysis based on RFLPs. Crop Science,34 (4):842-851
209.Murray, M.G., Thompson, W.F.1980. Rapid isolation of high molecular weight Plant DNA. Nucleic Acids Research,8:4321-4325
210.Nakagahra, M., Akihama, T., Hayashi, K.1975. Genetic variation and geographic-cline of esterase isozymes in native rice varieties. Japanese Journal of Genetics,50 (5):373-382
211.Nakamura, I., Chen, W.B., Sato, Y.I.1991. Analysis of chloroplast DNA from ancient rice seeds. Annual Report of National Institute of Genetics, Japan,2:108-109
212.Nasu, S., Suzuki, J., Ohta, R., Hasegawa, K., Yui, R., Kitazawa, N., Monna, L., Minobe, Y.2002. Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Research,9 (5):163-171
213.Neff, M.M., Neff, J.D., Chory, J., Pepper, A.E.1998. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms:experimental applications in Arabidopsis thaliana genetics. The Plant Journal,14 (3):387-392
214.Ni, J.J., Peter, M., Colowit, David, J., Mackill.2002. Evaluation of Genetic Diversity in Rice Subspecies Using Microsatellite Markers. Crop Science,42:601-607
215.Oka, H.I.1958. Variation and classification of cultivated rice. Indian Journal of Genetics and Plant Breeding,18:79
216.Perez, T., Albornoz, J., Dominguez, A.2002. An evaluation of RAPD fragment reproducibility and nature. Molecular Ecology,7 (10):1347-1357
217.Powell, W., Morgante, M., Andre, C., Hanafey, M., Vogel, J., Tingey, S., Rafalski, A.1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding,2 (3):225-238
218.Pradeep Reddy, M., Sarla, N., Siddiq, E.2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica,128 (1):9-17
219.Qian, Q., He, P., Zheng, X.W., Chen, Y, Zhu, L.H.2000. Genetic analysis of morphological index and its related taxonomic traits for classification of indicaljaponica rice. Science in China Series C: Life Sciences,43 (2):113-119
220.Rao, N.N., Prasad, K., Kumar, P.R., Vijayraghavan, U.2008. Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture. Proceedings of the National Academy of Sciences,105 (9):3646-3651. doi:10.1073/pnas.0709059105
221.Ravi, M., Geethanjali, S., Sameeyafarheen, F., Maheswaran, M.2003. Molecular marker based genetic diversity analysis in rice (Oryza sativa L.) using RAPD and SSR markers. Euphytica,133 (2):243-252
222.Ren, F.G., Lu, B.R., Li, S.Q., Huang, J.Y., Zhu, Y.G 2003. A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theoretical and Applied Genetics,108(1):113-120
223.Roussel, V., Leisova, L., Exbrayat, F., Stehno, Z., Balfourier, F.2005. SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000. TAG Theoretical and Applied Genetics,111 (1):162-170
224.Saini, N., Jain, N., Jain, S., Jain, R.K.2004. Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers. Euphytica,140 (3): 133-146
225.Sano, R., Morishima, H.1992. Indica-Japonica differentiation of rice cultivars viewed from variation in key characters and isozymes with special reference to landraces from the Himalayan hilly areas. Theoretical and Applied Genetics,84:266-274
226.Sano, Y., Sano, R.1990. Variation of the intergenic spacer region of ribosomal DNA in cultivated and wild rice species. Genome,33 (2):209-218
227.Sato, Y.I.1986. The Indica-Japonica differentiation of rice cultivars in Thailand and its neighbouring countries. New Frontiers Breeding Researches. Kasetsart Univ., Bangkok:Proc.5th SABRAO Intern. Congress,185-193
228.Second, G.1982. Origin of the genetic diversity of cultivated rice(Oryza sativa L.)A study of the polymorphism scored at 40 isozyme loci. Japanese Journal of Genetics,57:25-57
229.Shao, G.N., Tang, S.Q., Luo, J., Jiao, GA., Wei, X.J., Tang, A., Wu, J.L., Zhuang, J.Y., Hu, P.S. 2010. Mapping of qGL7-2, a grain length QTL on chromosome 7 of rice. Journal of Genetics and Genomics,37 (8):523-531
230.Shen, Y.J., Jiang, H., Jin, J.P., Zhang, Z.B., Xi, B., He, Y.Y., Wang, G, Wang, C., Qian, L., Li, X., Yu, Q.B., Liu, H.J., Chen, D.H., Gao, J.H., Huang, H., Shi, T.L., Yang, Z.N.2004. Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant physiology, 135 (3):1198-1205. doi:10.1104/pp.103.038463
231.Shomura, A., Izawa, T., Ebana, K., Ebitani, T., Kanegae, H., Konishi, S., Yano, M.2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nature genetics,40 (8):1023-1028. doi:10.1038/ng.169
232.Sjakste, T., Rashal, I., Roder, M.2003. Inheritance of microsatellite alleles in pedigrees of Latvian barley varieties and related European ancestors. Theoretical and Applied Genetics,106 (3):539-549
233.Song, X.J., Huang, W., Shi, M., Zhu, M.Z., Lin, H.X.2007. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nature genetics,39 (5):623-630. doi:10.1038/ng2014
234.Song, Z.P., Xu, X., Wang, B., Chen, J.K., Lu, B.R.2003. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theoretical and Applied Genetics,107 (8): 1492-1499
235.St Martin, S.1982. Effective population size for the soybean improvement program in maturity groups 00 to Ⅳ. Crop Science,22 (1):151-152
236.Stuber, C.W., Lincoln, S.E., Wolff, D., Helentjaris, T., Lander, E.1992. Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers. Genetics,132 (3):823-839
237.Sun, J., Liu, D., Wang, J.Y., Ma, D.R., Tang, L., Gao, H., Xu, Z.J., Chen, W.F.2012. The contribution of intersubspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China. Theoretical and Applied Genetics,125 (6):1149-1157. doi:10.1007/s00122-012-1901-z
238.Sun, J., Qian, Q., Ma, D.R., Xu, Z.J., Liu, D., Du, H.B., Chen, W.F.2013. Introgression and selection shaping the genome and adaptive loci of weedy rice in northern China. The New phytologist,197 (1):290-299. doi:10.1111/nph.12012
239.Tang, T., Shi, S.H.2007. Molecular population genetics of rice domestication. Jouranl of Integrative Plant Biology,49:769-775
240.Tu, M., Lu, B.R., Zhu, Y.Y., Wang, Y.Y.2007. Abundant within-varietal genetic diversity in rice germplasm from Yunnan Province of China revealed by SSR fingerprints. Biochemical Genetics,45 (11-12):789-801
241.Udatsu, T., Fujiwara, H.1993. Application of the discriminant function to sub-species of rice (Oryze sativa) using the shape of motor cell silica body. Ethnobotany,5:107-1116
242.Wang, D.G., Fan, J.B., Siao, C.J., Berno, A., Young, P., Sapolsky, R., Ghandour, G., Perkins, N., Winchester, E., Spencer, J.1998. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science,280 (5366):1077-1082
243.Wang, H.T., Jin, F, Jiang, Y.J., Lin, Q.S., Xu, H., Cheng, L., Xia, Y.J., Liu, C.X., Chen, W.F., Xu, Z.J.2013.Effect of Environment and Genetic Recombination on Subspecies and Economic Trait Differentiation in the F2 and F3 Generation from Indica-Japonica Hybridization.Journal of Integrative Agriculture (in press).
244. Wang, K.J., Takahata, Y.2007. A preliminary comparative evaluation of genetic diversity between Chinese and Japanese wild soybean (Glycine soja) germplasm pools using SSR markers. Genetic Resources and Crop Evolution,54 (1):157-165
245.Wang, X.S., Zhao, X.Q., Zhu, J., Wu, W.R.2005. Genome-wide Investigation of Intron Length Polymorphisms and Their Potential as Molecular Markers in Rice. DNA Research,12:417-427
246.Wang, Z., Yu, C., Liu, X., Liu, S., Yin, C., Liu, L., Lei, J., Jiang, L., Yang, C., Chen, L., Zhai, H., Wan, J.2012. Identification of Indica rice chromosome segments for the improvement of Japonica inbreds and hybrids. Theoretical and Applied Genetics,124 (7):1351-1364. doi:10.1007/s00122-012-1792-z
247.Wang, Z.Y., Tanksley, S.D.1989. Restriction fragment length polymorphism in Oryza sativa L. Genome,32 (6):1113-1118
248.Welsh, J., Petersen, C., McClelland, M.1991. Polymorphisms generated by arbitrarily primed PCR in the mouse:application to strain identification and genetic mapping. Nucleic Acids Research,19 (2):303-306
249.Weng, J., Gu, S., Wan, X., Gao, H., Guo, T., Su, N., Lei, C., Zhang, X., Cheng, Z., Guo, X., Wang, J., Jiang, L., Zhai, H., Wan, J.2008. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell research,18 (12):1199-1209. doi:10.1038/cr.2008.307
250.Williams, J.G, Kubelik, A.R., Livak, K.J., Rafalski, J.A., Tingey, S.V.1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research,18 (22): 6531-6535
251.Xie, H., Guan, R.X., Chang, R.Z., Qiu, L.J.2005. Genetic diversity of Chinese summer soybean germplasm revealed by SSR markers. Chinese Science Bulletin,50 (6):526-535
252.Xie, X., Song, M.-H., Jin, F., Ahn, S.-N., Suh, J.-P., Hwang, H.-G, McCouch, S.2006. Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. TAG Theoretical and Applied Genetics,113 (5):885-894
253.Xiong, Z.Y., Zhang, S.J., Wang, Y.Y., Brian, V., Ford-Lioyd, Tu, M., Jin, X., Wu, Y., Yan, H.X., Yang, X., Liu, P., Lu, B.R.2010. Differentiation and distribution of indica and japonica rice varieties along the altitude gradients in Yunnan Province of China as revealed by InDel molecular markers. Genetic Resources and Crop Evolution,57:891-902
254.Xu, H., Liu, H.G, Yang, L., Zhu, C.J., Wang, J.Y., Yang, Q.H., Xu, Z.J., Zheng, J.K.2007. Subspeices characteristics in filial generation of cross between indica and japonica rice under different environments. Frontiers of Agriculture in China,1(3):281-288
255.Xu, H., Liu, H.G, Zhu, C.J., Yang, L., Guo, Y.H., Wang, J.Y., Yang, Q.H., Xu, Z.J., Zheng, J.K., Chen, W.F.2008. Effect of ecological environments on subspecies characteristics and economic traits in filial generations of cross between indica and japonica rice. Frontiers of Agriculture in China,2 (1):23-29
256.Xu, Y.B., Ishii, T., McCouch, S.R.2002. Marker-assisted evaluation of germ plasm of resources for plant breeding. Rice science:innovation and impact for livelihood. Beijing:Proceeding of the International Rice Research Conference,213-219
257.Xue, W.Y., Xing, Y.Z., Weng, X.Y., Zhao, Y., Tang, W.J., Wang, L., Zhou, H.J., Yu, S.B., Xu, C.G., Li, X.H., Zhang, Q.F.2008. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nature genetics,40 (6):761-767
258.Yamamoto, T., Koboki, Y., Lin, S.Y., Sasaki, T., Yano, M.1998. Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theoretical and Applied Genetics,97:37-44
259.Yamamoto, T., Lin, H.X., Sasaki, T., Yano, M.2000. Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny. Genetics,154 (2):885-891
260.Yamanaka, S., Nakamura, I., Watanabe, K., Sato, Y.-I.2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. TAG Theoretical and Applied Genetics,108 (7):1200-1204
261.Yang, G.P., Maroof, M.S., Xu, C.G., Zhang, Q.F., Biyashev, R.1994. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Molecular and General Genetics MGG,245 (2):187-194
262.Yu, B.L., Huang, Z.F., Zhou, W.J., Zhang, W.J.2001. The creation of 1H chromosome-specific CAPs and ASA markers of barley]. Yi chuan xue bao= Acta genetica Sinica,28 (6):550
263.Yu, G.Q., Bao, Y., Shi, C.H., Dong, C.Q., Ge, S.2005. Genetic diversity and population differentiation of Liaoning weedy rice detected by RAPD and SSR markers. Biochemical Genetics, 43 (5):261-270
264.Yu, L.X., Nguyen, H.T.1994. Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). TAG Theoretical and Applied Genetics,87 (6):668-672
265.Zabean, M.1994. The abstract of molecular biology symposium. Amsterdam, The Netherlands: 1844
266.Zabeau, M., Vos, P.1993. Selective restriction fragment amplification:a general method for DNA fingerprinting. EP Patent 0,534,858,
267.Zeder, M.A., Emshwiller, E., Smith, B.D., Bradley, D.G.2006. Documenting domestication:the intersection of genetics and archaeology. Trends in genetics:TIG,22 (3):139-155. doi:10.1016/j.tig.2006.01.007
268.Zhang, B.S., Tian, F., Tan, L.B., Xie, D.X., Sun, C.Q.2011a. Characterization of a novel high-tillering dwarf 3 mutant in rice. Journal of Genetics and Genomics,38 (9):411-418. doi:10.1016/j.jgg.2011.08.002
269.Zhang, J.W., Feng, Q., Jin, C.Q., Qiu, D.Y., Zhang, L.D., Xie, K.B., Yuan, D.J., Han, B., Zhang, Q.F., Wang, S.P.2005. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. The Plant Journal,42 (5):772-780
270.Zhang, P., Li, J.Q., Li, X.L., Liu, X.D., Zhao, X.J., Lu, Y.G.2011b. Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers. PloS one,6 (12): 411-418. doi:10.1371/journal.pone.0027565
271.Zhang, Q.E., Saghai-Maroof, M.A., Lu, T.Y., Shen, B.Z.1992. Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis. Theoretical and Applied Genetics,83: 495-499
272.Zhang, Q.F., Gao, Y.J., Yang, S.H., Ragab, R.A., Saghai Maroof, M.A., Li, Z.B.1994. A diallel analysis of heterosis in elite hybrid rice based in RFLPs and microsatellites. Theoretical and Applied Genetics,89:185-192
273.Zhao, X.Q., Yang, L., Zheng, Y, Xu, Z.H., Wu, W.R.2009. Subspecies-specific intron length polymorphism markers reveal clear genetic differentiation in common wild rice (Oryza rufipogon L.) in relation to the domestication of cultivated rice (O. sativa L.). Journal of Genetics and Genomics,36 (7):435-442
274.Zhou, L.Q., Wang, Y.P., Li, S.G.2006. Genetic Analysis and Physical Mapping of Lk-4 (t), a Major Gene Controlling Grain Length in Rice, with a BC2 F2 Population. Acta Genetica Sinica,33 (1): 72-79
275.Zietkiewicz, E., Rafalski, A., Labuda, D.1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics,20 (2):176-183