软刺裸裂尻鱼(Schizopygopsis malacanthus)三个亚种的分子系统发育研究
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摘要
软刺裸裂尻鱼(Schizopygopsis malacanthus)隶属于裸裂尻鱼属,裂腹鱼亚科,属喜冷性鱼类,多生活在水流清澈的峡谷河流的上段或高山溪流中,以藻类或水生昆虫为食物,生长速度缓慢。软刺裸裂尻鱼有软刺裸裂尻鱼(Schizopygopsis malacanthus malacanthus),大渡裸裂尻鱼(Schizopygopsis malacanthus chengi)和宝兴裸裂尻鱼(Schizopygopsis malacanthus baoxingensis)三个亚种。软刺裸裂尻鱼分布在金沙江水系和雅砻江水系,大渡裸裂尻鱼分布在大渡河的中上游,宝兴裸裂尻鱼分布在青衣江水系的宝兴河。
     2003—2005年,分别从金沙江和雅砻江采集软刺裸裂尻鱼,从大渡河采集大渡裸裂尻鱼,从宝兴河东河的宝兴裸裂尻鱼,提取了总DNA,分别扩增了线粒体DNA控制区序列和细胞色素b基因。依据控制区序列和细胞色素b基因,并通过与裸裂尻鱼属其他种类的比较,对软刺裸裂尻鱼三个亚种的系统发育关系进行了分析。结果表明,宝兴裸裂尻鱼和大渡裸裂尻鱼间的遗传距离很近,而其与软刺裸裂尻鱼的遗传距离较远,甚至接近或大于软刺裸裂尻鱼与裸裂尻鱼属中其他一些种类间的遗传距离。依据线粒体DNA控制区序列和Cyt b基因构建的系统进化树显示,这三个亚种没有聚成一个单系群,其中,软刺裸裂尻鱼聚在一枝,而大渡裸裂尻鱼和宝兴裸裂尻鱼聚在了另一枝。因此,依据分子系统发育分析,大渡裸裂尻鱼和宝兴裸裂尻鱼不适合作为软刺裸裂尻鱼的亚种,可以将大渡裸裂尻鱼从软刺裸裂尻鱼中划分出来作为一个独立的种,并将宝兴裸裂尻鱼作为该种的亚种。
Schizopygopsis malacanthus belongs to the genus Schizopygopsis, subfamily Schizothoracinae. There are three subspecies of this species, S. malacanthus malacanthus Herzenstein, 1891, S. m. chengi (Fang), 1936, and S. m. baoxingensis Fu, Ding et Ye, 1994. They are distributed in cool and cold water in high mountain rivers, streams and lakes in upper reaches of the Yangtze River, and feed on insects and algae. These three subspecies have many common and overlapping morphological characters. However, they still have some obvious differences in morphology. A phylogenetic analysis of these three subspecies is necessary to test whether classification based on morphological characters is corroborated. It can also help determine the origin of S. m. baoxingensis, which has a very limited distribution range.
     In 2003-2005, Schizopygopsis malacanthus malacanthus were collected from the Litang River, a tributary of the Yalong River, in Litang County, and from the upper reaches of the Shuiluo River, a tributary of the Jinsha River, in Litang and Daocheng Counties; S. m. chengi were collected from Rangtang region of the Dadu River; S. m. baoxingensis were collected from the East River, a tributary of the Baoxing River located in upper reaches of the Qingyi River. Phylogenetic relationships of the three subspecies were investigated based on the mitochondrial DNA control region and the cytochrome b gene. Phylogenetic analysis indicated that the three subspecies did not cluster as one monophyletic group; S. m. malacanthus clustered into one clade, while S. m. chengi and S. m. baoxingensis clustered into another. Genetic distances between S. m. malacanthus and the other two subspecies were either very close to or larger than those between S. m. malacanthus and some other species of Schizopygopsis. There was very small genetic distance between S. m. chengi and S. m. baoxingensis. The results suggest S. m. chengi should be split from S. malacanthus into a separate species, Schizopygopsis chengi (Fang); S. m. baoxingensis should be regarded as a subspecies, S. c. baoxingensis (Fu, Ding et Ye), of Schizopygopsis chengi.
引文
1. Brian S Arbogast, 1999, Mitochondrial DNA phylogeography of the New World flying squirrels(Glaucomys): Implications for Pleistocene biogeography. Journal of Mammalogy, 80(1):142-155
    2. Brown W M, 1983. Evolution of animal mitochondrial DNAs.In: NeiM, Koehned R K. Evolution of genes and proteins. Sunderland MA.Sinauer,62-88.
    3. Brown W M,Prager E M,Wang A,etal. 1982 . Mitochondriai DNA sequences of primates:Tempoandmod eof evolution, J Mol Evol, 18:225-239.
    4. Bruyn M D,Wilson J C, Mather P B , 2004 . Reconciling geography and genealogy:phylogeegraphy of giant freshwater prawns from the Lake Carpentaria region, Molecular Ecology, 13:3515-3526
    5. CasselA, Tammaru T, 2003. Allozyme variability incentral,peripheral and isolated populations of the scarce heath (Coenonymphahero: Lepidoptera, Nymphalidae): implications for conservation , Conservation Genetics, 4:83-93.
    6. Costello A B,Down T E,Pollard S M,etal, 2003. The influence of history and contemporary stream hydrology on the evolution of genetic diversity within species: an examination of microsatellite DNA variation in bull trout,Salvel inusconfluentus (Pisces: Salmonidae) , Evolution, 57:328-344.
    7. Falk T M, Teugels G G, Abban E K,etal, 2003. Phylogeographic patterns in populations of the black-chinned tilapia complex (Telcostei, Cichlidae) from coastal areas in West Africa: support for the refuge zone theory, Molecular Phylogenetics and Evolution, 27:81 -92.
    8. Fang P W, 1936. On some schizothoracid fishes from western China preserved in the National Research Institute of Biology, Academia Sinica. Sinensia 7:421-458.
    9. Geller J B, 1993. Liter specific and intrapopulation variation in mitochondrial ribosomal DNA sequences of Mytilusspp (Bivalvat Mollusca) . Mol Mar Biol Biotech, 2:44-55.
    10. Grunwald C,Stabile J,Waldman J R, 2002.Population genetics of shortnoses turgeon Acipenser brevirostrum based on mitochondrial DNA control region sequences.Molecular Ecology, 11:1885-1898.
    11. Gyllensten U,Wharton D,Josefsson A, 1991. Paternal inheritance of mitochondrial DNA in mice. Nature, 352(6332): 255-257.
    12. Hillis D M, Moritz C, Mable B K. 1996. Molecular Systematics, 2nd ed. Sunderland, MA: Sinauer.
    13. John W Bickham,Thomas R Loughlin, Donald G Calkins,etal, 1998.Genetic variability and population decline in Steller sea lions from the Gulf of AlaskaJournal of Mammalogy,9(4):1390-1395.
    14. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
    15. Koehlar C M,Lindberg G L,Brown D R,etal , 1991 . Replacement of bovine mitochondriaiDNA by sequence variant within one generation, Genetics, 129:247-255.
    16. Kotlik P, Berrebi P. 2002. Genetic subdivision and biogeography of the Danubian phylogenetic analysis of mitochondrial DNA variation. Molecular Phylogenetics and Evolution 24:10-18.
    17. Kotlik P, Tsigenopoulos C, Rab P,etal, 2002.Two new Barbus species from the Danube Basin, with redescription of B.petenyi (Teleostei: Cyprinidae), Folia Zool, 51,227-240.
    18. Kumar S, Tamura K, Nei M. 2004. MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5:150-163.
    19. Lee W J, Conroy J, Howell W H. 1995,Structure and evolution of teleost mitochondrial control regions. J Mol Evol, ,41: 54-66.
    20. Li W H, 1981. A simulation study of Nei and Li's model for estimating DNA divergence from restriction enzyme maps. J Mol Evol,17: 251-255.
    21. Liu H, Tzeng C-S, Teng H-Y. 2002. Sequence variations in the mitochondrial DNA control region and their implications for the phylogeny of the Cypriniformes. Canadian Journal of Zoology 80:569-581.
    22. Lockhart P J, Penny D, Meyer A, 1995. Testing the phylogeny of swordtail fishes using split decomposition and spectral analysis. J Mol Evol, 41: 666-674.
    23. Meland S,Johansen S,Johansen T,etal, 1991 . Rapid disappearance of one parental mitochondrial genotype alfter isogamous mating in the myxomycete Physarum polycephalum, Curt Genet, 19:55-60.
    24. Mesquita N,Carvalho G,Shaw P,etal, 2001. River basin-related genetic structuring in an endangered fish species,Chondrostoma lusitanicum,based on mtDNA sequencing and RFLP analysis , Heredity, 86:253 - 264.
    25. Meyer A. 1993. Evolution of mitochondrial DNA in fishes. In: Hochachka P W, Mommsen T P, editors. Molecular biology frontiers, biochemistry and molecular biology of fishes. Amsterdam: Elsevier Science Publishers, 1-38.
    26. Minckley W L, Hendrickson D A, Bond C A. 1986. Geography of western North American freshwater fishes: Description and relationships to intracontinental tectonism. In: Hocutt CH, Wiley EO, editors Zoogeography of North American freshwater fishes. New York: John Wiley and Sons. 519-613.
    27. Miyake K, Tachida H, Oshima Y, etal, 2001 .Genetic variation of the cytochrome b gene in the rosy bitterling, Rhodeusocellatus (Cyprinidae) in Japan , Ichthyol Res, 48:105 - 110.
    28. Mojica C L,Meyei A,Barlow G W, 1997. Phylogenetic relationships of the genus Brachyrhaphis (Poeciliidae) inferred from partial mitochondrial DNA sequence, Copeia, (2):298-305.
    29. Monica Medina, Timothy M Collins, Patrick J Walsh, 2001. mtDNA ribosomal gene phylogency of sea hares in the genus Aplysia (gastropoda,opisthobrancia,Anaspidea): Implications for comparative neurobiology. Systematic Biology, 50(5): 676-688.
    30. Moritz C , 1991 . Evolutionary dynamics of mitochondrialDNA duplications in parthenogenetic geckos,Heteronotiabinoei, Genetics, 129:221 -230.
    31. Moritz C. 1994 . Defining evolutionarily significant units for conservation, Trends in Ecology and Evolution, 9: 373-375
    32. Murakami M,Matsuba C,Fujitani H, 2001. The maternal origins of the triploid ginbuna (Carassius auratus langsdorfi): phylogenetic relationships within the C,auratus taxa by partial mitochondrial D-Loop sequencing , Genes Genet Syst, 76:25-32.
    33. Nedbal M A,Flynn J J, 1998. Do the combined effects of the asymmetric process of replication and DNA damage from oxygen radicals produce a mutation rate signature in the mitochondrial genome? Mol Biol Evol, 15: 219-223
    34. Ovenden J R, Lloyd J,Newman S J.2002.Spatial genetic subdivision between northern Australian and southeast Asian populations of Pristipomoides multidens:a tropical marine reef fish species. FisheriesResearcn, 59:57-69
    35. Perdices A,Cunha C,Coelho M M, 2004.Phylogenetic structure of Zacco platypus (Teleostei: Cyprinidae) populations on the upper and middle Chang Jiang(=Yangtze) drainage inferred from cytochrome b sequences, Molecular phylogenetics Evolution, 31:192 - 203.
    36. Pfrender M E,Hicks J,Lynch M, 2004. Biogeographic patterns and current distribution of molecular-genetic variation among populations of speckled dace, Rhinichthys osculus (Girard), Molecular Phylogenetic sand Evolution, 30:490-502.
    37. Ravaoarimanana I B, Tiedemann R, Montagnon D.etal. 2004. Molecular and cytogenetic evidence for cryptic speciation within a rare endemic Malagasy lemur, the Northern Sportive Lemur (Lepilemur septentrionalis) , Molecular Phylogenetios and Evolution, 31: 440-448.
    38. Robin L Westlake, Gregory Mo.Corry Crowe, 2002. M acrogeographic structure and patterns of genetic diversity in harbor seals(Phoca vitulina)from Alaska to JapanJournal of Mammalogy, 83(4):1111 -1126.
    39. Roy G Danzmann, Raymond P Morgan, Matthew W Joneses, 1998. A major sextet of mitochondrial DNA phylogenetic assemblages extant in eastern North American brook trout(Salvelinus fontinalis):Distribution. Canadian Journal of Zoology,76(7):1300-1318
    40. Saccone C, Attimonelli M, Sbisa E. 1987. Structural elements highly preserved during the evolution of the Dloop containing region in vertebrate mitochondrial DNA. Journal of Molecular Evolution, 26:205-211.
    41. Sambrook J, Russell D W. 2002. Molecular cloning: a laboratory manual, 3rd ed. Beijing, China: Science Press of China. 463-618.
    42. Sergio L Pereira, Allan J Baker, Anita W ajntal,etal.2002. Combined nuclear and mitochondrial DNA sequences resolve generic relationships within the Cracidae(Galliformes,Aves). Systematic Biology, 51(6):946-958.
    43. Takahashi, H, K Takata, 2000.Multiple lineages of the mitochondrial DNA introgression from Pungitius pungitius(L.)to Pungitius tymensis(Nikolsky). Canadian Journal of Fisher ies and Aquatic Sciences, 57(9): 1814-1833.
    44. Thomas W K, 1986. Mitochondrial DNAanalysis of Pacific salmonid evolution, Can J Zool, 64:1058-1064.
    45. Thompson J D, Gibson T J, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24:4876-4882.
    46. Tsigenopoulos CS, Berrebi P. 2000. Molecular phylogeny of North Mediterranean freshwater barbs (Genus Barbus: Cyprinidae) inferred from cytochrome b sequences: biogeographic and systematic implications. Molecular Phylogenetics and Evolution, 14:165-179.
    47. Turgeon J,Bernatchez L, 2001. Clinal variation at microsatellite loci reveals historical secondary intergradation between glacial races of Coregonus artedi(Teleostei:Coregoninae) , Evolution, 55,2274-2286.
    48. Vaughn K C,Debonte L R,Wilson K G, 1980.Organelle alteration as mechanism formatermal inheritance, Science, 208:196- 197.
    49. Verheyen E, Salzburger W,Snceks J, etal, 2003 . Origin of the Superflock of Cichlid Fishes from Lake Victoria, East Africa, Science, 300(11):325-329.
    50. Ward R D,Payne P, 1994. Appraisal of molecular genetic technique in fisheries.Rev Fish Biol Fish, 4:3000-3257.
    51. Waters J M, Roy M S, 2003. Marine biogeography of southern Australia: phylogcographical structure in a temperate sea -star , Journal of Biogeography, 30:1787-1796.
    52. Waters J M, Craw D, Youngson J H,etal, 2001. Genes meet geology: fish phylogeographic pattern reflects ancient,rather than modern,drainage connections, Evolution, 55:1844- 1851.
    53. Webb, S. A. 2002. Molecular systematics of the genus Allodontichthys (Cyprinodontiformes: Goodeidae). Reviews in Fish Biology and Fisheries 12:193-205.
    54. Wilson G M,Thomas W K, Beckenbach A T, 1985. Inrtra- and inter- specific mitochondrial DNA sequences divergence in salmo: rainbow, steelhead, and cut throat trouts, Can J Zool, 63:2088-094.
    55. Wolstenhome D R, Clary D O, 1985. Sequence evolution of Drosophila mitochondrial DNA, Genetics, 190:725-744.
    56. Xiao W, Zhang Y, Liu H. 2001. Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy,biogeography, and coevolution of a special group restricted in East Asia. Molecular Phylogenetics and Evolution, 18:163-173.
    57. Zardoya R, MeyeaA, 1996. Phylogenetic Performance of mitochondrial protein-coding genes in resolving relationships among vertebrates, Mol Biol Evol, 13(7):933-942.
    58. Zhang S M,Wang D Q,Zhang Y P, 2003. Mitochondrial DNA variation,effective female population size and population history of the endangered Chinese sturgeon,Acipenser sinensis, Conservation Genetics, 4:673-683.
    59.曹文宣 邓中麟,1962.四川西部及其邻近地区的裂腹鱼类.水生生物学集刊,2:27-53.
    60.曹萤,夏德全.尼罗非鲫和奥利亚非鲫线粒体DNA遗传差异的研究.水产学报,1997,21(4):360-365.
    61.陈关君,陈彩云,王尔中,1984。鲤鱼、鲫鱼肌细胞线粒体DNA的限制性内切酶酶切图谱比较,遗传学报,11(2):141-146.
    62.戴建华,殷文莉,宋平等,1994。鳗鲡线粒体DNA的研究,遗传,16(5):6-9.
    63.丁瑞华,1994。四川鱼类志.四川科技出版社
    64.苟德明,王智新,1996。动物线粒体DNA特性及其多态性研究进展,遗传育种.黄牛杂志,22(4):7-10.
    65.何德奎,陈毅锋,陈宜瑜,陈自明;2003。特化特级裂腹鱼类的分子系统发育与青藏高原隆起,科学通报,48(22):2354-2362.
    66.胡文革,段子渊,王金富,盛金良,马润林,2004。新疆3种雅罗鱼线粒体DNA控制区序列的差异和系统进化关系.遗传学报,31(9):970-975.
    67.胡文革,王金富,,2001。动物线粒体DNA多态性研究及其在鱼类群体遗传结构上的应用.石河子大学学报5(3):253-258.
    68.胡文革,王金富,盛金良,段子渊,马润林,2003。新疆三种雅罗鱼属鱼类mtDNAD-loop多态性及起源分化分析.遗传,25(4):414-418.
    69.黄原,1998。分子系统学原理、方法及应用,北京:中国农业出版社.
    70.贾永红,史宪伟,简承松等,1999。贵州四个山羊品种mtDNA多态性及起源分化,动物 学研究,20(2):88~92.
    71.兰宏,施立明,1993。麂属动物线粒体DNA多态性及其遗传分化,中国科学(B辑),23(5):489~497.
    72.兰宏,熊习昆,林世英等,1993。云南黄牛和大额牛的mtDNA多态性研究,遗传学报,20(5):419~425.
    73.乐佩琦,2000。中国动物志硬骨鱼纲鲤形目(下卷).北京:科学出版社661
    74.李明,王小明,1997。分子系统学及其应用.大自然探索,16(1):48~51.
    75.李庆伟,田春宇,李爽等,2001。鹰科四种鸟类线粒体DNA的差异和分子进化关系的研究.遗传,23(6):529~534.
    76.李祥龙,刘金福,1998。动物线粒体DNA的RFLP在家养动物遗传多样性研究中的应用.河北农业技术师范学院学报,12(1):55~60.
    77.刘焕章,2002。鱼类线粒体DNA控制区的结构和进化:以鳑鮍鱼类为例。自然科学进展,12(3):266~270.
    78.刘萍,2000。DNA标记技术在海洋生物种质资源开发和保护中的应用,中国水产科学,7(2):86~89.
    79.吕宝忠,1993。分子进化树的构建,动物学研究,14(2):186~193.
    80.吕国庆,李思发,1998。鱼类线粒体DNA动态研究和应用进展,中国水产科学,5(3):94~103.
    81.欧阳建华,黄建安,2002。PCRSSCP技术的研究进展.上海畜牧兽医通讯,4:10~11.
    82.邵红光,严健,庚镇城等,1999。新疆荒漠束颈蝗属及其近、远缘种的线粒体DNAPFLP与系统进化,昆虫学报,42(2):132~139.
    83.申宗候,李凌云,王鄂生等,1993。武昌鱼肝线粒体DNA限制性内切酶酶解图谱与12SrRNA基因的初步定位,水生生物学报,17(2):174~180.
    84.史宪伟,李清,曾凡同等,1998。云南鹅不同地理群体线粒体DNA多态性研究,云南农业大学学报,13(3):311~314.
    85.史宪伟,曾凡同,邱祥聘等,1998。中国主要鹅品种的线粒体DNA多态性与起源分化研究,遗传学报,25(6):499~507.
    86.宋昭彬,2006.世界自然基金会(WWF)中国物种保护小额基金项目总结报告:山区河流水电站梯级开发对鱼类多样性的影响及对策——以宝兴东河和西河为例.四川大 学生命科学学院。
    87.童金苟,吴清江,2001。三个鲤品种线粒体基因片段保守性,水生生物学报,25(1):54~60.
    88.王存芳,曾勇庆,杜立新等,2001。线粒体DNA(mtDNA)的研究进展,动物科学与动物医学,18(1):16~18.
    89.王存芳,曾勇庆,杜立新等,2001。猪线粒DNA(mtDNA)及其在遗传育种中的应用.黑龙江畜牧兽医,(9):5~7.
    90.王钢峰,吴乃虎,1991。鲤鱼线粒体URFA6L基因和tRNA LYS基因的结构分析,中国科学(B辑),6:609~614.
    91.魏彩虹,1997。动物mtDNA遗传研究进展及在育种上的应用。甘肃畜牧兽医,1:23~25.
    92.吴乃虎,王钢峰,阎景智等,1991。草鱼和鲤鱼线粒体DNA的分离纯化及其COI基因的分子克隆,动物学报,37(4):375~381.
    93.夏得全,王文君,1998。动物线粒体DNA研究及在鱼类种群遗传结构中的应用.水产学报,22(4):364~369.
    94.肖武汉,宿兵,吴春花等,1997。一种从鱼类卵巢制备地高辛标记mtDNA探针的简易方法,动物学研究,18(1):58,72,78
    95.肖武汉,张亚平,2000。银鲴自然群体线粒体DNA的遗传分化.水生生物学报,24(1):1~9.
    96.肖武汉,张亚平,2000。鱼类线粒体DNA的遗传与进化,水生生物学报,24(4):384~391.
    97.邢连喜,1999。四种白蚁的线粒体DNA限制性片段长度多态性研究.昆虫分类学报,21(3):181~185.
    98.徐庆刚,花保祯,2001。线粒体DNA在昆虫系统学研究中的应用,西北农林科技大学学报(自然科学版),29(增):79~83.
    99.殷文莉,戴建花,杨代淑等,1998。鳜及大眼鳜线粒体DNA比较研究.水产生物学报,22(3):257~264.
    100.于宁,郑冒琳,王行亮等,1996,雪豹线粒体DNA(mtDNA)研究及其分类地位的探讨,兽类学报,16(2):105~108.
    101.张方,米志勇,1998。动物线粒体DNA的分子生物学研究进展,生物工程进展, 18(3):25-31.
    102.张亚平,1996。从DNA序列到物种树动物学研究,17(3):247~252
    103.张宇红.2002。PCR SSCP分析技术的研究进展及应用前景.中国优生与遗传杂志,10(5):126~127.
    104.赵凯,李军祥,张亚平,2001。青海湖裸鲤mtDNA遗传多样性的初步研究.遗传,23(5):445~448
    105.郑冰蓉涨亚平,2002。鲤属鱼类mtDNA控制区序列的变异性分析.水产学报
    106.郑冰蓉,张亚平,昝瑞光,2001。洱海四种鲤鱼线粒体DNA遗传相似性的初步研究.遗传,23(6):544~546.
    107.郑光明,朱新平,张跃,1999.鱼类种质鉴定技术与渔业管理,中国水产科学,6(2):108-111.

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