油菜抗逆相关基因的鉴定和功能研究
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摘要
油菜是重要的油料作物,种子的含油量占其干重的35%-45%。菜油也是非常好的食用油,含有丰富的脂肪酸。菜油也是重要的工业原料,是我国发展生物柴油的理想的原料来源之一。因此大力发展油菜,提高油菜含油量,不仅能为我国能源安全战略作出重要贡献,还将有助于保障我国的粮食安全,促进农民增收,具有十分重要的战略意义。然而,油菜经常受到高盐、干旱、低温和营养缺乏(如低磷、低钾)等不良非生物胁迫的严重破坏,造成油菜产量严重下降。通过基因工程手段将一些具有抗逆功能的基因导入植物基因组进而获得抗逆新品种,这为传统育种模式的改革带来了新的契机。
     与拟南芥、水稻等传统模式植物相比,油菜中抗逆基因的鉴定和抗逆机制的研究还比较少。因此,筛选和鉴定油菜中与抗逆相关的基因,分析揭示其抗逆分子机制,可以为通过基因工程手段来改良油菜抗逆性提供了新的科学依据。本研究采用Macroarray技术,从油菜cDNA文库中筛选了参与高盐、干旱胁迫应答的基因,并对一些感兴趣的目标基因进行了深入的研究。主要结果如下:
     1.通过Macroarray技术从油菜cDNA文库中筛选鉴定参与高盐、干旱胁迫应答的基因
     采用Macroarray技术,从油菜cDNA文库中共筛选得到313个参与盐胁迫应答的基因(172个受到高盐胁迫的诱导,141受到高盐胁迫的抑制表达);477个参与干旱胁迫应答的基因(288个受到干旱胁迫的诱导,189个受到干旱胁迫的抑制表达);154个基因受到高盐和干旱两种胁迫的双重诱导;104个基因受到高盐和干旱两种胁迫的抑制表达。这也说明高盐胁迫和干旱胁迫之间存在着共同的调控系统或信号交叉。
     2.高盐干旱胁迫应答基因的表达模式分析
     从上述胁迫诱导表达的候选基因中选取了13个基因做进一步的研究。这些基因编码的蛋白分属于六个蛋白家族:蛋白激酶家族(MAPKKK和CIPK)、金属硫蛋白家族、生长素应答或抑制蛋白家族、脂类转运蛋白、直接和胁迫相关的蛋白、代谢酶类。实时定量RT-PCR分析了这13个基因在盐胁迫、干旱胁迫的表达模式,同时也分析了6个基因在ABA处理下的表达模式。结果如下:13个基因中,有7个基因的表达受到盐胁迫的诱导;12个基因的表达受到甘露醇(模拟干旱胁迫)的诱导,其中包括6个受盐胁迫诱导的基因;进一步的研究揭示5个受干旱胁迫诱导的基因也受ABA的显著诱导。这些结果进一步表明干旱和高盐胁迫信号、干旱与ABA信号通路之间存在着交叉。组织表达分析结果显示,这13个基因可能在油菜的不同组织器官发育中也发挥着重要的作用。
     3.冷调节基因BnCOR25的表达分析及功能鉴定
     我们从候选的288个干旱诱导的基因中,鉴定了一个新型的编码冷调节蛋白的基因,该基因编码蛋白的分子量为25KD,因此我们将其命名为BnCOR25 (GeneBank号为HM187577)。实时定量RT-PCR结果显示BnCOR25基因主要在下胚轴、子叶、茎和花中表达,但是在根和叶子中表达量较低。Northern杂交证实BnCOR25基因的表达受到干旱和冷胁迫的显著诱导。研究结果还揭示BnCOR25基因的表达是受ABA信号通路调节的。BnCOR25蛋白主要定位于细胞膜上和细胞质中。过量表达BnCOR25基因增强了裂殖酵母细胞在冷胁迫下的存活率;过量表达BnCOR25的转基因拟南芥增强了对冷胁迫的耐受性。这些结果暗示该基因可能在赋予植物对冷胁迫耐受性中起一定的作用。
     4. BnCIPK6基因的表达鉴定和启动子活性分析
     在154个受干旱和高盐胁迫诱导的候选基因中,其中有一个基因编码的蛋白和拟南芥CIPK蛋白激酶家族的成员CIPK6有很高的同源性,因而被命名为BnCIPK6。BnCIPK6基因的表达受到高盐胁迫、渗透胁迫、低磷胁迫、ABA和BL的显著诱导。组织表达分析结果显示,BnCIPK6基因主要在花中表达,在子叶中适度表达,而在其它组织中表达水平较低。我们分离得到了约850bp长度的BnCIPK6启动子片段,组织化学染色分析揭示12天苗龄的拟南芥小苗,下胚轴和子叶中均有很强的GUS信号,而在其它组织中很弱或者检测不到GUS信号;胁迫处理分析揭示BnCIPK6基因的启动子是受高盐、渗透胁迫、ABA和BL诱导的。
     5. BnCIPK6互作蛋白的筛选及鉴定
     酵母双杂交结果显示BnCIPK6可以与拟南芥的CBL1,CBL2, CBL3和CBL9发生相互作用。将BnCIPK6蛋白作为诱饵蛋白筛选油菜cDNA文库,得到27种与其相互作用蛋白,这些互作蛋白涉及到植物生长发育、代谢及信号转导等多个方面。其中包括两个CBL蛋白,分别与AtCBL1和AtCBL3蛋白同源,我们将和AtCBL1同源性较高的油菜CBL蛋白,命名为BnCBL1, BiFC实验也证明了BnCIPK6和BnCBLl蛋白在体内的相互作用。
     6. BnCIPK6和BnCBL1蛋白的亚细胞定位及BnCIPK、BnCIPK6T182D蛋白的体外磷酸化分析
     亚细胞定位研究显示BnCIPK6蛋白在细胞膜、细胞质及细胞核中均有分布,而BnCBL1蛋白定位于细胞膜上。体外激酶磷酸化分析揭示点突变的BnCIPK6T182D蛋白-BnCIPK6(M),相对BnCIPK6蛋白自磷酸化能力更强,表明182位的苏氨酸残基是蛋白激活的关键位点。
     7. BnCIPK6、BnCIPK6(M)及BnCBL1过量表达转基因拟南芥均显著增强了对盐胁迫、低磷胁迫的耐受性
     为研究BnCIPK6及BnCBLl基因的功能,我们分别构建了BnCIPK6、BnCIPK6(M)及BnCBLl过量表达载体并转化了拟南芥,筛选获得转基因植株。分别选取这些外源基因在拟南芥中表达量较高的纯合株系做表型分析及功能研究。结果显示BnCIPK6、BnCIPK6(M)及BnCBL1转基因拟南芥均显著增强了对盐胁迫、低磷胁迫的耐受性。结果说明BnCBL1-BnCIPK6可能通过功能性的相互作用来参与植物对高盐、低磷胁迫的应答。
     8. BnCIPK6和BnCIPK6(M)的过量表达转基因拟南芥增强了对ABA的敏感性
     我们分析了转基因植株对ABA的应答,结果显示BnCIPK6和BnCIPK6(M)的过量表达转基因拟南芥均增强了对ABA的敏感性,尤其是后者显示出了对ABA的超敏性。ABA相关的Marker基因包括RD29A, ABF3, ABF4在ABA处理后的BnCIPK6(M)的转基因拟南芥中的表达量显著升高。而我们并未观察到过量表达BnCBLl的转基因拟南芥对ABA应答的改变。上述结果表明BnCIPK6参与了对ABA的应答,而BnCBL1没有参与ABA的应答,暗示可能存在和BnCIPK6相互作用的其它CBL蛋白,参与并介导了对ABA的应答。
     9. BnCIPK6(M)的过量表达转基因拟南芥植株对BR应答改变,且提高了对BR合成抑制剂BRZ的敏感性
     BnCIPK6(M)过量表达转基因植株改变了对油菜素内酯(BR)的应答,提高了对BRZ的敏感性。而我们并未观察到BnCIPK6和BnCBLl过量表达转基因拟南芥对BR应答表型的改变。这说明激活形式的BnCIPK6可能参与了BR的信号,同样暗示可能存在和BnCIPK6相互作用的其它CBL蛋白,参与并介导了对BR的应答。
     10.拟南芥cipk6功能缺失突变体减弱了对ABA的应答、对盐胁迫和低磷胁迫更加敏感
     对拟南芥cipk6功能缺失突变体的研究发现,cipk6突变体对盐胁迫和低磷胁迫更加敏感,对ABA的敏感性下降,这也说明AtCIPK6基因参与了对盐、低磷胁迫及ABA的应答。
Brassica napus is an important oilseed plant, which contains oil content, accounting for 35%-45% of its dry weight. Rapeseed oil is also good edible oil that is rich in fatty acids. Rapeseed oil is also an important industrial raw material and is the optimal sourceoffeed for developing biodiesel. Therefore, developing rape and increasing oil content can not only make an important contribution to energy security strategy but also ensure food security and improve farmer income in china. However, Brassica napus often encounters abiotic stresses, such as high salinity, drought, cold and nutrient deficiency (such as P and k limitation), which result in plant growth retardation and reduce agricultural productivity. Transference of stress tolerance genes into plant genome by gene engineering strategies to produce new varieties of stress resistance will bring new chance for reform of conventional breeding.
     Compared with model species such as Arabidopsis and rice, little is known about identification of abiotic stress-related genes and the molecular mechanism in response to abiotic stresses of Brassica napus. Hence, screening and identification of stress-related genes and study the molecular mechanism of stress tolerance could provide us the basis of effective genetic engineering strategies for improving stress tolerance of B. napus. In our study, over 500 genes related to high-salinity and drought stresses were identified from B. napus cDNA libraries using macroarray analysis, and some interested genes were chosen for further expression and functional study. The main results are as follows:
     1. Screening and identification of high-salinity/drought-related genes from B. napus cDNA libraries by macroarray analysis
     In total,313 high-salinity-responsive genes (including 172 up-regulated and 141 down-regulated genes), and 477 drought-responsive genes (including 288 up-regulated and 189 down-regulated genes) were identified by cDNA microarray.154 genes were induced by both high salinity and drought, whereas 104 genes were suppressed by both high salinity and drought, suggesting the existence of a substantial common regulatory system or a cross-talk between high-salinity and drought stresses.
     2. Expression patterns of the 13 stress-induced genes
     13 candidate genes were chosen for further study. These proteins of the 13 genes encoding belong to 6 protein families, including protein kinase (MAPKKK and CIPK), metallothionein proteins, auxin-responsive or-repressed proteins, lipid transfer protein, stress-related proteins and metabolic enzyme. The expression profiles of the 13 genes under salinity or drought stress were analyzed by real-time quantitative RT-PCR.6 genes were selected for analyzing expressions under ABA treatment. The results are as follows:among 13 genes, the expressions of 7 genes were induced by salt stress; 12 of the selected 13 genes were induced to up-express by treatment with 200 mM mannitol, of which 6 genes were induced by high-salinity stress simultaneously; further study revealed that 5 manitol-inducible genes were also induced by ABA, suggesting that a significant cross-talk may occur between drought and high-salinity stress signaling and between drought and ABA responses. Expression patterns of the 13 genes in different tissues/organs of B. napus suggest that these genes may play important roles in tissues/organs development.
     3. Expression analysis and functional identification of cold regulated gene BnCOR25
     Among 288 clones identified to be putative drought-responsive genes, one gene (cDNA) encodes putative novel cold-regulated protein with a calculated molecular mass of 25 kDa, and consequently designated as BnCOR25 (accession number in GenBank:HM 187577). The results of Real time RT-PCR displayed that BnCOR25 was mainly expressed in hypocotyls, cotyledons, stems, and flowers, but its mRNA was found at low levels in roots and leaves. Northern blotting indicated that BnCOR25 expression is significantly induced in roots by osmotic and drought stresses. The data also revealed that BnCOR25 gene expression may be mediated by ABA-dependent pathway. BnCOR25 protein may be chiefly localized on cell plasma membrane and cytoplasm. Overexpression of BnCOR25 in yeast enhanced the cell survival probability under cold stress, and overexpression of BnCOR25 in Arabidopsis enhances plant tolerance to cold stress. These results suggested that the BnCOR25 gene may play an important role in conferring freezing/cold tolerance in plants.
     4. Expression analysis of BnCIPK6 gene and histochemical assay of BnCIPK6 promoter activities
     Among 154 genes identified to be putative induced by both high salinity and drought stress, one gene (cDNA) with deduced amino acid sequence homology to CBL-interacting protein kinases 6, and consequently designated as BnCIPK6, was chosen for further analysis. Transcripts of BnCIPK6 gene were induced by high salinity, osmotic stress, low phosphate, ABA and BL treatment. The results of the RT-PCR showed that BnCIPK6 was mainly expressed in flowers, at moderate level in cotyledons, but its mRNA was found at low levels in other tissues. We isolated the 850bp promoter of BnCIPK6, Histochemical assay revealed that the GUS staining was detected at relatively high level in hypocotyls and cotyledons in 12-day-old seedlings, but weak or no GUS signals in other tissues. The results of stress and hormone treatments revealed that the BnCIPK6 promoter is salt-/osmotic-/ABA-/BL-inducible.
     5. Screening and identification of BnCIPK6-interacting proteins
     Yeast two-hybrid analysis showed that BnCIPK6 interacts strongly and specifically with AtCBL1, AtCBL2, AtCBL3 and AtCBL9. Yeast two-hybrid analysis was performed using the BnCIPK6 as bait to screen the two-hybrid library of Brassica napus cDNAs constructed on the prey vector.27 unique proteins were identified as positive clones. The BnCIPK6-interacting proteins were related to various aspects of plant development, metabolism and signal transduction. The identified proteins included two calcineurin B-like proteins that are homologous to AtCBL1 and AtCBL3, respectively. The protein homologous to AtCBL1, designated as BnCBL1, was chosen for further study. BiFC assays also confirmed BnCIPK6 protein interaction with BnCBLl protein in vivo.
     6. Subcellular localization of BnCIPK6 and BnCBL1 protein and phosphorylation activities of BnCIPK6 and BnCIPK6T182D proteins in vitro
     The results of subcellular localization showed that BnCIPK6:eGFP fusion protein can be observed at the plasma membrane, in the nucleus and cytosol, whereas BnCBL1 is plasma membrane-localized protein. The results of phosphorylation activities in vitro revealed that the BnCIPK6(M) mutant protein exhibited higher autophosphorylation activity, compared with BnCIPK6 protein, suggesting that the 182nd threonine residue in BnCIPK6 could be a critical target site for activation.
     7. Overexpression of the BnCIPK6, BnCIPK6(M) and BnCBL1 in Arabidopsis enhance plant tolerance to salt and low phosphate stress To study the function of BnCIPK6 and BnCBL1, the coding region of the BnCIPK6, BnCIPK6(M) and BnCBL1 were fused to the CaMV 35S promoter and used to transform Arabidopsis plants. Several transgenic plants were obtained by screening and identification. Transgenic lines with higher gene expression were selected for analyzing their phenotypes under various treatment conditions. The results showed that BnCIPK6, BnCIPK6(M) and BnCBL1 transgenic plants all enhance plant tolerance to salt and low phosphate stress. These results suggest that BnCBL1-BnCIPK6 may functionally interact with each other and that are involved in salt and low Pi (LP) stresses response in plant.
     8. BnCIPK6 and BnCIPK6(M) transgenic Arabidopsis were sensitive to abscisic acid (ABA)
     We tested the transgenic lines under ABA treatment. The results showed that overexpression of BnCIPK6 and BnCIPK6(M) increased plant sensitivity to ABA, especially the latter that show hypersensitivity to ABA. The expression of ABA-responsive Marker genes, such asABF3, ABF4 and RD29A, in the BnCIPK6(M) transgenic plants was remarkably higher than that in wild type under ABA treatment although there was no significant difference in expression levels of those genes between the transgenic plants and wild type in absence of ABA. We did not observe the obvious phenotype changes of BnCBL1 transgenic plants in response to ABA, compared to wild type plants. The results showed that BnCIPK6, but not BnCBL1, is involved in ABA response, suggesting that there may be another BnCIPK6 interaction CBL(s) involved in ABA signaling.
     9. BnCIPK6(M) overexpression transgenic plants show altered BR response phenotypes and increase plant sensitivity to BRZ
     The results revealed that overexpression of the constitutively active BnCIPK6 in Arabidopsis alters plants response to BR and increases plant sensitivity to BRZ. However, we did not observe the obvious phenotype changes of BnCBLl and BnCIPK6 transgenic plants in response to BR. The results revealed that the constitutively active BnCIPK6, which has higher kinase activity, may be involved in BR signaling pathway, suggesting that there may be another BnCIPK6 interaction CBL(s) involved inBR signaling.
     10. Arabidopsis cipk6 loss of function mutant shows less ABA sensitivity than the WT, but is more sensitive to salt and low phosphate stresses
     The studies on Arabidopsis cipk6 loss of function mutant revealed that silencing of AtCIPK6 confers ABA insensitive growth phenotypes and enhances sensitivity to low phosphate stress, suggesting the AtCIPK6 gene is involved in response to salt, low phosphate and ABA. However, we did not observe obvious phenotypic changes under exogenous BL treatment.
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