长雄野生稻地下茎基因Rhz2、Rhz3精细定位及地下茎全基因组表达谱分析
|
摘要
一年生的栽培稻品种在坡地种植时会导致土壤侵蚀并降低农民的收成,具有地下茎性状的多年生栽培稻品种能够在生产稻米的同时减少土壤侵蚀进而提高粮食和生态安全。具有地下茎的长雄野生稻是多年生稻作品种遗传改良中多年生性状和地下茎性状的逻辑供体。但是,通过传统杂交育种方法获得具有多年生性状的栽培稻品种的努力一直未取得成功。稻属地下茎的生长特性受到许多基因的控制,而与地下茎起始和生长的分子机制一直以来是不清楚的。为了有助于对地下茎性状分子机制的了解,我们利用基因精细定位和芯片技术,在水稻第三染色体和第四染色体上分别精细定位了以前初步分子定位的地下茎基因Rhz2和Rhz3,同时,对地下茎生长点、地下茎节间、地上茎生长点、地上茎节间和嫩叶进行全基因表达谱分析,以此来完善我们在分子水平对地下茎发育的理解。
利用分子标记辅助选择方法(MAS),结合地下茎的有无、花粉育性、花药开裂等性状,从包含有5261个单株的F2群体中筛选了4个F2单株自交形成F3群体后进行地下茎基因Rhz2和Rhz3的精细定位。研究结果证实了以前发现的两个显性互补基因Rhz2和Rhz3控制地下茎表达的遗传规律；地下茎基因Rhz2精细定位在长雄野生稻基因组序列的scaffold2675和scaffold9327,这两个scaffold覆盖了长雄野生稻基因组的178.92kb,并整合到水稻第三号染色体上；地下茎基因Rhz3精细定位在长雄野生稻基因组序列的scaffold26912、scaffold30607, scaffold9358和scaffold6613,这四个scaffold覆盖了长雄野生稻基因组的40.49kb,并整合到水稻第四号染色体上。
利用Affymetrix公司的水稻基因组芯片(包含有51,279个探针,分别表示48,564个粳稻、1,260个籼稻的转录本)进行长雄野生稻地下茎全基因组表达谱的研究。研究结果表明5种组织中都有特异的基因群表达；58个基因在地下茎生长点中特异表达,其中几个基因与分蘖的起始和延伸相关；和地上茎生长点的表达水平相比,在地下茎生长点中发现了162个上调基因和261个下调基因,在这两种组织中,与植物激素有关的基因和具有冗余功能的基因家族受到明显的不同调控；几种顺式调控元件,包括CGACG, GCCCORE, GAGAC和一个Myb核心在地下茎生长点和地下茎节间中特异表达基因的上游启动子区富集；与地上茎生长点相比,两个涉及到ABA信号通路的顺式作用元件,RY重复和TAAAG在地下茎生长点中过表达；几个地下茎特异表达基因共同定位在地下茎相关QTLs的染色体区域,这些基因可能是地下茎相关基因克隆的功能候选基因。
长雄野生稻全基因组表达谱的研究结果表明地下茎的发育和生长是一个非常复杂的基因调控网络,并且在地下茎和分蘖的建成中可能存在一个重叠的调控机制。植物激素,如生长素(IAA)和赤霉素(GA)都涉及到地下茎发育中相应的信号通路。一些在地下茎中富集的顺式作用元件和地下茎特异基因能够共同定位在地下茎相关QTLs的染色体区域以及地下茎基因Rhz2和Rhz3的精细定位结果将会有利于这两个地下茎基因的克隆,也为进一步剖析控制地下茎生长特性的分子机制奠定了基础。研究结果将会有助于我们在禾本科的进化、多年生作物培育以及控制杂草保护环境等方面的理解和认知。
Cultivation of annual rice on steep hillsides causes soil erosion and reduces farm productivity. A perennial, rhizomatous rice cultivar would produce food and reduce erosion, subsequently, increase food and ecosystem security. A logical donor of the perennial and rhizomatous traits is Oryza longistaminata, a perennial wild rice that produces rhizomes. However, traditional breeding efforts to transfer the trait have not yet been successful. The rhizomatous growth habit in rice is controlled by many genes, and the molecular mechanism related to rhizome initiation and elongation is still unknown. Using the strategies of fine mapping and microarray technology, we fine mapped the rhizome genes that are Rhz2 and Rhz3 which were mapped preliminary via molecular marker on rice chromosome 3 and chromosome 4, respectively. Meanwhile, we also investigated the gene expression patterns in rhizome tips, rhizome internodes, aerial shoot tips, aerial shoot internodes, and young leaves to improve our understanding of rhizome development at the molecular level.
There are 4 F3 populations, which derived from the self-crossing generation of F2 individual that selected via MAS, rhizome present, pollen fertility and anther dehiscence from a F2 population within 5261 individuals, were employed to fine map the rhizome genes, Rhz2 and Rhz3. The two dominant-complementary genes controlling rhizomatousness was confirmed. The Rhz2 was fine mapped to the scaffold2675 and scaffold9327 which are coved 178.92kb on the physical map of O. longistaminata on rice chromosome 3 and the Rhz4 was located on the scaffold26912, scaffold30607, scaffold9358 and scaffold6613, which are coved 40.49kb on the physical map of O. longistaminata on rice chromosome 4.
Microarray experiments were performed using one Affymetrix GeneChip Rice Genome Array (Santa Clara, CA) for the five samples. The array contains 51,279 probe sets representing 48,564 japonica and 1,260 indica transcripts. Different gene sets were determined exclusively expressed in five tissues.58 genes were identified as prevalent sets in the rhizome tip. Of these, several genes were functionally involved in tiller initiation and elongation. We found 162 genes up-regulated and 261 genes down-regulated in rhizome tips compared to the expression level in shoot tips that we examined. Strikingly, the genes related to phytohormone and the gene families with redundancy function were obviously differentially regulated in these two tissues. Several cis-regulatory elements, including CGACG, GCCCORE, GAGAC and a Myb Core, were highly enriched in the rhizome tip or internode, and two cis-elements, RY repeat and TAAAG, which are implicated in the ABA signaling pathway, were found overrepresented in the rhizome tip in comparison with the shoot tip. A few rhizome-specific expressed genes were co-localized on the rhizome-related QTLs regions, indicating these genes may be good functional candidates for the cloning of rhizome-related genes.
The whole genome profiling of O. longistaminata indicated that a very complex gene regulatory network underlies rhizome development and growth, and that there might be an overlapping regulatory mechanism in the establishment of rhizomes and tillers. Phytohormones such as IAA and GA are involved in the signaling pathway in determining rhizomes. Several cis-elements enriched in rhizomes and rhizome-specific genes co-localized on the rhizome-related QTL intervals provide a base for further dissection of the molecular mechanism that controls the rhizomatous growth habit. The fine mapping of the Rhz2 and Rhz3 will facilitate cloning of the genes, which may contribute significantly to our understanding of grass evolution, advance opportunities to develop perennial cereals, and offer insights into environmentally benign wee-control strategies.
利用分子标记辅助选择方法(MAS),结合地下茎的有无、花粉育性、花药开裂等性状,从包含有5261个单株的F2群体中筛选了4个F2单株自交形成F3群体后进行地下茎基因Rhz2和Rhz3的精细定位。研究结果证实了以前发现的两个显性互补基因Rhz2和Rhz3控制地下茎表达的遗传规律；地下茎基因Rhz2精细定位在长雄野生稻基因组序列的scaffold2675和scaffold9327,这两个scaffold覆盖了长雄野生稻基因组的178.92kb,并整合到水稻第三号染色体上；地下茎基因Rhz3精细定位在长雄野生稻基因组序列的scaffold26912、scaffold30607, scaffold9358和scaffold6613,这四个scaffold覆盖了长雄野生稻基因组的40.49kb,并整合到水稻第四号染色体上。
利用Affymetrix公司的水稻基因组芯片(包含有51,279个探针,分别表示48,564个粳稻、1,260个籼稻的转录本)进行长雄野生稻地下茎全基因组表达谱的研究。研究结果表明5种组织中都有特异的基因群表达；58个基因在地下茎生长点中特异表达,其中几个基因与分蘖的起始和延伸相关；和地上茎生长点的表达水平相比,在地下茎生长点中发现了162个上调基因和261个下调基因,在这两种组织中,与植物激素有关的基因和具有冗余功能的基因家族受到明显的不同调控；几种顺式调控元件,包括CGACG, GCCCORE, GAGAC和一个Myb核心在地下茎生长点和地下茎节间中特异表达基因的上游启动子区富集；与地上茎生长点相比,两个涉及到ABA信号通路的顺式作用元件,RY重复和TAAAG在地下茎生长点中过表达；几个地下茎特异表达基因共同定位在地下茎相关QTLs的染色体区域,这些基因可能是地下茎相关基因克隆的功能候选基因。
长雄野生稻全基因组表达谱的研究结果表明地下茎的发育和生长是一个非常复杂的基因调控网络,并且在地下茎和分蘖的建成中可能存在一个重叠的调控机制。植物激素,如生长素(IAA)和赤霉素(GA)都涉及到地下茎发育中相应的信号通路。一些在地下茎中富集的顺式作用元件和地下茎特异基因能够共同定位在地下茎相关QTLs的染色体区域以及地下茎基因Rhz2和Rhz3的精细定位结果将会有利于这两个地下茎基因的克隆,也为进一步剖析控制地下茎生长特性的分子机制奠定了基础。研究结果将会有助于我们在禾本科的进化、多年生作物培育以及控制杂草保护环境等方面的理解和认知。
Cultivation of annual rice on steep hillsides causes soil erosion and reduces farm productivity. A perennial, rhizomatous rice cultivar would produce food and reduce erosion, subsequently, increase food and ecosystem security. A logical donor of the perennial and rhizomatous traits is Oryza longistaminata, a perennial wild rice that produces rhizomes. However, traditional breeding efforts to transfer the trait have not yet been successful. The rhizomatous growth habit in rice is controlled by many genes, and the molecular mechanism related to rhizome initiation and elongation is still unknown. Using the strategies of fine mapping and microarray technology, we fine mapped the rhizome genes that are Rhz2 and Rhz3 which were mapped preliminary via molecular marker on rice chromosome 3 and chromosome 4, respectively. Meanwhile, we also investigated the gene expression patterns in rhizome tips, rhizome internodes, aerial shoot tips, aerial shoot internodes, and young leaves to improve our understanding of rhizome development at the molecular level.
There are 4 F3 populations, which derived from the self-crossing generation of F2 individual that selected via MAS, rhizome present, pollen fertility and anther dehiscence from a F2 population within 5261 individuals, were employed to fine map the rhizome genes, Rhz2 and Rhz3. The two dominant-complementary genes controlling rhizomatousness was confirmed. The Rhz2 was fine mapped to the scaffold2675 and scaffold9327 which are coved 178.92kb on the physical map of O. longistaminata on rice chromosome 3 and the Rhz4 was located on the scaffold26912, scaffold30607, scaffold9358 and scaffold6613, which are coved 40.49kb on the physical map of O. longistaminata on rice chromosome 4.
Microarray experiments were performed using one Affymetrix GeneChip Rice Genome Array (Santa Clara, CA) for the five samples. The array contains 51,279 probe sets representing 48,564 japonica and 1,260 indica transcripts. Different gene sets were determined exclusively expressed in five tissues.58 genes were identified as prevalent sets in the rhizome tip. Of these, several genes were functionally involved in tiller initiation and elongation. We found 162 genes up-regulated and 261 genes down-regulated in rhizome tips compared to the expression level in shoot tips that we examined. Strikingly, the genes related to phytohormone and the gene families with redundancy function were obviously differentially regulated in these two tissues. Several cis-regulatory elements, including CGACG, GCCCORE, GAGAC and a Myb Core, were highly enriched in the rhizome tip or internode, and two cis-elements, RY repeat and TAAAG, which are implicated in the ABA signaling pathway, were found overrepresented in the rhizome tip in comparison with the shoot tip. A few rhizome-specific expressed genes were co-localized on the rhizome-related QTLs regions, indicating these genes may be good functional candidates for the cloning of rhizome-related genes.
The whole genome profiling of O. longistaminata indicated that a very complex gene regulatory network underlies rhizome development and growth, and that there might be an overlapping regulatory mechanism in the establishment of rhizomes and tillers. Phytohormones such as IAA and GA are involved in the signaling pathway in determining rhizomes. Several cis-elements enriched in rhizomes and rhizome-specific genes co-localized on the rhizome-related QTL intervals provide a base for further dissection of the molecular mechanism that controls the rhizomatous growth habit. The fine mapping of the Rhz2 and Rhz3 will facilitate cloning of the genes, which may contribute significantly to our understanding of grass evolution, advance opportunities to develop perennial cereals, and offer insights into environmentally benign wee-control strategies.
引文
1.蔡晶,新基因的从头起源与几种重要物种的进化基因组学研究.博士学位论文.北京,中国科学院研究生院.2010.
2.陈建三,尹林,曹婉君,薛领,非洲长雄蕊野生稻的遗传特性及其固定杂种优势研究探讨.中国农业科学.1995,28(5)：22-28.
3.胡凤益,长雄野生稻(Oryza longisaminata)地下茎分子定位和遗传研究.硕士学位论文.重庆,西南农业大学.2002.
4.李勤修等,长药野生稻的研究及其利用.四川农业科技.1981,6：6-8.
5.陶大云胡凤益等,长雄野生稻繁殖特性的研究利用.周光召主编,面向21世纪的科技进步与社会经济发展.北京,中国科学技术出版社.1999,p1182.
6.王迪,水稻旱胁迫条件下的全基因组时空表达谱.博士学位论文.沈阳.沈阳农业大学.2008.
7.肖叶青等,“双重”低温加压选育越冬稻效果分析.中国农学会等编,21世纪水稻遗传育种展望.北京,农业科技出版社.1999.p379-382.
8. Angeles E. R., Advance breeding lines with resistance tugro viruses. Int. Rice Res. Notes.1998,23 (1):17-18.
9. Bezancon G., Bozza J.L., Second G., Variability of Oryza longisitaminata and the sativa complex of oryza in Africa. Ecological and evolutive aspects.1977, pp.47-55 in Meeting of African rice species,25-26 Jan 1997 IRAT-Orstom, Paris.
10. Birnbaum K., and Benfey, P.N., Network building:transcriptional circuits in the root. Curr. Opin. Plant Biol.2004,7:582-588.
11. Bo D., zhang W., Liu B., Hu J., Wei Z., Shi Z., He R., Zhu L., Chen R., Han B., and He G, Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. PNAS.2009,106(52):22163-22168.
12. Bowman J. L., The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol.2000,3: 17-22.
13. Bowman J. L., Eshed Y., Baum S.F., Establishment of polarity in angiosperm lateral organs. Trends Genet.2002,18:134-41.
14. Brar D. S., and Khush G. S., Transferring genes from wild species into rice. In:Quantitative Genetics, Genetics and Olant Breeding (M.S. Kang ed.). CAB International, Wallingford, UK. 2001.
15. Brown R. L., Kazan K., McGrath K. C., Maclean D. J., Manners J. M., A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol.2003, 132:1020-1032.
16. Burgeff C., Liljegren S. J., Tapia-Lopez R., Yanofsky M. F., Alvarez-Buylla E. R., MADS-box gene expression in lateral primordia, meristems and differentiated tissues of Arabidopsis thaliana roots. Planta.2002,214(3):365-72.
17. Cardon G., Hohmann S., Klein J., Nettesheim K., Saedler H., Huijser P., Molecular characterization of the Arabidopsis SBP-box genes. Gene.1999,237(1):91-104.
18. Cassab G. I., Plant cell wall proteins. Annual Review of Plant Physiology and Plant Molecular Biology.1998,49:281-309.
19. Causse M., Ghesquiere A., Prosoective use of Oryza longistaminata for rice breeding.1991, pp. 81-89 in Rice Genetics Ⅱ, edited by G. S. Khush. International Rice Research Institute (IRRI), Los Banos, Philippines
20. Causse M. A., Fulton T. M., Cho Y. G, Ahn S. N., Chunwongse J., Wu K., Xiao J., Yu Z., Rpnald P. C., Harrington S. E., Second G, McCouch R. S., and Tanksley S. D., Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics.1994.138:1251-1274.
21. Chen W., Provart N. J., Glazebrook J. et al., Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell. 2002,14,559-574.
22. Choi D., Lee Y, Cho H. T., Kende H., Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants. The Plant Cell.2002,15:1386-1398.
23. Choi D., Kim J. H., Kende H., Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.). Plant Cell Physiol.2004, 45(7):897-904.
24. Chu Y. E. et al., Reproductive barriers distributed in cultivated rice species and their wild relatives. Japan J Genet.1969,44:207-223.
25. Chu, Y. E., Oka H. I., The genetic basis of crossing barriers between Oryza perennis subsp. Barthii and its related taxa. Evolution.1970.24:135-144.
26. Cox T. S., et. al., Breeding perennial grain crops. Critical Reviews in Plant Sciences.2002, 21(2):59-91.
27. Cox T. S., Glover J. D., Tassel D. L. V., Cox C. M., Dehaan L. R., Prospects for developing perennial grain crops. BioSciences.2006,56(8):649-658.
28. Doi K. et al., Genetic variation in rice. Current Opinion in Plant Biology.2008,11:1-5.
29. Dong C., Thomas S., Becker D., Lorz H., Whitford R., Sutton T, Able J. A., Langridge P., WM5: Isolation and characterisation of a gene expressed during early meiosis and shoot meristem development in wheat. Functional plant biology.2005,32(3):249-258.
30. Doukhanina E. V., Chen S., van der Zalm E., Godzik A., Reed J., Dickman M. B., Identification and functional characterization of the BAG protein family in Arabidopsis thaliana. J Biol Chem. 2006,281(27):18793-801.
31. Ezcurra I., Ellerstrom M., Wycliffe P., Stalberg K., Rask L., Interaction between composite elements in the napA promoter:both the B-box ABA-responsive complex and the RY/G complex are necessary for seed-specific expression. Plant Mol Biol.1999,40:699-709.
32. Fang Y., You J., Xie K., Xie W., Xiong L., Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol Genet Genomics.2008,280(6):547-63.
33. Farrokhi N., Burton R. A., Brownfield L., Hrmova M, Wilson S. M., Bacic A., Fincher G. B., Plant cell wall biosynthesis:genetic, biochemical and functional genomics approaches to the identification of key genes. Plant Biotechnology Journal.2005,4(2):145-167.
34. Friml J., Wisniewska J., Benkova E., Mendgen K., Palme K., Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature.2002,415:806-809.
35. Furutani I., Sukegawa S., Kyozuka J., Genome-wide analysis of spatial and temporal gene expression in rice panicle development. Plant J 2006,46(3):503-11.
36. Ghesquiere A., Evolution of Oryza longistaminata. In:Rice Genetics. International Rice Research Institute (IRRI). Los Banos, Philippines.1985, P 15-27.
37. Ghesquiere A., Diversire genetique de 1'espece sauvage de riz Oryza longistaminata A. Chev. Et Rorth et dynamique des flux geniques au sein du groupe sativa en Afrique. These Doc. Etat. Universite Paris XI Orsay.1988, Pp 228.
38. Ghesquiere A., Re-examination of genetic control of the reproductive barrier between Oryza longistaminata and O. sativa and relationship with rhizome expression. In:G.S. Khush, ed, Rice Genetics Ⅱ. International Rice Research Institute (IRRI). Los Banos, Philippines.1991, Pp. 729-730.
39. Ghesquiere A., Causse M., Linkage study between molecular markers and genes controlling the reproductive barrier in interspecific backcross between O. sativa and O. longistaminata. RGN. 1992,9:28-31.
40. Gizmawy I., Kigel J., Koller D., Ofir M., Initiation, orientation and early development of primary rhizomes in Sorghum halepense (L.) Pers. Annals of Botany.1985,55:343-350.
41. Glover J. D., The necessity and possibility of perennial grain production system. Renewable Agriculture and Food Systems.2005,20(1):1-4.
42. Glover J. D., Reganold J. P., Bell L. W., Borevitz J., Brummer E. C., Buckler E. S., Cox C. M.,T. S. Cox, Crews T. E., S. W. Culman, L. R. DeHaan, D. Eriksson, B. S. Gill, J. Holland, F. Hu, B. S. Hulke, A. M. H. Ibrahim, W. Jackson, S. S. Jones, S. C. Murray, A. H. Paterson, E. Ploschuk, E. J. Sacks, S. Snapp, D. Tao, D. L. Van Tassel, L. J. Wade, D. L. Wyse, Y. Xu., Increased Food and Ecosystem Security via Perennial Grains. Science.2010,328:638-1639.
43. Gutterson N., Zhang J.Z., Genomics applications to biotech traits:a revolution in progress. Curr. Opin. Plant Biol.2004,7:226-230.
44. Harmer S. L., Hogenesch J.B., Straume M., Chang H.S., Han B., Zhu T., Wang X., Kreps J.A., Kay S.A., Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science. 2000,290:2110-2113.
45. Hayward P. S., Beveridge C., Leyser O., Interactions between Auxin and Strigolactone in Shoot Branching Control. Plant Physiology.2009,151(1):400-412.
46. Hobo T., Suwabe K., Aya K., Suzuki G., Yano K., Ishimizu T., Fujita M., Kikuchi S., Hamada K., Miyano M., Fujioka T., Kaneko F., Kazama T., Mizuta Y., Takahashi H., Shiono K., Nakazono M., Tsutsumi N., Nagamura Y, Kurata N., Watanabe M., Matsuoka M., Various Spatiotemporal Expression Profiles of Anther-Expressed Genes in Rice. Plant Cell Physiol.2008, 49(10):1417-1428.
47. Hu F. Y., et al., Rice heterosis fixing by means of vegetative propagation from Oryza longisatminata. pp.95 In:abstracts of 4th International Symposium on Hybrid Rice. Mayl4-17, 2002a, Hanoi, Vietnam.
48. Hu F. Y., et al., Molecular mapping of two dominant complementary genes controlling rhizome presence using interspecific Oryza sativalO. longistaminata F2 population, pp.264 In:Abstracts of International Rice Congress. September 16-20,2002b, Beijing, China.
49. Hu F. Y., Tao D. Y., Sacks E., Fu B. Y., Xu P., Li J., Yang Y, McNally K., Khush G. S., Paterson A. H., and Li Z. K., Covergent evolution of perenniality in rice and sorghum. PNAS.2003,100(7): 4050-4054.
50. Huang Z., He G. C., Shu L. H., Li X. H., Zhang Q. F., Identification and mapping of two brown planthopper resistance genes in rice. Theor Appl Genet.2001,102:929-934.
51. Hwang Y. S., Karrer E. E., Thomas B. R., Chen L., Rodriguez R. L., Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation. Plant Mol Biol.1998, 36:331-341.
52. Imelda R., Soriano V, Schmit D. S., Brar J. C., Prot G., Reversat, Resistance to rice roo-knot nematode Meloidogyne graminicola identified in Oryza longistaminata and O. glaberrima. Nematology.1999, 1(4):395-398.
53. Inada S., Ohgishi M., Mayama T., Okada K., Sakai T., RPT2 Is a Signal Transducer Involved in Phototropic Response and Stomatal Opening by Association with Phototropin 1 in Arabidopsis thaliana. Plant Cell.2004,16(4):887-896.
54. International Rice Research Institute. IRRI toward 2000 and beyond. International Rice Research Institute, Manila,1988. Pp.66.
55. IRGSP, The map-based sequence of the rice genome. Nature 2005,436:793-800.
56. Iwakawa H., Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, Machida Y:The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 2002,43(5):467-78.
57. Jang C. S., Kamps T. L., Skinner D. N., Schulze S. R., Vencill W. K., Paterson A. H., Functional Classification, Genomic Organization, Putatively cis-Acting Regulatory Elements, and Relationship to Quantitative Trait Loci, of Sorghum Genes with Rhizome-Enriched Expression. Plant Physiology.2006,142:1148-1159.
58. Jiao Y., Tausta S. L., Gandotra N., Sun N., Liu T., Clay N. K., Ceserani T., Chen M., Ma L., Holford M., Zhang H. Y, Zhao H., Deng X. W., Nelson T., A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet.2009,41(2):258-63.
59. Jin J., Huang W., Gao J., Yang J., Shi M., Zhu M., Luo D., Xuan Lin H.. Genetic control of rice plant architecture under domestication. Nature Genetics. Nature Genetics 2008,40:1365-1369
60. Joseph D. C., Zhu T., Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems:practical consideration and perspectives. The plant journal.2006, 45:430-650.
61. Jung K. H., Dardick C., Bartley L. E., Cao P., Phetsom J., Canlas P., Seo Y. S., Shultz M., Ouyang S., Yuan Q. P., Frank B. C., Ly E., Zheng L., Jia Y, Hsia A. P., An K., Chou H. H., Rocke D., Lee G C., Schnable P. S., An G, Buell C. R., Ronald P. C., Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays:Evaluation of Gene-Redundancy. PLoS ONE.2008, 3(10):e3337.
62. Jung K. H., Han M. J., Lee Y. S., Kim Y. W., Hwang I., Kim M. J., Kim Y. K., Nahm B. H., An G, Rice Undeveloped Tapetuml is a major regulator of early tapetum development. Plant Cell.2005, 17:2705-2722.
63. Lescallett J., Chicurel M. E., Lipshutz R., Dalma D. D., Monitoring eukaryotic gene expression using oligonucleotide microarrays. Methods Mol. Biol.2004,258:71-94.
64. Kano Y., Yanai T., Tagiri A., Matsuoka M., A rice homeotic gene, OSH1, causes unusual phenotypes in transgenic tobacco. FEBS Letter.1993,334(3):365-368.
65. Kaur P., Mott I. W., Larson S. R., Bushman B. S., Kim R. W., Hernandez A. G., Liu L., Mikel M. A., Gene expression polymorphisms and ESTs associated with gravitropic response of subterranean branch meristem and growth habit in Leymus wildryes. Plant sciences.2008,175:330-338.
66. Khush G. S., Bacalango E., Ogawa T., A new gene for resistance to bacterial bilght from O. longistaminata. Rice Genet. Newsl.1990,7:121-122.
67. Kim W. Y., Hicks K. A., Somers D. E., Independent Roles for EARLY FLOWERING 3 and ZEITLUPE in the Control of Circadian Timing, Hypocotyl Length, and Flowering Time. Plant Physiology.2005,139:1557-1569.
68. Komatsu K., Maekawa M., Ujiie S., Satake Y., Furutani I., Okamoto H., Shimamoto K., Kyozuka J., LAX and SPA:Major regulators of shoot branching in rice. PNAS.2003,100(20):11765-11770.
69. Koyama T., Furutani M., Tasaka M., Takagi M., TCP Transcription Factors Control the Morphology of Shoot Lateral Organs via Negative Regulation of the Expression of Boundary-Specific Genes in Arabidopsis. The Plant Cell.2007,19:473-484.
70. Kusaba S., Kano M. Y., Matsuoka M., Tamaoki M., Sakamoto T., Yamaguchi I., Fukumoto M., Alteration of Hormone Levels in Transgenic Tobacco Plants Overexpressing the Rice Homeobox Gene OSH1. Plant Physiol.1998,116:471-476.
71. Kyozuka J., Konishi S., Nemoto K., Izawa T., Shimamoto K., Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation. PNAS.1998, 95:1979-1982.
72. Lander E., Gree P., Construction of Multilocus genetic Maps in Humans. Proc. Nat. Acad. Sci. USA. 1987,84:2363-2367.
73. Lee Y., Kende H., Expression of -Expansin and Expansin-Like Genes in Deepwater Rice. Plant Physiol.2002,130:1396-1405.
74. Li C., Potuschak T., Colon A., Gutierrez R. A., Doerner P., Arabidopsis TCP20 links regulation of growth and cell division control pathways. PNAS.2005,102(36):12978-83.
75. Li XY, Qian Q, Fu ZM, Wang YH, Xiong GS, Zeng DL, Wang XQ, Liu XF, Teng S, Hiroshi F, Yuan M, Luo D, Han B & Li JY:Control of tillering in rice. Nature 2003,422:618-621.
76. Lin H., Wang R., Qian Q., Yan M., Meng X., Fu Z., Yan C., Jiang B., Su Z., Li J., Wang Y, DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Plant Cell.2009,21:1512-1525.
77. Lockhart D. J., Dong H., Byrne M.C. et al., Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol.1996,14:1675-1680.
78. Lu B. R. et al., Preliminary studies on taxonomy and biosystematics of the AA genome Oryza Species (Poaceae). In:Jacobs S W L and J Everett(Eds.), Grasses:systematics and evolution. CSIRO,2000, p.51-58.
79. Lynn K., Fernandez A., Aida M., Sedbrook J., Tasaka M., Masson P., Barton M. K., The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. Development.1999,126:469-481.
80. Ma L., Chen C., Liu X., Jiao Y., Su N., Li L., Wang X., Cao M., Sun N., Zhang X., Bao J., Li J., Pedersen S., Bolund L., Zhao H., Yuan L., Wong G. K., Wang J., Deng X. W., Wang J., A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res.2005, 15:1274-1283.
81. Maekawa M., Identify cold tolerance gene9sO in rice at the booting stage. In:G. S. Khush, ed, Rice genetics Ⅲ. International Rice Research Institute, Los Banos, Philippines.1996, Pp.428-433.
82. Maekawa M., Inukai T., Rikiishi K., Matsuura T., and Govindaraj K. G, Inheritance of the rhizomatous traits in hybrid of Oryza longistaminata Chev. Et Roehr. And O. sativa L. SABRAO journal of breeding & Genetic.1998,30 (2):69-72.
83. Manly K. F., Cudnore E. H., New versions of MAP Manager Genetic mapping software. In Plant Genome IV abstract 1996, Pp105.
84. Maruyama N. A., Nakamura Y., Watanabe T. A., Inoue E., Yamaya T., Takahashi H., Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Plant J. 2005,42:305-314.
85. McCouch S. R., Abenes M. L., Angeles R., Khush G. S., Tanksley S. D., Molecular tagging of a recessive gene xa-5 for resistance to bacterial blight of rice. Rice Genet. Newsl.1991,8:143-145.
86. Mei R., Hubbell E., Bekiranov S. et al., Probe selection for high-density oligonucleotide arrays. Proc. Natl Acad. Sci. USA.2003,100:11237-11242.
87. Mizoguchi T., Coupand G., ZEITLUPE and FKF1:novel connections between flowering time and circadian clock control. Trends Plant Sci.2000,5(10):409-411.
88. Moussian B., Schoof H., Haecker A., Juergens G., Laux T., Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis. EMBO J.1998, 17:1799-1809.
89. Munekage Y., Hojo M., Meurer J., Endo T., Tasaka M., Shikanai T., PGR5 Is Involved in Cyclic Electron Flow around Photosystem I and Is Essential for Photoprotection in Arabidopsis. Cell. 2002,110(3):361-371.
90. Nayar N. M., Prevalence of self-incompatibility in Oryza bathii cheval., its bearing on the evolution of rice and related taxa. Genetica.1968,38:521-527.
91. Ohyama H., Zhang X., Kohno Y., Alevizos I., Posner M., Wong D.T., Todd R., Laser capturemicrodissection-generated target sample for high-density oligonucleotide array hybridization. Biotechniques.2000,29:530-536.
92. Oikawa T., Kyozuka J., Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice. The Plant Cell.2009,21:1095-1108.
93. Oka, H. I., Morishima H., Variation in the breeding system of a wild rice, Oryza perennis. Evolution.1967 21:249-258.
94. Panaud O., Chen X., McCouch S. R., Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice(Oryza sativa L.). Mol. Gen. Genet.1996, 252:597-607.
95. Paterson A. H., Bowers J. E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A. K., Chapman J., Feltus F. A., Gowik U., Grigoriev I. V., Lyons E., Maher C. A., Martis M., Narechania A., Otillar R. P., Penning B. W., Salamov A. A., Wang Y, Zhang L., Carpita N. C., Freeling M., Gingle A. R., Hash C. T., Keller B., Klein P., Kresovich S., McCann M. C., Ming R., Peterson D. G, Mehboob R., Ware D., Westhoff P., Mayer K. F., Messing J., Rokhsar D. S., The Sorghum bicolor genome and the diversification of grasses. Nature.2009,457(7229):551-556.
96. Paterson A. H., Schertz K. F., Lin Y. R., Liu S. C., Chang Y. L., The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers. Proc Natl Acad Sci USA.1995,92:6127-6131.
97. Planchais S., Perennes C., Glab N., Mironov V., Inze D., Bergounioux, Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath; CycB1; 1 transcription and identification of putative regulatory proteins. Plant Mol Biol.2002,50:111-127.
98. Plesch G., Ehrhardt T., Mueller R. B., Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression. Plant J.2001,28:455-464.
99. Ramdas L., Cogdell D. E., Jia J. Y, Taylor E. E., Dunmire V. R., Hu L., Hamilton S.R., Zhang W., Improving signal intensities for genes with low-expression on oligonucleotide microarrays. BMC Genomics.2004,5:35.
100. Sacks E., et al., Developing perennial upland rice Ⅱ:Field performance of S1 families from an intermated Oryza sativa/O. longistaminata population. Crop Sci.2003.43:129-134.
101. Sacks E., et al., Clonal performance of perennial Oryza sativa/O. rufipogon selections and their combining ability with O. sativa cultivars for survival, stolon production and yield. Field Crops Research.2007,100:155-167.
102. Sacks E. J., Dhanapala M. P., Tao D. Y., St. Cruz M. T., Sallan R., Breeding for perennial growth and fertility in an Oryza sativa/O. longistaminata population. Field Crop Research 2006,95(1): 39-48.
103. Sacks E. J., Schmit V., McNally K. L., Sta Cruz M. T., Fertility in an interspecific rice population and its effect on selection for rhizome length. Field Crops Research.2006,95(1):30-38.
104. Sato Y., Hong S. K., Tagiri A., Kitano H., Yamamoto N., Nagato Y., and Matsuoka M., A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis. PNAS.1996,93(15):8117-8122.
105. Schena M., Shalon D., Davis R.W., Brown P. O., Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science.1995,270:467-470.
106. Schmit V., Improving sustainability in the uplands through the development of a perennial upland rice. In:Piggin C., Courtois B., and Schmit V, ed. Upland Rice Research in Partnership, Proceedings of the Upland Rice Consortium Workshop; 4-13 January 1996; Padang, Indonesia. P265-273.
107. Schmid M., Davison T.S., Henz S.R., Pape U.J., Dema, M., Vingron M., Scholkopf B., Weigel D., Lohmann J. U., A gene expression map of Arabidopsis thaliana development. Nat. Genet.2005, 37:501-506.
108. Shimono M., Sugano S., Nakayama A., Jiang C. J., Ono K., Toki S., Takatsuji H., Rice WRKY45 Plays a Crucial Role in Benzothiadiazole-Inducible Blast Resistance. Plant Cell.2007, 19:2064-2076.
109. Song Y., Wang L., Xiong L., Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta.2009, 229(3):577-91.
110. Song Y. L., Wang G. L., Chen L. L., Kim H., Pi L. Y, Holsten T., Garder J., Wang B., Zhai W. X., Zhu L. H., Fauquet Z., Roulnd P., A receptor kinas-like protein encorded by the rice disease resistance gene,Xa21. Science.1995,279:10884-1086.
111. Sreenivasulu N., Radchuk V, Strickert M., Miersch O., Weschke W., Wobus U., Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA-regulated maturation in developing barley seeds. Plant J.2006,47(2):310-27.
112. Stalker H. T., Utilization of wild species for crop improvement. Advances in Agronomy,1980, 33:111-147.
113. Su N., He K., Jiao Y., Chen C., Zhou J., Li L., Bai S., Li X., Deng X.W., Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice. Plant Mol Biol.2007,63(3):337-49.
114. Sun B. G., Firtel R. A., A Regulator of G Protein Signaling-containing Kinase Is Important for Chemotaxis and Multicellular Development in Dictyostelium. Mol Biol Cell.2003, 14(4):1727-1743.
115. Takeda T., Suwa Y., Suzuki M., Kitano H., Ueguchi T. M., Ashikari M., Matsuoka M., Ueguchi C., The OsTBl gene negatively regulates lateral branching in rice. Plant J.2003,33:513-520.
116. Tan L., Li X., Liu F., Sun X., Li C., Hu Z., Fu Y., Cai H., Wang X., Xie D., Sun C., Control of a key transition from prostrate to erect growth in rice domestication. Nature Genetics.2008.
117. Tao D., Hu F., Yang Y, Xu P., Li J., Wen G, Sacks E., McNally K., Sripichitt P., Rhizomatous individual was obtained from interspecific BC2F1 progenies between Oryza sativa and Oryza longistaminata. Rice Genet Newsl.2001,18:11-13.
118. Tao D., Hu F., Yang F., Xu P., Li J., Sacks E., McNally K., Scripichitt P., Rhizomatous individual was obtained from inerspecific BC1F1 progenies between Oryza sativa and O. longistaminata. The abstract of International Rice Genetic Symposium.22-27 October 2000. International Rice Research Institute, Los Bnaos, Philippines.
119. Tao D., Hu F., Sacks E., McNally K., et al., Several lines with Rhizomatous were obtained from interspecific BC2F1 progenies of RD23/O.longistaminata backcrossed to RD23. Division Seminars of PBGB, International Rice Research Institute, Los Banos, Philippines,2001.
120. Tapia R., Garcia B., Dubrovsky J. G, Garay A., Perez R., Kim S. H., Acevedo F., Pelaz S., Alvarez E. R., An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis. Plant physiology.2008,146(3):1182-92.
121. Thomas S. G., Phillips A. L., Hedden P., Molecular cloning and functional expression of gibberellin 2-oxidases, multifunctional enzymes involved in gibberellin deactivation. PNAS.1999, 96:4698-4703.
122. Tian C., Muto H., Higuchi K., Matamura T., Tatematsu K., Koshiba T., Yamamoto K. T., Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J.2004,40(3):333-43.
123. Vaughan D. A., The wild relatives of Rice. A genetic resources handbook, IRRI, Manila, Philippines 1994, Pp46-47.
124. Walia H., Wilson C., Condamine P., Liu X., Ismail A. M., Zeng L., Wanamaker S. I., Mandal J., Xu J., Cui X., Close T. J., Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol.2005,139:822-835.
125. Wang Z., Xie W. Q., Chi F., Li C. F., Identification of non-specific lipid transfer protein-1 as a calmodulin-binding protein in Arabidopsis. FEBS Letter.2005,579(7):1683-1687.
126. Wangoner P., Perennial grain development:past efforts and potential for the future. Critical reviews in Plant Sciences.1990,9(5):381-408.
127. Woo Y., Affourtit J., Daigle S., Viale A., Johnson K., Naggert J. Churchill G., A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms. J. Biomol. Tech.2004,15:276-284.
128. Xiu L. Q., Breeding for perennial hybrid rice. Division Seminars of Plant Breeding, Genetics and Biochemistry; International Rice Research Institute, Manila, Philippines.1995.
129. Yanagisawa S., The Dof family of plant transcription factors. Trends in Plant Science.2002,7(12): 555-560.
130. Yeats T. H., Rose J. K., The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs). Protein Sci.2008,17:191-198.
131. Zhang S., Hu W., Wang L., Lin C., Cong B., Sun C., Luo D., TFL1/CEN-like genes control intercalary meristem activity and phase transition in rice. Plant Sciences.2005,168(6):1393-1408.
132. Zhao Y., Christensen S. K., Fankhauser C., Cashman J. R., Cohen J. D., Weigel D., Chory J., A Role for Flavin Monooxygenase-Like Enzymes in Auxin Biosynthesis. Science.2001, 291(5502):306-309.
133. Zhou J., Wang X., Jiao Y, Qin Y, Liu X., He K., Chen C., Ma L., Wang J., Xiong L., Zhang Q., Fan L., Deng X. W., Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol.2007,63(5):591-608.
134. Zhu T., Global analysis of gene expression using GeneChip microarrays. Curr. Opin. Plant Biol. 2003,8:425.
135. www.gramene.org
136. www.dna.go.jp/place
137. http://faodo.wi.mit.edu
138. http://www.phytozome.net/
2.陈建三,尹林,曹婉君,薛领,非洲长雄蕊野生稻的遗传特性及其固定杂种优势研究探讨.中国农业科学.1995,28(5)：22-28.
3.胡凤益,长雄野生稻(Oryza longisaminata)地下茎分子定位和遗传研究.硕士学位论文.重庆,西南农业大学.2002.
4.李勤修等,长药野生稻的研究及其利用.四川农业科技.1981,6：6-8.
5.陶大云胡凤益等,长雄野生稻繁殖特性的研究利用.周光召主编,面向21世纪的科技进步与社会经济发展.北京,中国科学技术出版社.1999,p1182.
6.王迪,水稻旱胁迫条件下的全基因组时空表达谱.博士学位论文.沈阳.沈阳农业大学.2008.
7.肖叶青等,“双重”低温加压选育越冬稻效果分析.中国农学会等编,21世纪水稻遗传育种展望.北京,农业科技出版社.1999.p379-382.
8. Angeles E. R., Advance breeding lines with resistance tugro viruses. Int. Rice Res. Notes.1998,23 (1):17-18.
9. Bezancon G., Bozza J.L., Second G., Variability of Oryza longisitaminata and the sativa complex of oryza in Africa. Ecological and evolutive aspects.1977, pp.47-55 in Meeting of African rice species,25-26 Jan 1997 IRAT-Orstom, Paris.
10. Birnbaum K., and Benfey, P.N., Network building:transcriptional circuits in the root. Curr. Opin. Plant Biol.2004,7:582-588.
11. Bo D., zhang W., Liu B., Hu J., Wei Z., Shi Z., He R., Zhu L., Chen R., Han B., and He G, Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. PNAS.2009,106(52):22163-22168.
12. Bowman J. L., The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol.2000,3: 17-22.
13. Bowman J. L., Eshed Y., Baum S.F., Establishment of polarity in angiosperm lateral organs. Trends Genet.2002,18:134-41.
14. Brar D. S., and Khush G. S., Transferring genes from wild species into rice. In:Quantitative Genetics, Genetics and Olant Breeding (M.S. Kang ed.). CAB International, Wallingford, UK. 2001.
15. Brown R. L., Kazan K., McGrath K. C., Maclean D. J., Manners J. M., A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol.2003, 132:1020-1032.
16. Burgeff C., Liljegren S. J., Tapia-Lopez R., Yanofsky M. F., Alvarez-Buylla E. R., MADS-box gene expression in lateral primordia, meristems and differentiated tissues of Arabidopsis thaliana roots. Planta.2002,214(3):365-72.
17. Cardon G., Hohmann S., Klein J., Nettesheim K., Saedler H., Huijser P., Molecular characterization of the Arabidopsis SBP-box genes. Gene.1999,237(1):91-104.
18. Cassab G. I., Plant cell wall proteins. Annual Review of Plant Physiology and Plant Molecular Biology.1998,49:281-309.
19. Causse M., Ghesquiere A., Prosoective use of Oryza longistaminata for rice breeding.1991, pp. 81-89 in Rice Genetics Ⅱ, edited by G. S. Khush. International Rice Research Institute (IRRI), Los Banos, Philippines
20. Causse M. A., Fulton T. M., Cho Y. G, Ahn S. N., Chunwongse J., Wu K., Xiao J., Yu Z., Rpnald P. C., Harrington S. E., Second G, McCouch R. S., and Tanksley S. D., Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics.1994.138:1251-1274.
21. Chen W., Provart N. J., Glazebrook J. et al., Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell. 2002,14,559-574.
22. Choi D., Lee Y, Cho H. T., Kende H., Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants. The Plant Cell.2002,15:1386-1398.
23. Choi D., Kim J. H., Kende H., Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.). Plant Cell Physiol.2004, 45(7):897-904.
24. Chu Y. E. et al., Reproductive barriers distributed in cultivated rice species and their wild relatives. Japan J Genet.1969,44:207-223.
25. Chu, Y. E., Oka H. I., The genetic basis of crossing barriers between Oryza perennis subsp. Barthii and its related taxa. Evolution.1970.24:135-144.
26. Cox T. S., et. al., Breeding perennial grain crops. Critical Reviews in Plant Sciences.2002, 21(2):59-91.
27. Cox T. S., Glover J. D., Tassel D. L. V., Cox C. M., Dehaan L. R., Prospects for developing perennial grain crops. BioSciences.2006,56(8):649-658.
28. Doi K. et al., Genetic variation in rice. Current Opinion in Plant Biology.2008,11:1-5.
29. Dong C., Thomas S., Becker D., Lorz H., Whitford R., Sutton T, Able J. A., Langridge P., WM5: Isolation and characterisation of a gene expressed during early meiosis and shoot meristem development in wheat. Functional plant biology.2005,32(3):249-258.
30. Doukhanina E. V., Chen S., van der Zalm E., Godzik A., Reed J., Dickman M. B., Identification and functional characterization of the BAG protein family in Arabidopsis thaliana. J Biol Chem. 2006,281(27):18793-801.
31. Ezcurra I., Ellerstrom M., Wycliffe P., Stalberg K., Rask L., Interaction between composite elements in the napA promoter:both the B-box ABA-responsive complex and the RY/G complex are necessary for seed-specific expression. Plant Mol Biol.1999,40:699-709.
32. Fang Y., You J., Xie K., Xie W., Xiong L., Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol Genet Genomics.2008,280(6):547-63.
33. Farrokhi N., Burton R. A., Brownfield L., Hrmova M, Wilson S. M., Bacic A., Fincher G. B., Plant cell wall biosynthesis:genetic, biochemical and functional genomics approaches to the identification of key genes. Plant Biotechnology Journal.2005,4(2):145-167.
34. Friml J., Wisniewska J., Benkova E., Mendgen K., Palme K., Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature.2002,415:806-809.
35. Furutani I., Sukegawa S., Kyozuka J., Genome-wide analysis of spatial and temporal gene expression in rice panicle development. Plant J 2006,46(3):503-11.
36. Ghesquiere A., Evolution of Oryza longistaminata. In:Rice Genetics. International Rice Research Institute (IRRI). Los Banos, Philippines.1985, P 15-27.
37. Ghesquiere A., Diversire genetique de 1'espece sauvage de riz Oryza longistaminata A. Chev. Et Rorth et dynamique des flux geniques au sein du groupe sativa en Afrique. These Doc. Etat. Universite Paris XI Orsay.1988, Pp 228.
38. Ghesquiere A., Re-examination of genetic control of the reproductive barrier between Oryza longistaminata and O. sativa and relationship with rhizome expression. In:G.S. Khush, ed, Rice Genetics Ⅱ. International Rice Research Institute (IRRI). Los Banos, Philippines.1991, Pp. 729-730.
39. Ghesquiere A., Causse M., Linkage study between molecular markers and genes controlling the reproductive barrier in interspecific backcross between O. sativa and O. longistaminata. RGN. 1992,9:28-31.
40. Gizmawy I., Kigel J., Koller D., Ofir M., Initiation, orientation and early development of primary rhizomes in Sorghum halepense (L.) Pers. Annals of Botany.1985,55:343-350.
41. Glover J. D., The necessity and possibility of perennial grain production system. Renewable Agriculture and Food Systems.2005,20(1):1-4.
42. Glover J. D., Reganold J. P., Bell L. W., Borevitz J., Brummer E. C., Buckler E. S., Cox C. M.,T. S. Cox, Crews T. E., S. W. Culman, L. R. DeHaan, D. Eriksson, B. S. Gill, J. Holland, F. Hu, B. S. Hulke, A. M. H. Ibrahim, W. Jackson, S. S. Jones, S. C. Murray, A. H. Paterson, E. Ploschuk, E. J. Sacks, S. Snapp, D. Tao, D. L. Van Tassel, L. J. Wade, D. L. Wyse, Y. Xu., Increased Food and Ecosystem Security via Perennial Grains. Science.2010,328:638-1639.
43. Gutterson N., Zhang J.Z., Genomics applications to biotech traits:a revolution in progress. Curr. Opin. Plant Biol.2004,7:226-230.
44. Harmer S. L., Hogenesch J.B., Straume M., Chang H.S., Han B., Zhu T., Wang X., Kreps J.A., Kay S.A., Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science. 2000,290:2110-2113.
45. Hayward P. S., Beveridge C., Leyser O., Interactions between Auxin and Strigolactone in Shoot Branching Control. Plant Physiology.2009,151(1):400-412.
46. Hobo T., Suwabe K., Aya K., Suzuki G., Yano K., Ishimizu T., Fujita M., Kikuchi S., Hamada K., Miyano M., Fujioka T., Kaneko F., Kazama T., Mizuta Y., Takahashi H., Shiono K., Nakazono M., Tsutsumi N., Nagamura Y, Kurata N., Watanabe M., Matsuoka M., Various Spatiotemporal Expression Profiles of Anther-Expressed Genes in Rice. Plant Cell Physiol.2008, 49(10):1417-1428.
47. Hu F. Y., et al., Rice heterosis fixing by means of vegetative propagation from Oryza longisatminata. pp.95 In:abstracts of 4th International Symposium on Hybrid Rice. Mayl4-17, 2002a, Hanoi, Vietnam.
48. Hu F. Y., et al., Molecular mapping of two dominant complementary genes controlling rhizome presence using interspecific Oryza sativalO. longistaminata F2 population, pp.264 In:Abstracts of International Rice Congress. September 16-20,2002b, Beijing, China.
49. Hu F. Y., Tao D. Y., Sacks E., Fu B. Y., Xu P., Li J., Yang Y, McNally K., Khush G. S., Paterson A. H., and Li Z. K., Covergent evolution of perenniality in rice and sorghum. PNAS.2003,100(7): 4050-4054.
50. Huang Z., He G. C., Shu L. H., Li X. H., Zhang Q. F., Identification and mapping of two brown planthopper resistance genes in rice. Theor Appl Genet.2001,102:929-934.
51. Hwang Y. S., Karrer E. E., Thomas B. R., Chen L., Rodriguez R. L., Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation. Plant Mol Biol.1998, 36:331-341.
52. Imelda R., Soriano V, Schmit D. S., Brar J. C., Prot G., Reversat, Resistance to rice roo-knot nematode Meloidogyne graminicola identified in Oryza longistaminata and O. glaberrima. Nematology.1999, 1(4):395-398.
53. Inada S., Ohgishi M., Mayama T., Okada K., Sakai T., RPT2 Is a Signal Transducer Involved in Phototropic Response and Stomatal Opening by Association with Phototropin 1 in Arabidopsis thaliana. Plant Cell.2004,16(4):887-896.
54. International Rice Research Institute. IRRI toward 2000 and beyond. International Rice Research Institute, Manila,1988. Pp.66.
55. IRGSP, The map-based sequence of the rice genome. Nature 2005,436:793-800.
56. Iwakawa H., Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, Machida Y:The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 2002,43(5):467-78.
57. Jang C. S., Kamps T. L., Skinner D. N., Schulze S. R., Vencill W. K., Paterson A. H., Functional Classification, Genomic Organization, Putatively cis-Acting Regulatory Elements, and Relationship to Quantitative Trait Loci, of Sorghum Genes with Rhizome-Enriched Expression. Plant Physiology.2006,142:1148-1159.
58. Jiao Y., Tausta S. L., Gandotra N., Sun N., Liu T., Clay N. K., Ceserani T., Chen M., Ma L., Holford M., Zhang H. Y, Zhao H., Deng X. W., Nelson T., A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet.2009,41(2):258-63.
59. Jin J., Huang W., Gao J., Yang J., Shi M., Zhu M., Luo D., Xuan Lin H.. Genetic control of rice plant architecture under domestication. Nature Genetics. Nature Genetics 2008,40:1365-1369
60. Joseph D. C., Zhu T., Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems:practical consideration and perspectives. The plant journal.2006, 45:430-650.
61. Jung K. H., Dardick C., Bartley L. E., Cao P., Phetsom J., Canlas P., Seo Y. S., Shultz M., Ouyang S., Yuan Q. P., Frank B. C., Ly E., Zheng L., Jia Y, Hsia A. P., An K., Chou H. H., Rocke D., Lee G C., Schnable P. S., An G, Buell C. R., Ronald P. C., Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays:Evaluation of Gene-Redundancy. PLoS ONE.2008, 3(10):e3337.
62. Jung K. H., Han M. J., Lee Y. S., Kim Y. W., Hwang I., Kim M. J., Kim Y. K., Nahm B. H., An G, Rice Undeveloped Tapetuml is a major regulator of early tapetum development. Plant Cell.2005, 17:2705-2722.
63. Lescallett J., Chicurel M. E., Lipshutz R., Dalma D. D., Monitoring eukaryotic gene expression using oligonucleotide microarrays. Methods Mol. Biol.2004,258:71-94.
64. Kano Y., Yanai T., Tagiri A., Matsuoka M., A rice homeotic gene, OSH1, causes unusual phenotypes in transgenic tobacco. FEBS Letter.1993,334(3):365-368.
65. Kaur P., Mott I. W., Larson S. R., Bushman B. S., Kim R. W., Hernandez A. G., Liu L., Mikel M. A., Gene expression polymorphisms and ESTs associated with gravitropic response of subterranean branch meristem and growth habit in Leymus wildryes. Plant sciences.2008,175:330-338.
66. Khush G. S., Bacalango E., Ogawa T., A new gene for resistance to bacterial bilght from O. longistaminata. Rice Genet. Newsl.1990,7:121-122.
67. Kim W. Y., Hicks K. A., Somers D. E., Independent Roles for EARLY FLOWERING 3 and ZEITLUPE in the Control of Circadian Timing, Hypocotyl Length, and Flowering Time. Plant Physiology.2005,139:1557-1569.
68. Komatsu K., Maekawa M., Ujiie S., Satake Y., Furutani I., Okamoto H., Shimamoto K., Kyozuka J., LAX and SPA:Major regulators of shoot branching in rice. PNAS.2003,100(20):11765-11770.
69. Koyama T., Furutani M., Tasaka M., Takagi M., TCP Transcription Factors Control the Morphology of Shoot Lateral Organs via Negative Regulation of the Expression of Boundary-Specific Genes in Arabidopsis. The Plant Cell.2007,19:473-484.
70. Kusaba S., Kano M. Y., Matsuoka M., Tamaoki M., Sakamoto T., Yamaguchi I., Fukumoto M., Alteration of Hormone Levels in Transgenic Tobacco Plants Overexpressing the Rice Homeobox Gene OSH1. Plant Physiol.1998,116:471-476.
71. Kyozuka J., Konishi S., Nemoto K., Izawa T., Shimamoto K., Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation. PNAS.1998, 95:1979-1982.
72. Lander E., Gree P., Construction of Multilocus genetic Maps in Humans. Proc. Nat. Acad. Sci. USA. 1987,84:2363-2367.
73. Lee Y., Kende H., Expression of -Expansin and Expansin-Like Genes in Deepwater Rice. Plant Physiol.2002,130:1396-1405.
74. Li C., Potuschak T., Colon A., Gutierrez R. A., Doerner P., Arabidopsis TCP20 links regulation of growth and cell division control pathways. PNAS.2005,102(36):12978-83.
75. Li XY, Qian Q, Fu ZM, Wang YH, Xiong GS, Zeng DL, Wang XQ, Liu XF, Teng S, Hiroshi F, Yuan M, Luo D, Han B & Li JY:Control of tillering in rice. Nature 2003,422:618-621.
76. Lin H., Wang R., Qian Q., Yan M., Meng X., Fu Z., Yan C., Jiang B., Su Z., Li J., Wang Y, DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Plant Cell.2009,21:1512-1525.
77. Lockhart D. J., Dong H., Byrne M.C. et al., Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol.1996,14:1675-1680.
78. Lu B. R. et al., Preliminary studies on taxonomy and biosystematics of the AA genome Oryza Species (Poaceae). In:Jacobs S W L and J Everett(Eds.), Grasses:systematics and evolution. CSIRO,2000, p.51-58.
79. Lynn K., Fernandez A., Aida M., Sedbrook J., Tasaka M., Masson P., Barton M. K., The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. Development.1999,126:469-481.
80. Ma L., Chen C., Liu X., Jiao Y., Su N., Li L., Wang X., Cao M., Sun N., Zhang X., Bao J., Li J., Pedersen S., Bolund L., Zhao H., Yuan L., Wong G. K., Wang J., Deng X. W., Wang J., A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res.2005, 15:1274-1283.
81. Maekawa M., Identify cold tolerance gene9sO in rice at the booting stage. In:G. S. Khush, ed, Rice genetics Ⅲ. International Rice Research Institute, Los Banos, Philippines.1996, Pp.428-433.
82. Maekawa M., Inukai T., Rikiishi K., Matsuura T., and Govindaraj K. G, Inheritance of the rhizomatous traits in hybrid of Oryza longistaminata Chev. Et Roehr. And O. sativa L. SABRAO journal of breeding & Genetic.1998,30 (2):69-72.
83. Manly K. F., Cudnore E. H., New versions of MAP Manager Genetic mapping software. In Plant Genome IV abstract 1996, Pp105.
84. Maruyama N. A., Nakamura Y., Watanabe T. A., Inoue E., Yamaya T., Takahashi H., Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Plant J. 2005,42:305-314.
85. McCouch S. R., Abenes M. L., Angeles R., Khush G. S., Tanksley S. D., Molecular tagging of a recessive gene xa-5 for resistance to bacterial blight of rice. Rice Genet. Newsl.1991,8:143-145.
86. Mei R., Hubbell E., Bekiranov S. et al., Probe selection for high-density oligonucleotide arrays. Proc. Natl Acad. Sci. USA.2003,100:11237-11242.
87. Mizoguchi T., Coupand G., ZEITLUPE and FKF1:novel connections between flowering time and circadian clock control. Trends Plant Sci.2000,5(10):409-411.
88. Moussian B., Schoof H., Haecker A., Juergens G., Laux T., Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis. EMBO J.1998, 17:1799-1809.
89. Munekage Y., Hojo M., Meurer J., Endo T., Tasaka M., Shikanai T., PGR5 Is Involved in Cyclic Electron Flow around Photosystem I and Is Essential for Photoprotection in Arabidopsis. Cell. 2002,110(3):361-371.
90. Nayar N. M., Prevalence of self-incompatibility in Oryza bathii cheval., its bearing on the evolution of rice and related taxa. Genetica.1968,38:521-527.
91. Ohyama H., Zhang X., Kohno Y., Alevizos I., Posner M., Wong D.T., Todd R., Laser capturemicrodissection-generated target sample for high-density oligonucleotide array hybridization. Biotechniques.2000,29:530-536.
92. Oikawa T., Kyozuka J., Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice. The Plant Cell.2009,21:1095-1108.
93. Oka, H. I., Morishima H., Variation in the breeding system of a wild rice, Oryza perennis. Evolution.1967 21:249-258.
94. Panaud O., Chen X., McCouch S. R., Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice(Oryza sativa L.). Mol. Gen. Genet.1996, 252:597-607.
95. Paterson A. H., Bowers J. E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A. K., Chapman J., Feltus F. A., Gowik U., Grigoriev I. V., Lyons E., Maher C. A., Martis M., Narechania A., Otillar R. P., Penning B. W., Salamov A. A., Wang Y, Zhang L., Carpita N. C., Freeling M., Gingle A. R., Hash C. T., Keller B., Klein P., Kresovich S., McCann M. C., Ming R., Peterson D. G, Mehboob R., Ware D., Westhoff P., Mayer K. F., Messing J., Rokhsar D. S., The Sorghum bicolor genome and the diversification of grasses. Nature.2009,457(7229):551-556.
96. Paterson A. H., Schertz K. F., Lin Y. R., Liu S. C., Chang Y. L., The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers. Proc Natl Acad Sci USA.1995,92:6127-6131.
97. Planchais S., Perennes C., Glab N., Mironov V., Inze D., Bergounioux, Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath; CycB1; 1 transcription and identification of putative regulatory proteins. Plant Mol Biol.2002,50:111-127.
98. Plesch G., Ehrhardt T., Mueller R. B., Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression. Plant J.2001,28:455-464.
99. Ramdas L., Cogdell D. E., Jia J. Y, Taylor E. E., Dunmire V. R., Hu L., Hamilton S.R., Zhang W., Improving signal intensities for genes with low-expression on oligonucleotide microarrays. BMC Genomics.2004,5:35.
100. Sacks E., et al., Developing perennial upland rice Ⅱ:Field performance of S1 families from an intermated Oryza sativa/O. longistaminata population. Crop Sci.2003.43:129-134.
101. Sacks E., et al., Clonal performance of perennial Oryza sativa/O. rufipogon selections and their combining ability with O. sativa cultivars for survival, stolon production and yield. Field Crops Research.2007,100:155-167.
102. Sacks E. J., Dhanapala M. P., Tao D. Y., St. Cruz M. T., Sallan R., Breeding for perennial growth and fertility in an Oryza sativa/O. longistaminata population. Field Crop Research 2006,95(1): 39-48.
103. Sacks E. J., Schmit V., McNally K. L., Sta Cruz M. T., Fertility in an interspecific rice population and its effect on selection for rhizome length. Field Crops Research.2006,95(1):30-38.
104. Sato Y., Hong S. K., Tagiri A., Kitano H., Yamamoto N., Nagato Y., and Matsuoka M., A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis. PNAS.1996,93(15):8117-8122.
105. Schena M., Shalon D., Davis R.W., Brown P. O., Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science.1995,270:467-470.
106. Schmit V., Improving sustainability in the uplands through the development of a perennial upland rice. In:Piggin C., Courtois B., and Schmit V, ed. Upland Rice Research in Partnership, Proceedings of the Upland Rice Consortium Workshop; 4-13 January 1996; Padang, Indonesia. P265-273.
107. Schmid M., Davison T.S., Henz S.R., Pape U.J., Dema, M., Vingron M., Scholkopf B., Weigel D., Lohmann J. U., A gene expression map of Arabidopsis thaliana development. Nat. Genet.2005, 37:501-506.
108. Shimono M., Sugano S., Nakayama A., Jiang C. J., Ono K., Toki S., Takatsuji H., Rice WRKY45 Plays a Crucial Role in Benzothiadiazole-Inducible Blast Resistance. Plant Cell.2007, 19:2064-2076.
109. Song Y., Wang L., Xiong L., Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta.2009, 229(3):577-91.
110. Song Y. L., Wang G. L., Chen L. L., Kim H., Pi L. Y, Holsten T., Garder J., Wang B., Zhai W. X., Zhu L. H., Fauquet Z., Roulnd P., A receptor kinas-like protein encorded by the rice disease resistance gene,Xa21. Science.1995,279:10884-1086.
111. Sreenivasulu N., Radchuk V, Strickert M., Miersch O., Weschke W., Wobus U., Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA-regulated maturation in developing barley seeds. Plant J.2006,47(2):310-27.
112. Stalker H. T., Utilization of wild species for crop improvement. Advances in Agronomy,1980, 33:111-147.
113. Su N., He K., Jiao Y., Chen C., Zhou J., Li L., Bai S., Li X., Deng X.W., Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice. Plant Mol Biol.2007,63(3):337-49.
114. Sun B. G., Firtel R. A., A Regulator of G Protein Signaling-containing Kinase Is Important for Chemotaxis and Multicellular Development in Dictyostelium. Mol Biol Cell.2003, 14(4):1727-1743.
115. Takeda T., Suwa Y., Suzuki M., Kitano H., Ueguchi T. M., Ashikari M., Matsuoka M., Ueguchi C., The OsTBl gene negatively regulates lateral branching in rice. Plant J.2003,33:513-520.
116. Tan L., Li X., Liu F., Sun X., Li C., Hu Z., Fu Y., Cai H., Wang X., Xie D., Sun C., Control of a key transition from prostrate to erect growth in rice domestication. Nature Genetics.2008.
117. Tao D., Hu F., Yang Y, Xu P., Li J., Wen G, Sacks E., McNally K., Sripichitt P., Rhizomatous individual was obtained from interspecific BC2F1 progenies between Oryza sativa and Oryza longistaminata. Rice Genet Newsl.2001,18:11-13.
118. Tao D., Hu F., Yang F., Xu P., Li J., Sacks E., McNally K., Scripichitt P., Rhizomatous individual was obtained from inerspecific BC1F1 progenies between Oryza sativa and O. longistaminata. The abstract of International Rice Genetic Symposium.22-27 October 2000. International Rice Research Institute, Los Bnaos, Philippines.
119. Tao D., Hu F., Sacks E., McNally K., et al., Several lines with Rhizomatous were obtained from interspecific BC2F1 progenies of RD23/O.longistaminata backcrossed to RD23. Division Seminars of PBGB, International Rice Research Institute, Los Banos, Philippines,2001.
120. Tapia R., Garcia B., Dubrovsky J. G, Garay A., Perez R., Kim S. H., Acevedo F., Pelaz S., Alvarez E. R., An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis. Plant physiology.2008,146(3):1182-92.
121. Thomas S. G., Phillips A. L., Hedden P., Molecular cloning and functional expression of gibberellin 2-oxidases, multifunctional enzymes involved in gibberellin deactivation. PNAS.1999, 96:4698-4703.
122. Tian C., Muto H., Higuchi K., Matamura T., Tatematsu K., Koshiba T., Yamamoto K. T., Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J.2004,40(3):333-43.
123. Vaughan D. A., The wild relatives of Rice. A genetic resources handbook, IRRI, Manila, Philippines 1994, Pp46-47.
124. Walia H., Wilson C., Condamine P., Liu X., Ismail A. M., Zeng L., Wanamaker S. I., Mandal J., Xu J., Cui X., Close T. J., Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol.2005,139:822-835.
125. Wang Z., Xie W. Q., Chi F., Li C. F., Identification of non-specific lipid transfer protein-1 as a calmodulin-binding protein in Arabidopsis. FEBS Letter.2005,579(7):1683-1687.
126. Wangoner P., Perennial grain development:past efforts and potential for the future. Critical reviews in Plant Sciences.1990,9(5):381-408.
127. Woo Y., Affourtit J., Daigle S., Viale A., Johnson K., Naggert J. Churchill G., A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms. J. Biomol. Tech.2004,15:276-284.
128. Xiu L. Q., Breeding for perennial hybrid rice. Division Seminars of Plant Breeding, Genetics and Biochemistry; International Rice Research Institute, Manila, Philippines.1995.
129. Yanagisawa S., The Dof family of plant transcription factors. Trends in Plant Science.2002,7(12): 555-560.
130. Yeats T. H., Rose J. K., The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs). Protein Sci.2008,17:191-198.
131. Zhang S., Hu W., Wang L., Lin C., Cong B., Sun C., Luo D., TFL1/CEN-like genes control intercalary meristem activity and phase transition in rice. Plant Sciences.2005,168(6):1393-1408.
132. Zhao Y., Christensen S. K., Fankhauser C., Cashman J. R., Cohen J. D., Weigel D., Chory J., A Role for Flavin Monooxygenase-Like Enzymes in Auxin Biosynthesis. Science.2001, 291(5502):306-309.
133. Zhou J., Wang X., Jiao Y, Qin Y, Liu X., He K., Chen C., Ma L., Wang J., Xiong L., Zhang Q., Fan L., Deng X. W., Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol.2007,63(5):591-608.
134. Zhu T., Global analysis of gene expression using GeneChip microarrays. Curr. Opin. Plant Biol. 2003,8:425.
135. www.gramene.org
136. www.dna.go.jp/place
137. http://faodo.wi.mit.edu
138. http://www.phytozome.net/