大黄鱼SSR遗传连锁图谱的构建及生长相关性状的QTL定位
|
摘要
采用FIASCO方法构建大黄鱼(AC)n微卫星富集文库,阳性克隆率为66.4%,总共得到631个含有微卫星的序列,设计了微卫星引物413对。用其中11对引物分析了官井洋野生群体(N=30)和宁波养殖群体(N=38)的遗传多样性,野生群体的平均观测杂合度为0.648,平均期望杂合度0.803,平均等位基因数为8.5,平均多态信息含量值为0.764。养殖群体中平均观测杂合度为0.708,平均期望杂合度为0.693,平均等位基因数为4.5。结果表明大黄鱼野生群体和养殖群体的遗传多样性都较低。
从NCBI数据库中获得1205条大黄鱼EST序列,其中48条含有微卫星,利用30个官井洋野生大黄鱼个体检测48个位点的多态性,从中筛选出16个多态性的微卫星标记,这些位点在官井洋野群体中的等位基因数为3-11,多态信息含量为0.115～0.866。16个EST-SSRs位点在小黄鱼、黑鳃梅童鱼、棘头梅童鱼、白姑鱼和皮氏叫姑鱼中能够通用的引物对分别为14、12、11、7和6对。大黄鱼微卫星引物在近缘物种的通用性及扩增出的多态性位点比例随着物种间遗传距离的增加而呈下降。
以来自不同群体、遗传差异较大4尾雌鱼与4尾雄鱼为亲本,构建了1个4♀×4♂混合繁育群体,养殖到成鱼阶段,借助微卫星标记进行亲子鉴定重建群体的系谱关系,从中选择2个同父异母的半同胞家系为作图群体,利用LINKMFEX软件分别构建了2个家系大黄鱼微卫星标记连锁图谱,分别含有115个和224个标记。借助LINKMFEX软件的MERGE程序进行图谱整合,整合的大黄鱼遗传连锁图谱上共有251个微卫星标记,其中包括47个EST-SSR标记。雌性整合图谱含有206个标记,覆盖24个连锁群,每个连锁群的平均标记数为8.6个,图谱总长度为827.9 cM,标记间的平均间隔为4.5 cM,图谱的覆盖率为76.5%；雄性整合图谱含有179个标记,覆盖24个连锁群,每个连锁群的平均标记数为7.5个,图谱总长度为1000.4 cM,标记间的平均间隔为6.5 cM,图谱的覆盖率71.5%。同一连锁群上相同位点间的重组率存在雌雄不一现象,总体上是雌性重组率高于雄性,雌性亲本与雄性亲本重组率的比值从0.1到3.6,平均为1.3：1。
利用构建的微卫星标记连锁图谱,采用MapQTL 5.0软件对1个作图家系(CC家系)的全长、体长、体高和体重性状进行了QTL定位分析,这4个性状的表型相关均达到极显著水平(P<0.001),Pearson相关系数从0.955至0.991。总共定位了26个QTL,包括7个全长、6个体长、7个体高和6个体重QTL,成簇分布于LG1、LG2、LG7、LG8、LG10、LG11、LG17、LG23上。这些QTL在大黄鱼整合图谱上存在成簇分布现象,说明这些生长相关的性状可能具有共同的遗传基础。单个QTL可解释的表型变异从6.5%到73.0%。用ANOVA分析QTL临近标记不同基因型个体表型值的差异,发现了11个位点各基因型个体间表型值存在显著或极显著差异。
We constructed an (AC)n-microsatellite-enriched library for large yellow croaker Pseudosciaena crocea (Richardson 1846) using the method of FIASCO. The rate of positive clones reached 66.4%,631 sequences containing microsatellite were obtained, and 413 primer pairs were designed. Eleven primer pairs were genotyped on 30 P. crocea individuals from Guangjingyang wild population (WP) in Fujian province and 38 individuals from Ningbo cultured population in Zhejiang province (CP). In WP, the average observed and expected heterozygosoties was 0.648 and 0.803, respectively, the average number of allele and polymorphism information content was 8.5 and 0.764, respectively. In CP, the average observed heterozygosoty, expected heterozygosoty and number of allele was 0.708,0.693 and 4.5, respectively. These results indicated that both WP and CP have low genetic diversity.
Simple sequence repeat (SSR) markers were also obtained for the large yellow croaker Pseudosciaena crocea using 1205 expressed sequences tags (ESTs) from the NCBI database. The loci were screened in 30 specimens from a wild population in China. Sixteen of 48 loci were polymorphic, and they were amplified with the number of alleles per locus ranging from 3 to 11. Polymorphic information content ranged from 0.115 to 0.866. The number of successfully amplified loci in Pseudosciaena polyactis, Collichthys niveatus, Collichthys lucidus, Argyrosomus argentatus and Johnius grypotus was 14,12,11,7, and 6, respectively. These results showed that the amplification probability should correlate with their phylogenetic proximity to P. crocea.
A mixed group of large yellow croaker Pseudosciaena crocea was constructed, whose parents (4♀×4♂) came from different populations. After they grew up to adults, parental allocation was conducted by using microsatellite markers. Two half-sib families were selected as mapping families to construct the genetic linkage maps of microsatellite markers using LINKMFEX software. The number of segregation makers was 115 and 224 in WC family and in CC family, respectively. Using the module MERGE of LINMFEX software, new linkage group orders were built for preexisting linkage group orders that were obtained from the two full-sib families. A total of 251 microsatellite markers were integrated into linkage maps, in which contained 47 EST-SSR markers. The composite female map contained 206 markers in 24 linkage groups, with an average of 8.6 markers per group, spanning 827.9 cM with an average interval 4.5 cM. The coverage of female map was 76.5%. For the composite male map,179 markers were assigned in 24 linkage groups, with an average of 7.5 markers per group. The total length of male map was 1000.4 cM with an average interval of 6.5 cM. The coverage of male map was 71.5%. The recombination frequency was greater in the female than that in the male with a female to male recombination frequency ratio of 0.1 to 3.6, with the average of 1.3:1.
The location and effects of QTLs were estimated for total length, body length, body weight, body height trait using MapQTL 5.0 based on the composite maps of large yellow croaker. A total of 26 putative QTLs were located, including 7 for total length,6 for body length,7 for body height, and 6 for body weight. These QTLs were mapped in LG2, LG7, LGI0, LG11, LG17, and LG23. They were clustered on the composite maps of large yellow croaker, which means these growth-related traits shared the common genetic elements. The phenotypic variation explained by the QTLs for growth-related traits ranged from 6.5% to 73.0%. The association between phenotypic traits and genotypes of four allelic combinations from markers nearest to QTL was analyzed by ANOVA method, and 11 significant QTLs were found.
从NCBI数据库中获得1205条大黄鱼EST序列,其中48条含有微卫星,利用30个官井洋野生大黄鱼个体检测48个位点的多态性,从中筛选出16个多态性的微卫星标记,这些位点在官井洋野群体中的等位基因数为3-11,多态信息含量为0.115～0.866。16个EST-SSRs位点在小黄鱼、黑鳃梅童鱼、棘头梅童鱼、白姑鱼和皮氏叫姑鱼中能够通用的引物对分别为14、12、11、7和6对。大黄鱼微卫星引物在近缘物种的通用性及扩增出的多态性位点比例随着物种间遗传距离的增加而呈下降。
以来自不同群体、遗传差异较大4尾雌鱼与4尾雄鱼为亲本,构建了1个4♀×4♂混合繁育群体,养殖到成鱼阶段,借助微卫星标记进行亲子鉴定重建群体的系谱关系,从中选择2个同父异母的半同胞家系为作图群体,利用LINKMFEX软件分别构建了2个家系大黄鱼微卫星标记连锁图谱,分别含有115个和224个标记。借助LINKMFEX软件的MERGE程序进行图谱整合,整合的大黄鱼遗传连锁图谱上共有251个微卫星标记,其中包括47个EST-SSR标记。雌性整合图谱含有206个标记,覆盖24个连锁群,每个连锁群的平均标记数为8.6个,图谱总长度为827.9 cM,标记间的平均间隔为4.5 cM,图谱的覆盖率为76.5%；雄性整合图谱含有179个标记,覆盖24个连锁群,每个连锁群的平均标记数为7.5个,图谱总长度为1000.4 cM,标记间的平均间隔为6.5 cM,图谱的覆盖率71.5%。同一连锁群上相同位点间的重组率存在雌雄不一现象,总体上是雌性重组率高于雄性,雌性亲本与雄性亲本重组率的比值从0.1到3.6,平均为1.3：1。
利用构建的微卫星标记连锁图谱,采用MapQTL 5.0软件对1个作图家系(CC家系)的全长、体长、体高和体重性状进行了QTL定位分析,这4个性状的表型相关均达到极显著水平(P<0.001),Pearson相关系数从0.955至0.991。总共定位了26个QTL,包括7个全长、6个体长、7个体高和6个体重QTL,成簇分布于LG1、LG2、LG7、LG8、LG10、LG11、LG17、LG23上。这些QTL在大黄鱼整合图谱上存在成簇分布现象,说明这些生长相关的性状可能具有共同的遗传基础。单个QTL可解释的表型变异从6.5%到73.0%。用ANOVA分析QTL临近标记不同基因型个体表型值的差异,发现了11个位点各基因型个体间表型值存在显著或极显著差异。
We constructed an (AC)n-microsatellite-enriched library for large yellow croaker Pseudosciaena crocea (Richardson 1846) using the method of FIASCO. The rate of positive clones reached 66.4%,631 sequences containing microsatellite were obtained, and 413 primer pairs were designed. Eleven primer pairs were genotyped on 30 P. crocea individuals from Guangjingyang wild population (WP) in Fujian province and 38 individuals from Ningbo cultured population in Zhejiang province (CP). In WP, the average observed and expected heterozygosoties was 0.648 and 0.803, respectively, the average number of allele and polymorphism information content was 8.5 and 0.764, respectively. In CP, the average observed heterozygosoty, expected heterozygosoty and number of allele was 0.708,0.693 and 4.5, respectively. These results indicated that both WP and CP have low genetic diversity.
Simple sequence repeat (SSR) markers were also obtained for the large yellow croaker Pseudosciaena crocea using 1205 expressed sequences tags (ESTs) from the NCBI database. The loci were screened in 30 specimens from a wild population in China. Sixteen of 48 loci were polymorphic, and they were amplified with the number of alleles per locus ranging from 3 to 11. Polymorphic information content ranged from 0.115 to 0.866. The number of successfully amplified loci in Pseudosciaena polyactis, Collichthys niveatus, Collichthys lucidus, Argyrosomus argentatus and Johnius grypotus was 14,12,11,7, and 6, respectively. These results showed that the amplification probability should correlate with their phylogenetic proximity to P. crocea.
A mixed group of large yellow croaker Pseudosciaena crocea was constructed, whose parents (4♀×4♂) came from different populations. After they grew up to adults, parental allocation was conducted by using microsatellite markers. Two half-sib families were selected as mapping families to construct the genetic linkage maps of microsatellite markers using LINKMFEX software. The number of segregation makers was 115 and 224 in WC family and in CC family, respectively. Using the module MERGE of LINMFEX software, new linkage group orders were built for preexisting linkage group orders that were obtained from the two full-sib families. A total of 251 microsatellite markers were integrated into linkage maps, in which contained 47 EST-SSR markers. The composite female map contained 206 markers in 24 linkage groups, with an average of 8.6 markers per group, spanning 827.9 cM with an average interval 4.5 cM. The coverage of female map was 76.5%. For the composite male map,179 markers were assigned in 24 linkage groups, with an average of 7.5 markers per group. The total length of male map was 1000.4 cM with an average interval of 6.5 cM. The coverage of male map was 71.5%. The recombination frequency was greater in the female than that in the male with a female to male recombination frequency ratio of 0.1 to 3.6, with the average of 1.3:1.
The location and effects of QTLs were estimated for total length, body length, body weight, body height trait using MapQTL 5.0 based on the composite maps of large yellow croaker. A total of 26 putative QTLs were located, including 7 for total length,6 for body length,7 for body height, and 6 for body weight. These QTLs were mapped in LG2, LG7, LGI0, LG11, LG17, and LG23. They were clustered on the composite maps of large yellow croaker, which means these growth-related traits shared the common genetic elements. The phenotypic variation explained by the QTLs for growth-related traits ranged from 6.5% to 73.0%. The association between phenotypic traits and genotypes of four allelic combinations from markers nearest to QTL was analyzed by ANOVA method, and 11 significant QTLs were found.
引文
常玉梅,王文文,徐万土,等.人工繁育大黄鱼群体F2及F3遗传差异分析[J].海洋与湖沼,2009,40(4)：414-422.
陈莉,邓文汉,卢菀华,等.大黄鱼生长激素基因的克隆与表达[J].福州大学学报(自然科学版),2004,32(6)：754-758.
陈卫忠.东海区主要经济鱼类资源近况[J].海洋渔业,1994,16(4)：163-167.
陈兆波.分子标记的种类及其在作物遗传育种中的应用[J].现代生物医学进展,2009,9(11)：2179-2148
丁少雄.分子标记在大黄鱼(P.crocea)遗传育种及石首鱼科(Sciaenidae)分子系统进化研究中的应用[D].2001.厦门大学博士学位论文.
丁诗华,黄丽英,张海琪,徐晓林.大黄鱼(Pseudosciaena crocea)岱衢洋选育群体和官井洋养殖群体的遗传差异分析[J].海洋与湖沼,2006,37(1)：41-46.
董秋芬,刘楚吾,郭昱嵩,刘丽,吴勇.9种石斑鱼遗传多样性和系统发生关系的微卫星分析[J].遗传,2007,29(7)：837-843.
杜皓月,杨凯,王凤敏.DNA分子标记技术在水产养殖中的研究应用[J].河北渔业,2009,(5)：38-43.
方宣钧,吴为人,唐纪良.作物DNA标记辅助育种[M].北京：科学出版社,2001.
葛芹玉.白鲢与团头鲂遗传连锁图谱的构建[D].2002.南京农业大学硕士学位论文.
郭葳.大黄鱼与银鲫微卫星标记的筛选开发及群体遗传分析[D].2007.中国科学院研究生院博士学位论文.
郝君,孙效文,梁利群等.大黄鱼微卫星标记的富集与筛选[J],中国水产科学,2006,13(5)：762-766.
赫崇波,周遵春,刘卫东.斑点叉尾的基因组研究[J].水产科学,2005,24(1)：38-40.
黄勤,陈曦,杨金先,等.福建养殖大黄鱼(Pseudosciaena crocea) RAPD标记及多态性调查[J].福建农业学报,2007,22(2)：130-135.
江树勋,马鸿媚,邓文汉,等.大黄鱼生长激素基因的分离及序列测定[J].生物工程进展,2002,22(2)：88-90.
景润春,黄青阳,朱英国.图未克隆技术在分离植物基因中的应用[J].遗传,2000,22(3)：180.
李宏俊.海湾扇贝微卫星标记的开发及遗传连锁图谱的构建[D].2009.中国科学院博士学位论文.
李莉.长牡蛎的分子标记筛选和遗传连锁图谱构建[D].2003.中国科学院博士研究生学位论文.
李明云,张海琪,竺俊全,等.象山港养殖大黄鱼同工酶的分析[J].海洋学报,2003,25(2)：231-236.
李明云,朱俊杰,邬勇,等.大黄鱼线粒体DNA的限制性内切酶图谱[J].科技通报,2006,27(4)：456-461.
李齐发,赵兴波,罗晓林,等.牦牛基因组微卫星富集文库的构建与分析[J].遗传学报,2004,31(5)：489-494.
李益云.大黄鱼雌核发育的诱导及遗传分析[D].2007.集美大学硕士学位论文.
林红,夏德全,杨弘.遗传连锁图谱及其在鱼类遗传育种中的应用[J].中国水产科学,2000,7(1)：95-98.
林能锋,苏永全,丁少雄,等.大黄鱼微卫星标记引物在石首鱼科几个近缘种中的通用性研究[J].中国水产科学,2008,15(2)：237-243.
林琪,吴建绍.三倍体大黄鱼的诱导及其对生长、性腺发育的影响[J].水产学报,2004,28(6)：728-732.
林琪,吴建绍,曾志南.静水压休克诱导大黄鱼三倍体[J].海洋科学,2001,(9)：6-9.
梁俊,李道季,卢莉琼.日本鳗鲡(Anguilla japonica)和欧洲鳗鲡(A.anguilla)的微卫星差异[J].海洋与湖沼,2003,34(4)：414-421.
刘颖,蔡明夷,刘贤德,等.大黄鱼♀与黄姑鱼♂杂交F1家系出孵仔鱼的AFLP分析[J].水产学报,2010,34(6)：672-678.
骆蒙,贾继增.植物基因组表达序列标签(EST)计划研究进展[J].生物化学与生物物理进展,2001,28(4)：494-497.
马梁,王军,陈武各,等.(?)状黄姑鱼与大黄鱼人工杂交子代的胚胎发育[J].厦门大学学报(自然科学版),2002,41(3)：378-381.
孟庆闻,缪学祖,张菡初,等.鱼类学(上册)[M].北京：农业出版社,1960.
蒙子宁,庄志猛,丁少雄,等.中国近海8种石首鱼类的线粒体16S rRNA基因序列变异及其分子系统进化[J].自然科学进展,2004,14(5)：514-521.
全成干,王军.大黄鱼养殖群体遗传多样性的同工酶[J].厦门大学学报：自然科学版,1999,38(4)：584-588.
任鹏.杂色鲍和大黄鱼微卫星标记的筛选[D].集美大学硕士学位论文,2008.
盛岩,郑蔚虹,裴克全,马克平.微卫星标记在种群生物学研究中的应用[J].植物生态学报,2002,26(增刊)：119-126.
孙效文,梁利群.鲤鱼的遗传连锁图谱(初报)[J].中国水产科学,2000,7(1)：1-5.
谭远德,万春玲.不同作图群体对显隐性分子标记位点的作图效率[J].生命科学研究,2000,4(3)：202-209.
谭杰,孙慧玲,刘萍,杨爱国,燕敬平,等.3个仿刺参地理种群遗传变异的微卫星DNA分析[J].水产学报,2007,31(4)：437-442.
王德祥.大黄鱼不同群体分子标记及品种改良的研究[D].2004.厦门大学博士学位论文.
王军,全成干,苏永全,等.官井洋野生与养殖大黄鱼同工酶的研究[J].海洋科学,2001,25(6)：39-41.
王军,王德祥,尤颖哲,等.大黄鱼三倍体诱导的初步研究[J].厦门大学学报(自然科学版),2001,40(4)：927-930.
王玲玲.栉孔扇贝和海湾扇贝遗传连锁图谱的构建研究[D].2005.中国科学院博士学位论文.
王师.栉孔扇贝遗传图谱的构建及重复元件的进化分析[D].2007.中国海洋大学博士学位论文.
王伟继,孔杰,董世瑞,等.中国明对虾AFLP分子标记遗传连锁图谱的构建[J].动物学报,2006,52(3)：575-584.
王小平.闽东大黄鱼养殖业现状及其发展对策[J].福建水产,2000,(2)：52-57.
王晓清.大黄鱼DNA分子标记技术及其在遗传育种中应用研究[D].2007.湖南农业大学博士学位论文.
王晓清,王志勇,柳小春,等.人工雌核发育大黄鱼的AFLP分析[J].海洋与湖沼,2007,1(38)：34-40.
王晓清,王志勇,谢中国,等.大黄鱼(♀)与(?)(♂)杂交杂交的遗传分析[J].水产学报,2008,32(1)：51-57.
王志勇,王艺磊,林利民,等.福建官井洋大黄鱼AFIP指纹多态性的研究[J].中国水产科学,2002,9(3)：198-203.
王志勇,谢芳靖,刘家富.大黄鱼雌核发育二倍体诱导方法[P].中国,发明专利,1792347,2006.
吴清明.大黄鱼同质雌核发育的诱导及遗传分析[D].2009.集美大学硕士学位论文.
谢中国.大黄鱼(♀)与(?)鱼(♂)杂交及其子代的遗传分析[D].2006.湖南农业大学硕士学位论文.
许建和,尤锋,吴雄飞,等.冷休克法和静水压法人工诱导大黄鱼三倍体[J].中国水产科学,2006,13(2)：206-210.
徐云碧,朱丽煌,分子数量遗传学[M].北京：中国农业出版社,1994.
姚红伟,袁霞,付鑫.AFLP分子标记技术及其在水产动物中的应用[J].现代渔业信息.2009,24(7)：22-24.
叶小军,王志勇,刘贤德,等.大黄鱼连续两代雌核发育群体的微卫星标记分析[J].水生生物学报,2010,34(1)：144-151.
岳志芹,孔杰,戴继勋.水产动物遗传连锁图谱的研究现状及应用展望[J].遗传,2004,26(1)：97-102.
赵广泰.大黄鱼“闽优1号”选育群体遗传结构分析及生长相关性状的遗传参数估计[D].2010.集美大学硕士学位论文.
赵广泰,刘贤德, 王志勇,等.大黄鱼连续4代选育群体遗传多样性与遗传结构的微卫星分析[J].水产学报,2010,34(4)：500-508.
赵寿元,乔守怡.现代遗传学[M].北京：高等教育出版社,2003,53-155.
张彩兰,刘家富,李雅琅,等.福建省大黄鱼养殖现状分析与对策[J].上海水产大学学报,2001,11(1)：77-83.
张天时,刘萍,孟宪红,王伟继,孔杰,等.不同对虾种问共用微卫星DNA引物的研究[J].高技术通讯,2003,13(11)：80-85.
郑春静.温度休克诱导大黄鱼四倍体的初步研究[J].中国水产,2004,3：87-89.
周涵韬,郑文竹,周以侹,夏涛.不同作物间共用SSR引物的初步研究[J].厦门大学学报,2002,41(1)：89-93
周旋.大黄鱼部分脂肪代谢相关基因的克隆及其表达分析[D].2009.集美大学硕士学位论文.
邹曙明,李思发,赵金良,等.福建官井洋海区大黄鱼的染色体核型分析[J].上海水产大学学报,2003,12(2)：179-181.
邹喻萍,葛颂,王晓东.系统与进化植物学中的分子标记[M].北京：科学出版社,2001，1-139.
朱员鼎,罗云林,伍汉霖.中国石首鱼分类系统的研究和新科新属的叙述[M].上海：上海科技出版社,1963.
Agresti J J, Seki S, Cnaaani A, et al. Breeding new strains of tilapia:development of an artificial center of origin and linkage map based on AFLP and microsatellite loci[J]. Aquaculture,2000,185:43-56.
An H S,Cho K C, Park J Y. Eleven new highly polymorphic microsatellite loci in the yellow croaker, Pseudosciaena crocea[J]. Mol Ecol Notes,2005,5:866-868
Arnheim N, Strange C, and Erlich H. Use of pooled DNA samples to detect linkage disequilibrunof polyrmrphic restriction fragment and human disease [J]. Proc Nat Acad Sci USA,1985,82:6970-6974.
Banks M A, Blouin M S, Baldwin B A, et al. Isolation and inheritance of novel microsatellites in Chinook salmon (Oncorhymchus tschawyscha)[J]. J Heredity, 1999,90:281-288.
Barbazuk W B, Korf I, Kadavi C, et al. The syntenic relationship of the zebrafish and human genomes[J]. Genome Res,2000,10:1351-1358.
Barendse W, Armitage S M, Kossarek LM. etc. A genetic linkage map of the bovine genome[J]. Nat Genet,1994,6:227-235.
Beacham T D, Lapointe M, Candy J R, et al. DNA in action:rapid application of DNA variation to sockeye salmon fisheries management[J]. Conservation Genetics,2004,5:411-416.
Beavis W D. The power and deceit of QTL experiments:lessons from comparitive QTL studies, in Proceedings of the Forty-Ninth Annual Corn & Sorghum Industry Research Conference. American Seed Trade Association,1994, Washington, DC. p.250-266.
Beckman J S, and Weber J L. Survey of human and rat microsatellites[J]. Genomics, 1992,12:627-631.
Bentzen P, Olsen J, McLean J, et al. Kinship analysis of Pacific salmon:insights into mating, homing, and timing of reproduction[J]. Journal of Heredity,2001,92: 127.
Bernardi G, Mounchiroud D, Gautier C, et al. Compositional patterns in vertebrate genomes:Conservation and charge in evolution[J]. Mol Evol,1988,28:7-18.
Bernardi G, Olofsson B, Filipski J, et al. The mosaic genome of war-blooded vertebrates[J]. Science,1985,228:953-958.
Bink M, Sandbrink J M, Jansen R C. Linkage and QTL mapping in related full sib families:a case study in potato [J]. Journal of Agricultual Genomics 2001,2: 1-14.
Boudry P, Collet B, Cornette F, et al. High variance in reproductive success of the Pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses[J]. Aquaculture.2002,204:283-296.
Brenner S, Elgar G, Sandford R, et al. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome [J]. Nature,1993,366:265-268.
Burr B, and Burr F. A reconbinant inbreds for molecular mapping in maize theoretical and pratical consolidations [J]. Trends Genet,1991,7 (2):55-60.
Callen D F, Thimpson A D, Shen Y, et al. Incidence and origin of "null" alleles in the (AC)n microsatellite markers[J]. Am J Hum Genet,1993,52:922-927.
Casasoli M, Mattioni C, Cherubini M. et al. A genetic linkage map of European chestnut (Castanea sativa Mill.) based on RAPD, ISSR and isozyme markers[J]. Theor Appl Genet,2001,102:1190-1199.
Castro J, Bouza C, Presa P, et al. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci[J]. Aquaculture,2004, 242:119-135.
Chakravarti A, Lasher L K, Reefer J E. A maximum likelihood method for estimating genome length using genetic linkage data[J]. Genetics,1991,128:175-182.
Chang Y M, Ding L, Wang W W, et al. Isolation and characterization of 11 microsatellite markers for the large yellow croaker, Pseudosciaena crocea[J]. Conserv Genet,2009,10:1405-1408
Chasman D, Adams R M. Predicting the functional consequences of non-synonym single nucleotide polymorphism:structurebased assessment of amino acid variation[J]. J Mol Biol,2001,307:683-706.
Chen S L, Liu Y G, Xu M Y, et al. Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream(Chrysophrys major) and cross-species amplification[J]. Mol Ecol Notes,2005,5:215-217.
Chistiakov D A, Hellemans B, Filip A M. Microsatellites and their genomic distribution, evolution, function and applications:A review with special reference to fish genetics[J]. Aquaculture,2006,255:1-29.
Chistiakov D A, Hellemans B, Haley C S, et al. A microsatellite linkage map of the European sea bass Dicentrarchus labrax L[J]. Genetics,2005,170:1821-1826.
Cnaani A, Hallerman M, Ron E M, et al. Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size,in an F2 tilapia hybrid[J]. Aquaculture,2003,223:117-128.
Cnaani A, Ron M, Hulata G, et al. Fishing in silico:searching for tilapia genes using sequences of microsatellite DNA markers[J]. Anim Genet,2002,33:474-476.
Coimbra M R, Kobayashi K, Koretsugu O, et al. A genetic linkage map of the Japanese flounder, Paralichtys olivaceus[J]. Aquaculture,2003,220:203-218.
Corujo M, Blanco G, Vazquez E, et al. Genetic structure of northwestern Spanish brown trout (Salmo trutta L.) populations, differences between microsatellite and allozyme loci [J].Hereditas,2004,141:258-271.
Crawford A M, and Cuthbertson R P. Mutations in sheep microsatellites [J]. Genome Res,1996,6:876-879.
Cui Z, Liu Y, Li C P, et al. The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae):Unusual features of its control region and the phylogenetic position of the Sciaenidae[J]. Gene,2009, 432:33-43.
Dear P.H. Genome Mapping, A practical approach[M]. New York:Oxford University Press,1997.
Dekkers J C M, and Hospital F. Multifactoral genetics:the use of molecular genetics in the improvement of agricultural populations[J]. Nat Rev Genet,2002,3: 22-32.
Dietrich W F, Miller J, O'Connor T J, etc. A comprehensive genetic map of the mouse genome[J]. Nature,1996,380:149-152.
Diez-Tascon C, Bayon Y, Arranz J J, et al. Mapping quantitative trait loci for milk production traits on ovine chromosome 6[J]. Journal of Dairy Research,2001,68: 389-397.
Edwards Y J, Elgar G, Clark M S, et al. The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses [J]. J Mol Biol, 1998,278:843-854.
Ellegren H. Microsatellite mutations in the germline:implications for evolutionary inference[J]. Trends Genet,2000,16:551-558.
Faris J D, Laddomada B, Gill B S. Molecular mapping of segregation distortion loci in Aegilops taushii[J]. Genetics,1998,149:319-327.
Fuji K, Kobayashi K, Okamoto N, et al. Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus)[J]. Aquaculture,2006,254:203-210.
Garcia de Leon F J, Dallas J F, Chatain B, et al. Development and use of microsatellite markers in sea bass, Dicentrarchus labrax (Linnaeus,1758) (Perciformes:Serrandidae)[J]. Mol Mar Biol Biotechnol,1995,4:62-68.
Gates M A, Kim L, Egan E S, et al. A genetic linkage map for zebrafish: Comparative analysis and localization of genes and expressed sequences [J]. Genome Res, 1999,9:334-347.
Gharbi K, Gautier A, Danzmann R G, et al. A linkage map for brown trout (Salmo trutta):chromosome homeologies and comparative genome organization with other salmonid fish[J]. Genetics,2006,172:2405-2419.
Giacomo S, Francesco N, Francesco F. Isolation of novel microsatellite loci in Orchesella villosa (Arthropoda, Collembola)[J]. Pedobiologia,2006,50: 105-109.
Geoffrey C, Waldbieser C, Bosworth B G, et al. A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus[J]. Genetics,2001,158: 727-734.
Goldstein D B, Pollock D D. Launching microsatellites:a review of mution processes and methods of phylogenetic inference[J]. Hered,1997,88:355-342.
Grandillo S, Tanksley S D. Genetic analysis of RFLPs, GATA microsatellites and RAPDs in a cross between L. esculentum and L. pimpinellifolium[J]. TAG Theoretical and Applied Genetics,1996,92:957-965.
Grattapaglia, D., Sederoff, R.. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross:mapping strategy and RAPD markers[J]. Genetics,1994,137:1121-1137.
Guo W, Wang Z Y, Wang YL, et al. Isolation and characterization of microsatellite loci in wild and cultured large yellow croaker (Pseudosciaena crocea Richardson). Abstract of 13th International Congress on Genes, Gen Families and Isozymes & 2005'Forum on Fisheries Science and Technology.2005, Shanghai, China. p.46-47.
Gur-Arie R, Cohen C, Eitan L, et al. Abundance, non-random genomic distribution, nucleotide composition, and polymorphism of simple sequence repeats in E.coli[J]. Genome Res,2000,10:61-70.
Haanstra J P W, Wye C, Verbakel H, etc. An integrated high-density RFLP-AFLP map of tomato based on two Lycopersicon esculentum x L. pennellii F2 populations[J]. Theor Appl Genet,1999,99:254-271.
Haldane J B S. Sex ratio and unisexual sterility in hybrid animals[J]. Genetics,1922, 12:101-109.
Haley C S, Knott S A, Elsen J M. Mapping quantitative trait loci in crosses between outbred lines using least-squares[J]. Genetics,1994,136:1195-1207.
Han Fang, Xiao-Qing Wang, Cui-luan Yao, et al. Molecular characterization of ran gene up-regulated in large yellow croaker (Pseudosciaena crocea) immunity [J]. Fish & Shellfish Immunology.2010,29:327-333.
Hatey F, Tosser K G, Clouscard-Martinato C, et al. Expressed sequenced tags for genes:a review[J]. Genet Sel Evol,1998,30(5):521-541.
Hauswaldt J S, and Glenn T C. Mierosatellite DNA loci from the diamondback terrapin (Malaclemys terrapin)[J]. Mol Ecol Notes,2003,3:174-176.
Hedgecock D, Hubert S, Li G, et al. A genetic linkage map of 100 microsatellite markers for the pacific oyster Crassostrea gigas[J]. Journal of Shellfish Research, 2002,21(1):381.
Hemmat M, Weeden N F, Manganaris A G. et al. Molecular marker linkage map for apple[J]. J Hered,1994,85:4-11.
Herbinger C M, Doyle R W, Pitman E R, et al. DNA fingerprintbased analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout[J]. Aquaculture,1995,137:245-256.
Houston R D, Gheyas A, Hamilton A, et al. Detection and confirmation of a major QTL affecting resistance to infectious pancreatic necrosis (IPN) in Atlantic salmon (Salmo salar)[J]. Dev Biol (Basel),2008,132:199-204.
Huang B X, Peakall R, Hanna P J. Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers[J]. Mar Biol,2000,136:207-216.
Hubert S, Hedgecock D. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas[J]. Genetics,2004,168:351-362.
Huseyin K, Wang S L, Li P, et al. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers[J]. Genetics,2009, DOI:108.098855.
Jansen R C, Stam P. High resolution of quantitative traits into multiple loci via interval mapping [J]. Genetics,1994,136:1447-1454.
Jeffreys A J, Tamaki K, MacLeod A, et al. Complex gene conversion events in germline mutation at human minisatellites[J]. Nat Genet,1994,6:136-145.
Jerry D R, Evans B S, Matt K, et al. Development of a microsatellite DNA parentage marker suite for black tiger shrimp Penaeus monodon[J]. Aquaculture,2006, 255:542-547.
Jerry D, Preston N, Crocos P, et al. Application of DNA parentage analyses for determining relative growth rates of Penaeus japonicus families reared in commercial ponds[J]. Aquaculture,2006,254:171-181.
Johnson K R, Wright J E, May B. Linkage relationships reflecting ancestral tetraploidy in salmonid fish[J]. Genetics,1987,116:579-591.
Jones A G, Stockwell C A, Walker A, et al. The molecular basis of a microsatellite null allele from the white sands pupfish[J]. J Heredity,1999,89:339-342.
Kai W, Kikuchi K, Fujita M, etc. A genetic linkage map for the tiger pufferfish, Takifugu rubripes [J]. Genetics,2005,171:227-238.
Kalinowski S T. How many alleles per locus should be used to estimate genetic distances[J]. Heredity,2002,88:62-65.
Kalinowski S, Taper M, Marshall T. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment [J]. Molecular Ecology,2007,16:1099-1106.
Kao C H, Zeng Z B. General formulas for obtaining the MLEs and the asymptotic variance-covariance matrix in mapping quantitative trait loci when using the EM algorithm [J]. Biometrics,1997,53:653-665.
Kanako F, Osamu H, Kazumitsu H, et al. Marker-assisted breeding of a lymphocystis disease-resistant Japanese flounder(Paralichthys olivaceus)[J]. Aquculture,2007, 272:291-295.
Kappes S M, Keele J W, Stone R T. et al. A second-generation linkage map of the bovine genome [J]. Genome Res,1997,7:235-249.
Karagyozov L, Kalcheva I, Chapman V. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats[J]. Proc. Natl. Acad. Sci.1993,21:3911-3912.
Kandpal R P, Kandpal G, Weissman S M. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers[J]. Proc Natl Acad Sci U S A,1994,91:88-92.
Kelly P D, Chu F, Woods LG, etc. Genetic linkage mapping of zebrafish genes and ESTs[J]. Genome Res,2000,10:558-567.
Kimura T, Yoshida K, Shimada A, et al. Genetic linkage map of medaka with polymerase chain reaction length polymorphisms [J]. Gene,2005,363:24-31.
King T, Kalinowski S, Schill W, et al. Population structure of Atlantic salmon (Salmo salar L.):a range-wide perspective from microsatellite DNA variation [J]. Molecular Ecology,2001,10 (4):807-821.
Kocher T D, Lee W, Sobolewska H, et al. A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus)[J]. Genetics,1998,148:1225-1232.
Kolodner R D, Marsischky G T. Eukaryotic DNA mismatch repair [J]. Curr Opin Genet Dev,1999,9:89-96.
Koop B F, Davidson W S. ESTs, microarrays and genomic research in salmon (GRASP). Plant and Animal Genome XIII Abstracts. Available on http://www.intl-pag.org/13/abstracts/PAG13 W022.html, 2005.
Kosambi D D. The estimation of map distances from recombination values[J]. Ann Eugen,1994,12:172-175
Kucuktas H, Wang S, Li P, et al. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers[J]. Genetics,2009, DOI:108.098855.
Lander E S, Bosteind. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps[J]. Genetics,1989,121:185-199.
Lander E S, Green P, Abrahamson J, et al. MAPMAKER:an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations [J]. Genomics,1987,1:174-181.
Lee B Y, Lee W J, Streelman J T, et al. A second generation genetic linkage map of tilapia (Oreochromis spp.)[J]. Genetics,2005,170:237-244.
Lee B Y, Penman D J, Kocher T D. Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis[J]. Anim Genet, 2003,34 (5):379-83.
Levinson G, and Gutman G A. High frequency of short frameshifts in poly-CA/GT tandem repeats borne by bacteriophage M13 in Escherichia coli K-12[J]. Nucl Acids Res,1987,15:5323-5338.
Li L, Guo X. A primary linkage map for the pacific oyster Crassostrea gigas with AFLP markers [J]. Journal of Shellfish Research,2002,21(1):433.
Li L, Guo X. AFLP-based genetic linkage maps of the pacific oyster Crassostrea Gigas Thunberg [J]. Marine Biotechnology,2004,6:26-36.
Li L, Xiang J, Liu X, Zhang Y, et al. Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers[J]. Aquaculture,2005,245:63-73.
Li Q, Park C, Kobayashi T, Kijima A. Inheritance of Microsatellite DNA Markers in the Pacific Abalone Haliotis discus hannai[J]. Mar Biotechnol,2003,5:331-338.
Li W H. Molecular Evolution[M]. Sunderland, MA:Sinauer Associates,1997, 177-213.
Li Y, Byrne K, Miggiano E, et al. Genetic mapping of the kuruma prawn Penaeus japonicus using AFLP markers[J]. Aquaculture,2003,219:143-156.
Li Y, Cai M, Wang Z Y, et al. Microsatellite-centromere mapping in large yellow croaker (Pseudosciaena crocea) using gynogenetic diploid families [J]. Marine Biotechnology.2008,10:83-90
Lindahal K F. His and hers recombinational hotspots[J]. Trends in Genetics,1991, 7(9):273-276.
Liu X, Liu X, Guo X, et al. A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino [J]. Marine Biotechnology,2006,8:386-397.
Liu Z, Karsi A, Li P, et al. An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family[J]. Genetics,2003,165:687-694.
Liu Z. Transcription analysis of channel catfish (Ictalurus punctatus):initial analysis of gene expression and microsatellite containing cDNAs in the skin[J]. Gene, 2002,285:157-168.
Liu Z J. Aquculture genome technologies[M]. USA:Blackwell Publishing,2007, 43-55.
Liu Z J, Cordes J F. DNA marker technologies and their applications in aquaculture genetics[J]. Aquaculture,2004,238:1-37.
Liu Z J, Karsi A, Dunham R A. Development of polymorphic EST markers suitable for genetic linkage mapping of catfish[J]. Mar Biotechnol,1999b,1:437-447.
Liu Z J, Tan G, Kucuktas H, et al. Brief communication:High levels of conservation at microsatellite loci among ictalurid catfishes[J]. J Hered,1999,90:307-312.
Liu Z J, Tan G, Li P, et al. Transcribed dinucleotide microsatellites and their associated genes from channel catfish, Ictalurus punctatus[J]. Biochem Biophys Res Commun,1999b,259:190-194
Lodhi M A, Daly M J, Ye G N, et al. A molecular marker based linkage map of Vitis[J]. Genome,1995,38:786-794.
MacAvoy E, Wood A, Gardner J. Development and evaluation of microsatellite markers for identification of individual Greenshell (TM) mussels (Perna canaliculus) in a selective breeding programme[J]. Aquaculture,2008,274: 41-48.
Manly K F, Cudmore R H, Meer J M. Map Manager QTX, cross-platform software for genetic mapping[J]. Mamm Genome,2001,1:930-932.
Marshall T C, Slate J, Kruuk L, et al. Statistical confidence for likelihood-based paternity inference in natural populations [J]. Mol Ecol,1998,7:639-655.
Martin G B, Williams J C, and Tanksley S D. Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using randan primers and near-isogenetic lines[J]. Pro Natl Acad Sci USA,1991,88:2336-2340.
McConnell S K, Hamilton L, Morris D, et al. Isolation of salmonid microsatellite loci and their application to the population genetics of Canadian east coast stocks of Atlantic salmon[J]. Aquaculture,1995,137:19-30.
Metzgar D, Bytof J, and Wills C. Selection against frameshift mutations limits microsatellite expansion in coding DNA[J]. Genome Res,2000,10:72-80.
Moen T, Hayes B, Baranski M, et al. A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers[J]. BMC Genomics,2008,9:2 23-236.
Moen T, Hoyheim B, Munck H, et al. A linkage map of Atlantic salmon (SaIrno salar) reveals an uncommonly large difference in recombination rate between the sexes[J]. Anim Genet,2004,35:81-92.
Moghadam H K, Jocelyn P, Heather F, et al. Quantitative trait loci for body weight, condition factor and age at sexual maturation in Arctic charr (Salvelinus alpinus): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar)[J]. Mol Genet Genomics,2007,277:647-661.
Moran C. Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes [J]. J Hered,1993,84:274-280.
Morizot D C, Slaugenhaupt S A, Kallman K D, et al. A genetic linkage map of fishes of Genus Xiphophorus (Teleostei:poe ciliidae)[J]. Genetics,1991,127:399-410.
Morris D B, Richard K R, Wright J M. Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic studies of salmonids[J]. Can J Fish Aquat Sci,1996,53:120-126.
Naruse K, Fukamachi S, Mitani H, et al. A Detailed Linkage Map of Medaka, Oryzias latipes:Comparative Genomics and Genome Evolution[J]. Genetics,2000,154: 1773-1784.
Naruse K, Tanaka M, Mita K, et al. A medaka gene map:the trace of ancestral vertebrateproto- chromosomes revealed by comparative gene mapping[J]. Genome Res,2004,14:820-828.
Neff B. Genetic paternity analysis and breeding success in bluegill sunfish (Lepomis macrochirus) [J]. Journal of Heredity,2001,92:111-119.
Nichols K M, Young W P, Danzmann R G, et al. A consolidated linkage map for rainbow trout (Oncorhynchus mykiss)[J]. Anim Genet,2003,34:102-115.
Ning Y, Liu X, Wang Z Y.et al. A genetic map of large yellow croaker Pseudosciaena crocea[J]. Aquaculture,2007,264(1):16-26.
O'Hara E, Nishimura T, Nagakura Y, et al. Genetic linkage maps of two yellowtails (Seriola quinqueradiata and Seriola lalandi)[J].Aquaculture,2005,244:41-48.
O'Malley K G, Sakamoto T, Danzmann R G, et al. Quantitative trait loci for spawning date and body weight in rainbow trout:testing for conserved effects acrsoo ancestrally duplicated chromosomes[J]. J Heredity,2003,94 (4) 273-284.
Ozaki A, Sakamoto T. et al. Quantitative trait loci (QTLs) associated with resistance/susceptibility of infectious pancreatic necrosis (IPN) in rainbow trout (Oncorhynchus mykiss)[J]. Molecular Genetics and Genomics,2001,265:23-31.
Palti Y, Shirak A, Hulata G, et al. Detection of genes with deleterious alleles in an inbred line of tilapia (Oreochromis aureus)[J]. Aquaculture,2002,206:151-164.
Perez-Enriquez R, Takagi M, Taniguchi N. Genetic variability and pedigree tracing of a hatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatellite DNA markers[J]. Aquaculture,1999,173: 413-423.
Postlethwait J H, Johnson S L, Midson C N, et al. A genetic linkage map for the zebrafish[J]. Science,1994,264:699-703.
Powell W, Morgante M, Andre C. The comparison of RFLP, RAPD and SSR (microsatellite) markers for germplasm analysis[J]. Mol Breed,1996,2: 225-238.
Presa P, Guyomard R. Conservation of microsatellites in three species of salmonids[J]. J Fish Biol,1996,49:1326-1329.
Primmer C R, M(?)ller A P, Ellegren H. A widerange survey of cross-species microsatellite amplifcation in birds[J]. Mol Ecol,1996,5:365-378.
Qin Y, Liu X, Zhang H, et al. Genetic mapping of size-related quantitative trait loci (QTL) in the bay scallop (Argopecten irradians) using AFLP and microsatellite markers [J]. Aquaculture,2007,272:281-290.
Quillet M C, Madjidian N, Griveau Y, et al. Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus[J]. TAG Theoretical and Applied Genetics,1995,91:1195-1202.
Ren P, Wang Z Y, Yao C L, et al. Development of 11 polymorphic microsatellite loci in the small abalone(Haliotis diversicolor Reeve)[J]. Molecular Ecology Resources,2008,8:1390-1392.
Rexroad C E, Rodriguez M F, Coulibaly I, et al. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)[J]. BMC Genomics,2005,6:54-62.
Rice W R. Analysis tables of statistical tests[J]. Evolution,1989,43:223-225.
Richardson J. Report on the ichthyology of the seas of China and Japan. Brit. Ass. Adv. Sci. Rep,1846,15th Meeting (1845),187-320.
Rico C, Rico I, Hewitt G.470 million years of conservation of microsatellite loci among fish species[J]. Proc R Soc Lond,1996,263:549-557.
Rodzen J, Famula T, May B. Estimation of parentage and relatedness in the polyploid white sturgeon (Acipenser transmontanus) using a dominant marker approach for duplicated microsatellite loci[J]. Aquaculture,2004,232:165-182.
Rohrer G A, Alexander L J, Smith J W, et al. A comprehensive map of the porcine genome[J]. Genome Res,1996,6:371-391.
Sakamoto T, Danzmann R G, Gharbi K, et al. A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates [J]. Genetics,2000,155:1331-1345.
Sambrook J, Fritsch E F, Maniatis T. Molecular cloning a laboratory manual,2nd edn[M]. New York:Cold Spring Harbor Laboratory Press,1989.
Schlotterer C, Amos B, and Tautz D. Conservation of polymorphic simple sequence loci in cetacean species[J]. Nature,1991,354:63-65.
Sekino M, Hara M. Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers. Genetics,2007,175:945-958.
Sekino M, Saitoh K, Yamada T, et al. Microsatellite-based pedigree tracing in a Japanese flounder Paralichthys olivaceus hatchery strain:implications for hatchery management related to stock enhancement program[J]. Aquaculture, 2003,221 (1-4):255-263.
Serapion J, Kucuktas H, Feng J, et al. Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish(Ictalurus punctatus)[J]. Mar Biotechnol,2004,6:364-377.
Shimoda N, Knapik E W, Ziniti J, et al. Zebrafish genetic map with 2000 microsatellite markers [J]. Genomics,1999,58:219-232.
Shirak A, Palti Y, Cnaani A, et al. Association between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia(Oreochromis aureus)[J]. J Hered,2002,93 (4):270-6.
Shirak A, Seroussi E, Cnaani A, et al. Amh and Dmrta2 genes map to tilapia (Oreochromis spp.) linkage group 23 within QTL regions for sex determination[J]. Genetics,2006,174:1573-1581.
Sia E A, Kokoska R J, Dominska M, et al. Microsatellite instability in yeast: dependence on repeat unit size and DNA mismatch repair genes [J]. Mol Cell Biol,1997,17:2851-2858.
Singer A, Perlman H, Yan Y, etc. Sex-specific recombination rates in Zebrafish (Danio rerio)[J]. Genetics,2002,160:649-657.
Silver L M. Use gentetics:Concepts and application[M]. NewYork:Oxford Univesity Press,1995.
Smith G P. Evolution of repeated DNA sequences by unequal crossover[J]. Science, 1976,191:528-535.
Soller M, Brody T, Genizi A. On the power of experimental design for the detection of linkage between marker loci and quantitative loci in crosses between inbred lines[J]. Theor Appl Genet,1976,47:35-39.
Stam P. Construction of integrated genetic linkage maps by means of a new computer package-JOINMAP[J]. Plant J,1993,3:739-744.
Sueoka N. On the genetics basis of variation and heterogeneity of DNA base composition[J]. Proc Natl Acad Sci USA,1962,48:582-592.
Sugama K, Taniguchi N, Umeda S. An experimental study on genetic drift in hatchery population of red sea bream[J]. Nippon Suisan Gakkaishi,1988,54:734-744
Suiter K A, Wendel J F, Case J S. Linkage-1:A pascal computer program for the dection and analysis of genetic linkage[J]. J Hered,1983,74:203-204.
Sun X, Liang L. A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance[J]. Aquaculture,2004,238: 165-172.
Tan Y D, Wan C, Zhu Y, et al. An amplified fragment length polymorphism map of the silkworm [J]. Genetics,2001,157:1277-1284.
Taniguchi N, Sumantadimata K, Iyama S. Genetic change in the first and second generations of hatchery stock of black sea bream[J]. Aquaculture,1993,35: 309-320
Tanksley S D, Young N D, Paterson A H. RFLP mapping in plant breeding:new tools for an old science [J]. Biotechnology,1989,7:257-264.
Tautz D. Hypervariability of simple sequences as a general source for polymorphic DNA markers [J]. Nucleic Acids Res,1989,17:6463-6471.
Tompson D, Scott A P. An analysis recombination data in gynogenetic diploid rainbow trout[J]. Heredity,1984,53:441-452.
Tong J, Lehnert S A, Byrne K, et al. Development of polymorphic EST markers in Penaeus monodon:applications in penaeid genetics[J]. Aquaculture,2002, 208:69-79
Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes:survey and analysis [J]. Genome Res,2000,10:967-981.
Triantafyllidis A, Krieg F, Cottin C, et al. Genetic structure and phylogeography of European catfish (Silurus glanis) populations[J]. Mol. Ecol,2002,11: 1039-1055.
Van Lith H A, and Van Zutphen L F. Characterization of rabbit DNA microsatellites extracted from the EMBL nucleotide sequence database [J]. Anim Genet,1996, 27:387-395.
Van Oosterhout C V, Hutchinson W F, Willis P M, et al. Micro-Checker:software for identifying and correcting genotyping errors in microsatellite data [J]. Mol Ecol Notes,2004,4:535-538.
Velmala R J, Vilkki H J, Elo K T, et al. A search for quantitative trait loci for milk production traits on chromosome 6 in Finnish Ayrshire cattle[J]. Animal Genetics,1999,30:136-143.
Voorrips R E. MapChart:Software for the graphical presentation of linkage maps and QTLs[J]. J Hered,2002,93:77-78.
Vos P, Hogers R, Bleeker M, et al.AFLP:a new technique for DNA fingerprinting[J]. Nucleic Acids Res,1995,23:4407-4414.
Waldbieser G C, Bosworth B G, Nonneman D J, et al. A microsatellite-based genetic linkage map for channel catfish, Ictaluruspunctatus[J]. Genetics,2001,158: 727-734.
Wan X, Chen X. Molecular characterization and expression analysis of interferon-inducible protein 56 gene in large yellow croaker Pseudosciaena crocea[J]. Journal of Experimental Marine Biology and Ecology.2008,364: 91-98.
Wang C M, Zhu Z Y, Lo L C, et al. A Microsatellite Linkage Map of Barramundi, Lates calcarifer[J]. Genetics,2007,175:907-915.
Wang C M, Lo L C, Feng F, et al. Identification and verification of QTL associated with growth traits in two genetic backgrounds of Barramundi (Lates calcarifer)[J]. Animal Genetics,2007,39:34-39.
Wang C M, Lo L C, Zhu Z Y, et al. A genome scan for quantitative trait loci affecting growth-related traits in an F1 family of Asian seabass (Lates calcarifer)[J]. BMC Genomics,2006,7:274-287.
Wang D, Liao X L, Cheng L, et al. Development of novel EST-SSR markers in common carp by data mining from public EST sequences [J]. Aquaculture,2007, 271:558-574.
Wang H X, Li F H, Xiang J H. Polymorphic EST-SSR markers and their mode of inheritance in Fenneropenaeus chinensis[J]. Aquaculture,2005,249:107-114.
Wang L L, Chang Y Q, Xu W, et al.A preliminary geneticmap of Zhikong scallop (Chlamys farreri Jones et Preston 1904)[J]. Aquaculture,2005,36:643-653.
Wang Z, Weber J L, Zhong G, et al. Survey of plant short tandem DNA repeats[J]. TAG Theoretical and Applied Genetics,1994,88:1-6.
weber J L. Informativeness of human (dc-da)n (dg-dt)n polymorphisms[J]. Genomics, 1990,7:524-30.
Weber J L, and May P E. Abundant class of human DNA polymorghisms which can be typed using the polymorphism chain reaction[J]. Am J Hum Genet,1989,44: 388-396.
Weber J L, and Wong C. Mutation of human short tandem repeats[J]. Hum Mol Genet, 1993,2:23-1128.
Welsh J, McClell M. Fingerprinting genomes using PCR with arbitrary primers[J]. Nucleic Acids Res,1990,18:7213-7218.
Williams J G, Kubelik A R, Livak K J, et al. DNA polymorphism amplified by arbitrary primers are useful as genetic markers[J]. Nucleic Acids Res,1990,18: 6531-6535.
Woods I G, Kelly P D, Chu F, et al. A Comparative map of the zebrafish genome[J]. Genome Res,2000,10:1903-1914.
Woram R A, McGowan C, Stout J A, et al. Agenetic linkage map for Arctic char (Salvelinus alpinus):evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents[J]. Genome,2004,47: 304-315.
Xu P S, Wang L, Liu E, et al. Generation of channel catfish BAC end sequences for marker development and assessmentof syntenic conservation with other fish species[J]. Anim Genet,2006,37:321-326.
Xu S Z. Theoretical Basis of the Beavis Effect[J]. Genetics,2003,165:2259-2268.
Yao C L, Kong P, Wang Z Y, et al. Cloning and expression analysis of two alternative splicing toll like receptor 9 isoforms A and B in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology,2008,25(5):648-656.
Yao C L, Kong P, Wang Z Y, et al. Molecular cloning and expression of MyD88 in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology, 2009,26(2):249-255.
Yao C L, Kong P, Huang X N, et al. Molecular Cloning and expression of IRF1 in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology, 2010,28:654-660.
Young W P, Wheeler P A, Coryell V H, et al. A detailed linkagemap of rainbow trout produced using doubled haploids[J]. Genetics,1998,148:839-850.
Yue G H, Ho M Y, Orban L, et al. Microsatellites within genes and ESTs of common carp and their applicability in silver crucian crap[J]. Aquaculture,2004,234: 85-98.
Yu Z.and Guo X. A basic AFLP linkage map for the eastern oyster, Crassostrea virginica Gmelin[J]. Journal of Shellfish Research,2002,21(1):382.
Yu Z, Guo X. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin[J]. Biol Bull,2003,204:327-338.
Zabeau M, Vos P. Selective restriction fragment amplification:a general method for DNA fingerprinting [P]. European Patent Application 94202629.7 (Publication No.0534858A1). Paris:European Patent Office,1992.
Zamir D, Tadmor Y. Unequal segregation of nuclear genes in plants [J]. Botanical Gazette,1986,147:355-358.
Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation:a review[J]. Mol Ecol,2002,11:1-16.
Zeng Z B. Precision mapping of quantitative trait loci[J]. Genetics,1994,136: 1457-1468.
Zhan A B, Bao Z M, Wang X L, et al. Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags[J]. Fish Sci,2005,71: 1341-1346.
Zhang J Z, Ao J Q, Chen X H. Molecular and functional characterization of a novel CC chemokine in large yellow croaker(Pseudosciaena crocea)[J]. Fish & Shellfish Immunology,2008,25:664-671.
Zhang Q, Allen S K, Reece K S.Genetic variation in wild and hatchery stocks of suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers[J]. Mar Biochnol,2005,7:588-599.
Zhao W, Miao X, Jia S. Isolation and characterization of microsatellite loci from the mulberry, Morus L. [J]. Plant Sci,2005,168:519-525.
Zhu J, Weir B S. Mixed model approaches for genetic analysis of quantitative traits[A]. In:Chen L S, Ruan S G, Zhu J (eds). AdvancedTopcis in Biomathematics proceedings of international conference on mathematical biology[C]. Singapore:World Scientific Publishing Co,1998,321-330.
陈莉,邓文汉,卢菀华,等.大黄鱼生长激素基因的克隆与表达[J].福州大学学报(自然科学版),2004,32(6)：754-758.
陈卫忠.东海区主要经济鱼类资源近况[J].海洋渔业,1994,16(4)：163-167.
陈兆波.分子标记的种类及其在作物遗传育种中的应用[J].现代生物医学进展,2009,9(11)：2179-2148
丁少雄.分子标记在大黄鱼(P.crocea)遗传育种及石首鱼科(Sciaenidae)分子系统进化研究中的应用[D].2001.厦门大学博士学位论文.
丁诗华,黄丽英,张海琪,徐晓林.大黄鱼(Pseudosciaena crocea)岱衢洋选育群体和官井洋养殖群体的遗传差异分析[J].海洋与湖沼,2006,37(1)：41-46.
董秋芬,刘楚吾,郭昱嵩,刘丽,吴勇.9种石斑鱼遗传多样性和系统发生关系的微卫星分析[J].遗传,2007,29(7)：837-843.
杜皓月,杨凯,王凤敏.DNA分子标记技术在水产养殖中的研究应用[J].河北渔业,2009,(5)：38-43.
方宣钧,吴为人,唐纪良.作物DNA标记辅助育种[M].北京：科学出版社,2001.
葛芹玉.白鲢与团头鲂遗传连锁图谱的构建[D].2002.南京农业大学硕士学位论文.
郭葳.大黄鱼与银鲫微卫星标记的筛选开发及群体遗传分析[D].2007.中国科学院研究生院博士学位论文.
郝君,孙效文,梁利群等.大黄鱼微卫星标记的富集与筛选[J],中国水产科学,2006,13(5)：762-766.
赫崇波,周遵春,刘卫东.斑点叉尾的基因组研究[J].水产科学,2005,24(1)：38-40.
黄勤,陈曦,杨金先,等.福建养殖大黄鱼(Pseudosciaena crocea) RAPD标记及多态性调查[J].福建农业学报,2007,22(2)：130-135.
江树勋,马鸿媚,邓文汉,等.大黄鱼生长激素基因的分离及序列测定[J].生物工程进展,2002,22(2)：88-90.
景润春,黄青阳,朱英国.图未克隆技术在分离植物基因中的应用[J].遗传,2000,22(3)：180.
李宏俊.海湾扇贝微卫星标记的开发及遗传连锁图谱的构建[D].2009.中国科学院博士学位论文.
李莉.长牡蛎的分子标记筛选和遗传连锁图谱构建[D].2003.中国科学院博士研究生学位论文.
李明云,张海琪,竺俊全,等.象山港养殖大黄鱼同工酶的分析[J].海洋学报,2003,25(2)：231-236.
李明云,朱俊杰,邬勇,等.大黄鱼线粒体DNA的限制性内切酶图谱[J].科技通报,2006,27(4)：456-461.
李齐发,赵兴波,罗晓林,等.牦牛基因组微卫星富集文库的构建与分析[J].遗传学报,2004,31(5)：489-494.
李益云.大黄鱼雌核发育的诱导及遗传分析[D].2007.集美大学硕士学位论文.
林红,夏德全,杨弘.遗传连锁图谱及其在鱼类遗传育种中的应用[J].中国水产科学,2000,7(1)：95-98.
林能锋,苏永全,丁少雄,等.大黄鱼微卫星标记引物在石首鱼科几个近缘种中的通用性研究[J].中国水产科学,2008,15(2)：237-243.
林琪,吴建绍.三倍体大黄鱼的诱导及其对生长、性腺发育的影响[J].水产学报,2004,28(6)：728-732.
林琪,吴建绍,曾志南.静水压休克诱导大黄鱼三倍体[J].海洋科学,2001,(9)：6-9.
梁俊,李道季,卢莉琼.日本鳗鲡(Anguilla japonica)和欧洲鳗鲡(A.anguilla)的微卫星差异[J].海洋与湖沼,2003,34(4)：414-421.
刘颖,蔡明夷,刘贤德,等.大黄鱼♀与黄姑鱼♂杂交F1家系出孵仔鱼的AFLP分析[J].水产学报,2010,34(6)：672-678.
骆蒙,贾继增.植物基因组表达序列标签(EST)计划研究进展[J].生物化学与生物物理进展,2001,28(4)：494-497.
马梁,王军,陈武各,等.(?)状黄姑鱼与大黄鱼人工杂交子代的胚胎发育[J].厦门大学学报(自然科学版),2002,41(3)：378-381.
孟庆闻,缪学祖,张菡初,等.鱼类学(上册)[M].北京：农业出版社,1960.
蒙子宁,庄志猛,丁少雄,等.中国近海8种石首鱼类的线粒体16S rRNA基因序列变异及其分子系统进化[J].自然科学进展,2004,14(5)：514-521.
全成干,王军.大黄鱼养殖群体遗传多样性的同工酶[J].厦门大学学报：自然科学版,1999,38(4)：584-588.
任鹏.杂色鲍和大黄鱼微卫星标记的筛选[D].集美大学硕士学位论文,2008.
盛岩,郑蔚虹,裴克全,马克平.微卫星标记在种群生物学研究中的应用[J].植物生态学报,2002,26(增刊)：119-126.
孙效文,梁利群.鲤鱼的遗传连锁图谱(初报)[J].中国水产科学,2000,7(1)：1-5.
谭远德,万春玲.不同作图群体对显隐性分子标记位点的作图效率[J].生命科学研究,2000,4(3)：202-209.
谭杰,孙慧玲,刘萍,杨爱国,燕敬平,等.3个仿刺参地理种群遗传变异的微卫星DNA分析[J].水产学报,2007,31(4)：437-442.
王德祥.大黄鱼不同群体分子标记及品种改良的研究[D].2004.厦门大学博士学位论文.
王军,全成干,苏永全,等.官井洋野生与养殖大黄鱼同工酶的研究[J].海洋科学,2001,25(6)：39-41.
王军,王德祥,尤颖哲,等.大黄鱼三倍体诱导的初步研究[J].厦门大学学报(自然科学版),2001,40(4)：927-930.
王玲玲.栉孔扇贝和海湾扇贝遗传连锁图谱的构建研究[D].2005.中国科学院博士学位论文.
王师.栉孔扇贝遗传图谱的构建及重复元件的进化分析[D].2007.中国海洋大学博士学位论文.
王伟继,孔杰,董世瑞,等.中国明对虾AFLP分子标记遗传连锁图谱的构建[J].动物学报,2006,52(3)：575-584.
王小平.闽东大黄鱼养殖业现状及其发展对策[J].福建水产,2000,(2)：52-57.
王晓清.大黄鱼DNA分子标记技术及其在遗传育种中应用研究[D].2007.湖南农业大学博士学位论文.
王晓清,王志勇,柳小春,等.人工雌核发育大黄鱼的AFLP分析[J].海洋与湖沼,2007,1(38)：34-40.
王晓清,王志勇,谢中国,等.大黄鱼(♀)与(?)(♂)杂交杂交的遗传分析[J].水产学报,2008,32(1)：51-57.
王志勇,王艺磊,林利民,等.福建官井洋大黄鱼AFIP指纹多态性的研究[J].中国水产科学,2002,9(3)：198-203.
王志勇,谢芳靖,刘家富.大黄鱼雌核发育二倍体诱导方法[P].中国,发明专利,1792347,2006.
吴清明.大黄鱼同质雌核发育的诱导及遗传分析[D].2009.集美大学硕士学位论文.
谢中国.大黄鱼(♀)与(?)鱼(♂)杂交及其子代的遗传分析[D].2006.湖南农业大学硕士学位论文.
许建和,尤锋,吴雄飞,等.冷休克法和静水压法人工诱导大黄鱼三倍体[J].中国水产科学,2006,13(2)：206-210.
徐云碧,朱丽煌,分子数量遗传学[M].北京：中国农业出版社,1994.
姚红伟,袁霞,付鑫.AFLP分子标记技术及其在水产动物中的应用[J].现代渔业信息.2009,24(7)：22-24.
叶小军,王志勇,刘贤德,等.大黄鱼连续两代雌核发育群体的微卫星标记分析[J].水生生物学报,2010,34(1)：144-151.
岳志芹,孔杰,戴继勋.水产动物遗传连锁图谱的研究现状及应用展望[J].遗传,2004,26(1)：97-102.
赵广泰.大黄鱼“闽优1号”选育群体遗传结构分析及生长相关性状的遗传参数估计[D].2010.集美大学硕士学位论文.
赵广泰,刘贤德, 王志勇,等.大黄鱼连续4代选育群体遗传多样性与遗传结构的微卫星分析[J].水产学报,2010,34(4)：500-508.
赵寿元,乔守怡.现代遗传学[M].北京：高等教育出版社,2003,53-155.
张彩兰,刘家富,李雅琅,等.福建省大黄鱼养殖现状分析与对策[J].上海水产大学学报,2001,11(1)：77-83.
张天时,刘萍,孟宪红,王伟继,孔杰,等.不同对虾种问共用微卫星DNA引物的研究[J].高技术通讯,2003,13(11)：80-85.
郑春静.温度休克诱导大黄鱼四倍体的初步研究[J].中国水产,2004,3：87-89.
周涵韬,郑文竹,周以侹,夏涛.不同作物间共用SSR引物的初步研究[J].厦门大学学报,2002,41(1)：89-93
周旋.大黄鱼部分脂肪代谢相关基因的克隆及其表达分析[D].2009.集美大学硕士学位论文.
邹曙明,李思发,赵金良,等.福建官井洋海区大黄鱼的染色体核型分析[J].上海水产大学学报,2003,12(2)：179-181.
邹喻萍,葛颂,王晓东.系统与进化植物学中的分子标记[M].北京：科学出版社,2001，1-139.
朱员鼎,罗云林,伍汉霖.中国石首鱼分类系统的研究和新科新属的叙述[M].上海：上海科技出版社,1963.
Agresti J J, Seki S, Cnaaani A, et al. Breeding new strains of tilapia:development of an artificial center of origin and linkage map based on AFLP and microsatellite loci[J]. Aquaculture,2000,185:43-56.
An H S,Cho K C, Park J Y. Eleven new highly polymorphic microsatellite loci in the yellow croaker, Pseudosciaena crocea[J]. Mol Ecol Notes,2005,5:866-868
Arnheim N, Strange C, and Erlich H. Use of pooled DNA samples to detect linkage disequilibrunof polyrmrphic restriction fragment and human disease [J]. Proc Nat Acad Sci USA,1985,82:6970-6974.
Banks M A, Blouin M S, Baldwin B A, et al. Isolation and inheritance of novel microsatellites in Chinook salmon (Oncorhymchus tschawyscha)[J]. J Heredity, 1999,90:281-288.
Barbazuk W B, Korf I, Kadavi C, et al. The syntenic relationship of the zebrafish and human genomes[J]. Genome Res,2000,10:1351-1358.
Barendse W, Armitage S M, Kossarek LM. etc. A genetic linkage map of the bovine genome[J]. Nat Genet,1994,6:227-235.
Beacham T D, Lapointe M, Candy J R, et al. DNA in action:rapid application of DNA variation to sockeye salmon fisheries management[J]. Conservation Genetics,2004,5:411-416.
Beavis W D. The power and deceit of QTL experiments:lessons from comparitive QTL studies, in Proceedings of the Forty-Ninth Annual Corn & Sorghum Industry Research Conference. American Seed Trade Association,1994, Washington, DC. p.250-266.
Beckman J S, and Weber J L. Survey of human and rat microsatellites[J]. Genomics, 1992,12:627-631.
Bentzen P, Olsen J, McLean J, et al. Kinship analysis of Pacific salmon:insights into mating, homing, and timing of reproduction[J]. Journal of Heredity,2001,92: 127.
Bernardi G, Mounchiroud D, Gautier C, et al. Compositional patterns in vertebrate genomes:Conservation and charge in evolution[J]. Mol Evol,1988,28:7-18.
Bernardi G, Olofsson B, Filipski J, et al. The mosaic genome of war-blooded vertebrates[J]. Science,1985,228:953-958.
Bink M, Sandbrink J M, Jansen R C. Linkage and QTL mapping in related full sib families:a case study in potato [J]. Journal of Agricultual Genomics 2001,2: 1-14.
Boudry P, Collet B, Cornette F, et al. High variance in reproductive success of the Pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses[J]. Aquaculture.2002,204:283-296.
Brenner S, Elgar G, Sandford R, et al. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome [J]. Nature,1993,366:265-268.
Burr B, and Burr F. A reconbinant inbreds for molecular mapping in maize theoretical and pratical consolidations [J]. Trends Genet,1991,7 (2):55-60.
Callen D F, Thimpson A D, Shen Y, et al. Incidence and origin of "null" alleles in the (AC)n microsatellite markers[J]. Am J Hum Genet,1993,52:922-927.
Casasoli M, Mattioni C, Cherubini M. et al. A genetic linkage map of European chestnut (Castanea sativa Mill.) based on RAPD, ISSR and isozyme markers[J]. Theor Appl Genet,2001,102:1190-1199.
Castro J, Bouza C, Presa P, et al. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci[J]. Aquaculture,2004, 242:119-135.
Chakravarti A, Lasher L K, Reefer J E. A maximum likelihood method for estimating genome length using genetic linkage data[J]. Genetics,1991,128:175-182.
Chang Y M, Ding L, Wang W W, et al. Isolation and characterization of 11 microsatellite markers for the large yellow croaker, Pseudosciaena crocea[J]. Conserv Genet,2009,10:1405-1408
Chasman D, Adams R M. Predicting the functional consequences of non-synonym single nucleotide polymorphism:structurebased assessment of amino acid variation[J]. J Mol Biol,2001,307:683-706.
Chen S L, Liu Y G, Xu M Y, et al. Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream(Chrysophrys major) and cross-species amplification[J]. Mol Ecol Notes,2005,5:215-217.
Chistiakov D A, Hellemans B, Filip A M. Microsatellites and their genomic distribution, evolution, function and applications:A review with special reference to fish genetics[J]. Aquaculture,2006,255:1-29.
Chistiakov D A, Hellemans B, Haley C S, et al. A microsatellite linkage map of the European sea bass Dicentrarchus labrax L[J]. Genetics,2005,170:1821-1826.
Cnaani A, Hallerman M, Ron E M, et al. Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size,in an F2 tilapia hybrid[J]. Aquaculture,2003,223:117-128.
Cnaani A, Ron M, Hulata G, et al. Fishing in silico:searching for tilapia genes using sequences of microsatellite DNA markers[J]. Anim Genet,2002,33:474-476.
Coimbra M R, Kobayashi K, Koretsugu O, et al. A genetic linkage map of the Japanese flounder, Paralichtys olivaceus[J]. Aquaculture,2003,220:203-218.
Corujo M, Blanco G, Vazquez E, et al. Genetic structure of northwestern Spanish brown trout (Salmo trutta L.) populations, differences between microsatellite and allozyme loci [J].Hereditas,2004,141:258-271.
Crawford A M, and Cuthbertson R P. Mutations in sheep microsatellites [J]. Genome Res,1996,6:876-879.
Cui Z, Liu Y, Li C P, et al. The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae):Unusual features of its control region and the phylogenetic position of the Sciaenidae[J]. Gene,2009, 432:33-43.
Dear P.H. Genome Mapping, A practical approach[M]. New York:Oxford University Press,1997.
Dekkers J C M, and Hospital F. Multifactoral genetics:the use of molecular genetics in the improvement of agricultural populations[J]. Nat Rev Genet,2002,3: 22-32.
Dietrich W F, Miller J, O'Connor T J, etc. A comprehensive genetic map of the mouse genome[J]. Nature,1996,380:149-152.
Diez-Tascon C, Bayon Y, Arranz J J, et al. Mapping quantitative trait loci for milk production traits on ovine chromosome 6[J]. Journal of Dairy Research,2001,68: 389-397.
Edwards Y J, Elgar G, Clark M S, et al. The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses [J]. J Mol Biol, 1998,278:843-854.
Ellegren H. Microsatellite mutations in the germline:implications for evolutionary inference[J]. Trends Genet,2000,16:551-558.
Faris J D, Laddomada B, Gill B S. Molecular mapping of segregation distortion loci in Aegilops taushii[J]. Genetics,1998,149:319-327.
Fuji K, Kobayashi K, Okamoto N, et al. Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus)[J]. Aquaculture,2006,254:203-210.
Garcia de Leon F J, Dallas J F, Chatain B, et al. Development and use of microsatellite markers in sea bass, Dicentrarchus labrax (Linnaeus,1758) (Perciformes:Serrandidae)[J]. Mol Mar Biol Biotechnol,1995,4:62-68.
Gates M A, Kim L, Egan E S, et al. A genetic linkage map for zebrafish: Comparative analysis and localization of genes and expressed sequences [J]. Genome Res, 1999,9:334-347.
Gharbi K, Gautier A, Danzmann R G, et al. A linkage map for brown trout (Salmo trutta):chromosome homeologies and comparative genome organization with other salmonid fish[J]. Genetics,2006,172:2405-2419.
Giacomo S, Francesco N, Francesco F. Isolation of novel microsatellite loci in Orchesella villosa (Arthropoda, Collembola)[J]. Pedobiologia,2006,50: 105-109.
Geoffrey C, Waldbieser C, Bosworth B G, et al. A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus[J]. Genetics,2001,158: 727-734.
Goldstein D B, Pollock D D. Launching microsatellites:a review of mution processes and methods of phylogenetic inference[J]. Hered,1997,88:355-342.
Grandillo S, Tanksley S D. Genetic analysis of RFLPs, GATA microsatellites and RAPDs in a cross between L. esculentum and L. pimpinellifolium[J]. TAG Theoretical and Applied Genetics,1996,92:957-965.
Grattapaglia, D., Sederoff, R.. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross:mapping strategy and RAPD markers[J]. Genetics,1994,137:1121-1137.
Guo W, Wang Z Y, Wang YL, et al. Isolation and characterization of microsatellite loci in wild and cultured large yellow croaker (Pseudosciaena crocea Richardson). Abstract of 13th International Congress on Genes, Gen Families and Isozymes & 2005'Forum on Fisheries Science and Technology.2005, Shanghai, China. p.46-47.
Gur-Arie R, Cohen C, Eitan L, et al. Abundance, non-random genomic distribution, nucleotide composition, and polymorphism of simple sequence repeats in E.coli[J]. Genome Res,2000,10:61-70.
Haanstra J P W, Wye C, Verbakel H, etc. An integrated high-density RFLP-AFLP map of tomato based on two Lycopersicon esculentum x L. pennellii F2 populations[J]. Theor Appl Genet,1999,99:254-271.
Haldane J B S. Sex ratio and unisexual sterility in hybrid animals[J]. Genetics,1922, 12:101-109.
Haley C S, Knott S A, Elsen J M. Mapping quantitative trait loci in crosses between outbred lines using least-squares[J]. Genetics,1994,136:1195-1207.
Han Fang, Xiao-Qing Wang, Cui-luan Yao, et al. Molecular characterization of ran gene up-regulated in large yellow croaker (Pseudosciaena crocea) immunity [J]. Fish & Shellfish Immunology.2010,29:327-333.
Hatey F, Tosser K G, Clouscard-Martinato C, et al. Expressed sequenced tags for genes:a review[J]. Genet Sel Evol,1998,30(5):521-541.
Hauswaldt J S, and Glenn T C. Mierosatellite DNA loci from the diamondback terrapin (Malaclemys terrapin)[J]. Mol Ecol Notes,2003,3:174-176.
Hedgecock D, Hubert S, Li G, et al. A genetic linkage map of 100 microsatellite markers for the pacific oyster Crassostrea gigas[J]. Journal of Shellfish Research, 2002,21(1):381.
Hemmat M, Weeden N F, Manganaris A G. et al. Molecular marker linkage map for apple[J]. J Hered,1994,85:4-11.
Herbinger C M, Doyle R W, Pitman E R, et al. DNA fingerprintbased analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout[J]. Aquaculture,1995,137:245-256.
Houston R D, Gheyas A, Hamilton A, et al. Detection and confirmation of a major QTL affecting resistance to infectious pancreatic necrosis (IPN) in Atlantic salmon (Salmo salar)[J]. Dev Biol (Basel),2008,132:199-204.
Huang B X, Peakall R, Hanna P J. Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers[J]. Mar Biol,2000,136:207-216.
Hubert S, Hedgecock D. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas[J]. Genetics,2004,168:351-362.
Huseyin K, Wang S L, Li P, et al. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers[J]. Genetics,2009, DOI:108.098855.
Jansen R C, Stam P. High resolution of quantitative traits into multiple loci via interval mapping [J]. Genetics,1994,136:1447-1454.
Jeffreys A J, Tamaki K, MacLeod A, et al. Complex gene conversion events in germline mutation at human minisatellites[J]. Nat Genet,1994,6:136-145.
Jerry D R, Evans B S, Matt K, et al. Development of a microsatellite DNA parentage marker suite for black tiger shrimp Penaeus monodon[J]. Aquaculture,2006, 255:542-547.
Jerry D, Preston N, Crocos P, et al. Application of DNA parentage analyses for determining relative growth rates of Penaeus japonicus families reared in commercial ponds[J]. Aquaculture,2006,254:171-181.
Johnson K R, Wright J E, May B. Linkage relationships reflecting ancestral tetraploidy in salmonid fish[J]. Genetics,1987,116:579-591.
Jones A G, Stockwell C A, Walker A, et al. The molecular basis of a microsatellite null allele from the white sands pupfish[J]. J Heredity,1999,89:339-342.
Kai W, Kikuchi K, Fujita M, etc. A genetic linkage map for the tiger pufferfish, Takifugu rubripes [J]. Genetics,2005,171:227-238.
Kalinowski S T. How many alleles per locus should be used to estimate genetic distances[J]. Heredity,2002,88:62-65.
Kalinowski S, Taper M, Marshall T. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment [J]. Molecular Ecology,2007,16:1099-1106.
Kao C H, Zeng Z B. General formulas for obtaining the MLEs and the asymptotic variance-covariance matrix in mapping quantitative trait loci when using the EM algorithm [J]. Biometrics,1997,53:653-665.
Kanako F, Osamu H, Kazumitsu H, et al. Marker-assisted breeding of a lymphocystis disease-resistant Japanese flounder(Paralichthys olivaceus)[J]. Aquculture,2007, 272:291-295.
Kappes S M, Keele J W, Stone R T. et al. A second-generation linkage map of the bovine genome [J]. Genome Res,1997,7:235-249.
Karagyozov L, Kalcheva I, Chapman V. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats[J]. Proc. Natl. Acad. Sci.1993,21:3911-3912.
Kandpal R P, Kandpal G, Weissman S M. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers[J]. Proc Natl Acad Sci U S A,1994,91:88-92.
Kelly P D, Chu F, Woods LG, etc. Genetic linkage mapping of zebrafish genes and ESTs[J]. Genome Res,2000,10:558-567.
Kimura T, Yoshida K, Shimada A, et al. Genetic linkage map of medaka with polymerase chain reaction length polymorphisms [J]. Gene,2005,363:24-31.
King T, Kalinowski S, Schill W, et al. Population structure of Atlantic salmon (Salmo salar L.):a range-wide perspective from microsatellite DNA variation [J]. Molecular Ecology,2001,10 (4):807-821.
Kocher T D, Lee W, Sobolewska H, et al. A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus)[J]. Genetics,1998,148:1225-1232.
Kolodner R D, Marsischky G T. Eukaryotic DNA mismatch repair [J]. Curr Opin Genet Dev,1999,9:89-96.
Koop B F, Davidson W S. ESTs, microarrays and genomic research in salmon (GRASP). Plant and Animal Genome XIII Abstracts. Available on http://www.intl-pag.org/13/abstracts/PAG13 W022.html, 2005.
Kosambi D D. The estimation of map distances from recombination values[J]. Ann Eugen,1994,12:172-175
Kucuktas H, Wang S, Li P, et al. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers[J]. Genetics,2009, DOI:108.098855.
Lander E S, Bosteind. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps[J]. Genetics,1989,121:185-199.
Lander E S, Green P, Abrahamson J, et al. MAPMAKER:an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations [J]. Genomics,1987,1:174-181.
Lee B Y, Lee W J, Streelman J T, et al. A second generation genetic linkage map of tilapia (Oreochromis spp.)[J]. Genetics,2005,170:237-244.
Lee B Y, Penman D J, Kocher T D. Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis[J]. Anim Genet, 2003,34 (5):379-83.
Levinson G, and Gutman G A. High frequency of short frameshifts in poly-CA/GT tandem repeats borne by bacteriophage M13 in Escherichia coli K-12[J]. Nucl Acids Res,1987,15:5323-5338.
Li L, Guo X. A primary linkage map for the pacific oyster Crassostrea gigas with AFLP markers [J]. Journal of Shellfish Research,2002,21(1):433.
Li L, Guo X. AFLP-based genetic linkage maps of the pacific oyster Crassostrea Gigas Thunberg [J]. Marine Biotechnology,2004,6:26-36.
Li L, Xiang J, Liu X, Zhang Y, et al. Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers[J]. Aquaculture,2005,245:63-73.
Li Q, Park C, Kobayashi T, Kijima A. Inheritance of Microsatellite DNA Markers in the Pacific Abalone Haliotis discus hannai[J]. Mar Biotechnol,2003,5:331-338.
Li W H. Molecular Evolution[M]. Sunderland, MA:Sinauer Associates,1997, 177-213.
Li Y, Byrne K, Miggiano E, et al. Genetic mapping of the kuruma prawn Penaeus japonicus using AFLP markers[J]. Aquaculture,2003,219:143-156.
Li Y, Cai M, Wang Z Y, et al. Microsatellite-centromere mapping in large yellow croaker (Pseudosciaena crocea) using gynogenetic diploid families [J]. Marine Biotechnology.2008,10:83-90
Lindahal K F. His and hers recombinational hotspots[J]. Trends in Genetics,1991, 7(9):273-276.
Liu X, Liu X, Guo X, et al. A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino [J]. Marine Biotechnology,2006,8:386-397.
Liu Z, Karsi A, Li P, et al. An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family[J]. Genetics,2003,165:687-694.
Liu Z. Transcription analysis of channel catfish (Ictalurus punctatus):initial analysis of gene expression and microsatellite containing cDNAs in the skin[J]. Gene, 2002,285:157-168.
Liu Z J. Aquculture genome technologies[M]. USA:Blackwell Publishing,2007, 43-55.
Liu Z J, Cordes J F. DNA marker technologies and their applications in aquaculture genetics[J]. Aquaculture,2004,238:1-37.
Liu Z J, Karsi A, Dunham R A. Development of polymorphic EST markers suitable for genetic linkage mapping of catfish[J]. Mar Biotechnol,1999b,1:437-447.
Liu Z J, Tan G, Kucuktas H, et al. Brief communication:High levels of conservation at microsatellite loci among ictalurid catfishes[J]. J Hered,1999,90:307-312.
Liu Z J, Tan G, Li P, et al. Transcribed dinucleotide microsatellites and their associated genes from channel catfish, Ictalurus punctatus[J]. Biochem Biophys Res Commun,1999b,259:190-194
Lodhi M A, Daly M J, Ye G N, et al. A molecular marker based linkage map of Vitis[J]. Genome,1995,38:786-794.
MacAvoy E, Wood A, Gardner J. Development and evaluation of microsatellite markers for identification of individual Greenshell (TM) mussels (Perna canaliculus) in a selective breeding programme[J]. Aquaculture,2008,274: 41-48.
Manly K F, Cudmore R H, Meer J M. Map Manager QTX, cross-platform software for genetic mapping[J]. Mamm Genome,2001,1:930-932.
Marshall T C, Slate J, Kruuk L, et al. Statistical confidence for likelihood-based paternity inference in natural populations [J]. Mol Ecol,1998,7:639-655.
Martin G B, Williams J C, and Tanksley S D. Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using randan primers and near-isogenetic lines[J]. Pro Natl Acad Sci USA,1991,88:2336-2340.
McConnell S K, Hamilton L, Morris D, et al. Isolation of salmonid microsatellite loci and their application to the population genetics of Canadian east coast stocks of Atlantic salmon[J]. Aquaculture,1995,137:19-30.
Metzgar D, Bytof J, and Wills C. Selection against frameshift mutations limits microsatellite expansion in coding DNA[J]. Genome Res,2000,10:72-80.
Moen T, Hayes B, Baranski M, et al. A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers[J]. BMC Genomics,2008,9:2 23-236.
Moen T, Hoyheim B, Munck H, et al. A linkage map of Atlantic salmon (SaIrno salar) reveals an uncommonly large difference in recombination rate between the sexes[J]. Anim Genet,2004,35:81-92.
Moghadam H K, Jocelyn P, Heather F, et al. Quantitative trait loci for body weight, condition factor and age at sexual maturation in Arctic charr (Salvelinus alpinus): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar)[J]. Mol Genet Genomics,2007,277:647-661.
Moran C. Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes [J]. J Hered,1993,84:274-280.
Morizot D C, Slaugenhaupt S A, Kallman K D, et al. A genetic linkage map of fishes of Genus Xiphophorus (Teleostei:poe ciliidae)[J]. Genetics,1991,127:399-410.
Morris D B, Richard K R, Wright J M. Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic studies of salmonids[J]. Can J Fish Aquat Sci,1996,53:120-126.
Naruse K, Fukamachi S, Mitani H, et al. A Detailed Linkage Map of Medaka, Oryzias latipes:Comparative Genomics and Genome Evolution[J]. Genetics,2000,154: 1773-1784.
Naruse K, Tanaka M, Mita K, et al. A medaka gene map:the trace of ancestral vertebrateproto- chromosomes revealed by comparative gene mapping[J]. Genome Res,2004,14:820-828.
Neff B. Genetic paternity analysis and breeding success in bluegill sunfish (Lepomis macrochirus) [J]. Journal of Heredity,2001,92:111-119.
Nichols K M, Young W P, Danzmann R G, et al. A consolidated linkage map for rainbow trout (Oncorhynchus mykiss)[J]. Anim Genet,2003,34:102-115.
Ning Y, Liu X, Wang Z Y.et al. A genetic map of large yellow croaker Pseudosciaena crocea[J]. Aquaculture,2007,264(1):16-26.
O'Hara E, Nishimura T, Nagakura Y, et al. Genetic linkage maps of two yellowtails (Seriola quinqueradiata and Seriola lalandi)[J].Aquaculture,2005,244:41-48.
O'Malley K G, Sakamoto T, Danzmann R G, et al. Quantitative trait loci for spawning date and body weight in rainbow trout:testing for conserved effects acrsoo ancestrally duplicated chromosomes[J]. J Heredity,2003,94 (4) 273-284.
Ozaki A, Sakamoto T. et al. Quantitative trait loci (QTLs) associated with resistance/susceptibility of infectious pancreatic necrosis (IPN) in rainbow trout (Oncorhynchus mykiss)[J]. Molecular Genetics and Genomics,2001,265:23-31.
Palti Y, Shirak A, Hulata G, et al. Detection of genes with deleterious alleles in an inbred line of tilapia (Oreochromis aureus)[J]. Aquaculture,2002,206:151-164.
Perez-Enriquez R, Takagi M, Taniguchi N. Genetic variability and pedigree tracing of a hatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatellite DNA markers[J]. Aquaculture,1999,173: 413-423.
Postlethwait J H, Johnson S L, Midson C N, et al. A genetic linkage map for the zebrafish[J]. Science,1994,264:699-703.
Powell W, Morgante M, Andre C. The comparison of RFLP, RAPD and SSR (microsatellite) markers for germplasm analysis[J]. Mol Breed,1996,2: 225-238.
Presa P, Guyomard R. Conservation of microsatellites in three species of salmonids[J]. J Fish Biol,1996,49:1326-1329.
Primmer C R, M(?)ller A P, Ellegren H. A widerange survey of cross-species microsatellite amplifcation in birds[J]. Mol Ecol,1996,5:365-378.
Qin Y, Liu X, Zhang H, et al. Genetic mapping of size-related quantitative trait loci (QTL) in the bay scallop (Argopecten irradians) using AFLP and microsatellite markers [J]. Aquaculture,2007,272:281-290.
Quillet M C, Madjidian N, Griveau Y, et al. Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus[J]. TAG Theoretical and Applied Genetics,1995,91:1195-1202.
Ren P, Wang Z Y, Yao C L, et al. Development of 11 polymorphic microsatellite loci in the small abalone(Haliotis diversicolor Reeve)[J]. Molecular Ecology Resources,2008,8:1390-1392.
Rexroad C E, Rodriguez M F, Coulibaly I, et al. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)[J]. BMC Genomics,2005,6:54-62.
Rice W R. Analysis tables of statistical tests[J]. Evolution,1989,43:223-225.
Richardson J. Report on the ichthyology of the seas of China and Japan. Brit. Ass. Adv. Sci. Rep,1846,15th Meeting (1845),187-320.
Rico C, Rico I, Hewitt G.470 million years of conservation of microsatellite loci among fish species[J]. Proc R Soc Lond,1996,263:549-557.
Rodzen J, Famula T, May B. Estimation of parentage and relatedness in the polyploid white sturgeon (Acipenser transmontanus) using a dominant marker approach for duplicated microsatellite loci[J]. Aquaculture,2004,232:165-182.
Rohrer G A, Alexander L J, Smith J W, et al. A comprehensive map of the porcine genome[J]. Genome Res,1996,6:371-391.
Sakamoto T, Danzmann R G, Gharbi K, et al. A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates [J]. Genetics,2000,155:1331-1345.
Sambrook J, Fritsch E F, Maniatis T. Molecular cloning a laboratory manual,2nd edn[M]. New York:Cold Spring Harbor Laboratory Press,1989.
Schlotterer C, Amos B, and Tautz D. Conservation of polymorphic simple sequence loci in cetacean species[J]. Nature,1991,354:63-65.
Sekino M, Hara M. Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers. Genetics,2007,175:945-958.
Sekino M, Saitoh K, Yamada T, et al. Microsatellite-based pedigree tracing in a Japanese flounder Paralichthys olivaceus hatchery strain:implications for hatchery management related to stock enhancement program[J]. Aquaculture, 2003,221 (1-4):255-263.
Serapion J, Kucuktas H, Feng J, et al. Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish(Ictalurus punctatus)[J]. Mar Biotechnol,2004,6:364-377.
Shimoda N, Knapik E W, Ziniti J, et al. Zebrafish genetic map with 2000 microsatellite markers [J]. Genomics,1999,58:219-232.
Shirak A, Palti Y, Cnaani A, et al. Association between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia(Oreochromis aureus)[J]. J Hered,2002,93 (4):270-6.
Shirak A, Seroussi E, Cnaani A, et al. Amh and Dmrta2 genes map to tilapia (Oreochromis spp.) linkage group 23 within QTL regions for sex determination[J]. Genetics,2006,174:1573-1581.
Sia E A, Kokoska R J, Dominska M, et al. Microsatellite instability in yeast: dependence on repeat unit size and DNA mismatch repair genes [J]. Mol Cell Biol,1997,17:2851-2858.
Singer A, Perlman H, Yan Y, etc. Sex-specific recombination rates in Zebrafish (Danio rerio)[J]. Genetics,2002,160:649-657.
Silver L M. Use gentetics:Concepts and application[M]. NewYork:Oxford Univesity Press,1995.
Smith G P. Evolution of repeated DNA sequences by unequal crossover[J]. Science, 1976,191:528-535.
Soller M, Brody T, Genizi A. On the power of experimental design for the detection of linkage between marker loci and quantitative loci in crosses between inbred lines[J]. Theor Appl Genet,1976,47:35-39.
Stam P. Construction of integrated genetic linkage maps by means of a new computer package-JOINMAP[J]. Plant J,1993,3:739-744.
Sueoka N. On the genetics basis of variation and heterogeneity of DNA base composition[J]. Proc Natl Acad Sci USA,1962,48:582-592.
Sugama K, Taniguchi N, Umeda S. An experimental study on genetic drift in hatchery population of red sea bream[J]. Nippon Suisan Gakkaishi,1988,54:734-744
Suiter K A, Wendel J F, Case J S. Linkage-1:A pascal computer program for the dection and analysis of genetic linkage[J]. J Hered,1983,74:203-204.
Sun X, Liang L. A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance[J]. Aquaculture,2004,238: 165-172.
Tan Y D, Wan C, Zhu Y, et al. An amplified fragment length polymorphism map of the silkworm [J]. Genetics,2001,157:1277-1284.
Taniguchi N, Sumantadimata K, Iyama S. Genetic change in the first and second generations of hatchery stock of black sea bream[J]. Aquaculture,1993,35: 309-320
Tanksley S D, Young N D, Paterson A H. RFLP mapping in plant breeding:new tools for an old science [J]. Biotechnology,1989,7:257-264.
Tautz D. Hypervariability of simple sequences as a general source for polymorphic DNA markers [J]. Nucleic Acids Res,1989,17:6463-6471.
Tompson D, Scott A P. An analysis recombination data in gynogenetic diploid rainbow trout[J]. Heredity,1984,53:441-452.
Tong J, Lehnert S A, Byrne K, et al. Development of polymorphic EST markers in Penaeus monodon:applications in penaeid genetics[J]. Aquaculture,2002, 208:69-79
Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes:survey and analysis [J]. Genome Res,2000,10:967-981.
Triantafyllidis A, Krieg F, Cottin C, et al. Genetic structure and phylogeography of European catfish (Silurus glanis) populations[J]. Mol. Ecol,2002,11: 1039-1055.
Van Lith H A, and Van Zutphen L F. Characterization of rabbit DNA microsatellites extracted from the EMBL nucleotide sequence database [J]. Anim Genet,1996, 27:387-395.
Van Oosterhout C V, Hutchinson W F, Willis P M, et al. Micro-Checker:software for identifying and correcting genotyping errors in microsatellite data [J]. Mol Ecol Notes,2004,4:535-538.
Velmala R J, Vilkki H J, Elo K T, et al. A search for quantitative trait loci for milk production traits on chromosome 6 in Finnish Ayrshire cattle[J]. Animal Genetics,1999,30:136-143.
Voorrips R E. MapChart:Software for the graphical presentation of linkage maps and QTLs[J]. J Hered,2002,93:77-78.
Vos P, Hogers R, Bleeker M, et al.AFLP:a new technique for DNA fingerprinting[J]. Nucleic Acids Res,1995,23:4407-4414.
Waldbieser G C, Bosworth B G, Nonneman D J, et al. A microsatellite-based genetic linkage map for channel catfish, Ictaluruspunctatus[J]. Genetics,2001,158: 727-734.
Wan X, Chen X. Molecular characterization and expression analysis of interferon-inducible protein 56 gene in large yellow croaker Pseudosciaena crocea[J]. Journal of Experimental Marine Biology and Ecology.2008,364: 91-98.
Wang C M, Zhu Z Y, Lo L C, et al. A Microsatellite Linkage Map of Barramundi, Lates calcarifer[J]. Genetics,2007,175:907-915.
Wang C M, Lo L C, Feng F, et al. Identification and verification of QTL associated with growth traits in two genetic backgrounds of Barramundi (Lates calcarifer)[J]. Animal Genetics,2007,39:34-39.
Wang C M, Lo L C, Zhu Z Y, et al. A genome scan for quantitative trait loci affecting growth-related traits in an F1 family of Asian seabass (Lates calcarifer)[J]. BMC Genomics,2006,7:274-287.
Wang D, Liao X L, Cheng L, et al. Development of novel EST-SSR markers in common carp by data mining from public EST sequences [J]. Aquaculture,2007, 271:558-574.
Wang H X, Li F H, Xiang J H. Polymorphic EST-SSR markers and their mode of inheritance in Fenneropenaeus chinensis[J]. Aquaculture,2005,249:107-114.
Wang L L, Chang Y Q, Xu W, et al.A preliminary geneticmap of Zhikong scallop (Chlamys farreri Jones et Preston 1904)[J]. Aquaculture,2005,36:643-653.
Wang Z, Weber J L, Zhong G, et al. Survey of plant short tandem DNA repeats[J]. TAG Theoretical and Applied Genetics,1994,88:1-6.
weber J L. Informativeness of human (dc-da)n (dg-dt)n polymorphisms[J]. Genomics, 1990,7:524-30.
Weber J L, and May P E. Abundant class of human DNA polymorghisms which can be typed using the polymorphism chain reaction[J]. Am J Hum Genet,1989,44: 388-396.
Weber J L, and Wong C. Mutation of human short tandem repeats[J]. Hum Mol Genet, 1993,2:23-1128.
Welsh J, McClell M. Fingerprinting genomes using PCR with arbitrary primers[J]. Nucleic Acids Res,1990,18:7213-7218.
Williams J G, Kubelik A R, Livak K J, et al. DNA polymorphism amplified by arbitrary primers are useful as genetic markers[J]. Nucleic Acids Res,1990,18: 6531-6535.
Woods I G, Kelly P D, Chu F, et al. A Comparative map of the zebrafish genome[J]. Genome Res,2000,10:1903-1914.
Woram R A, McGowan C, Stout J A, et al. Agenetic linkage map for Arctic char (Salvelinus alpinus):evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents[J]. Genome,2004,47: 304-315.
Xu P S, Wang L, Liu E, et al. Generation of channel catfish BAC end sequences for marker development and assessmentof syntenic conservation with other fish species[J]. Anim Genet,2006,37:321-326.
Xu S Z. Theoretical Basis of the Beavis Effect[J]. Genetics,2003,165:2259-2268.
Yao C L, Kong P, Wang Z Y, et al. Cloning and expression analysis of two alternative splicing toll like receptor 9 isoforms A and B in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology,2008,25(5):648-656.
Yao C L, Kong P, Wang Z Y, et al. Molecular cloning and expression of MyD88 in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology, 2009,26(2):249-255.
Yao C L, Kong P, Huang X N, et al. Molecular Cloning and expression of IRF1 in large yellow croaker, Pseudosciaena crocea[J]. Fish & Shellfish Immunology, 2010,28:654-660.
Young W P, Wheeler P A, Coryell V H, et al. A detailed linkagemap of rainbow trout produced using doubled haploids[J]. Genetics,1998,148:839-850.
Yue G H, Ho M Y, Orban L, et al. Microsatellites within genes and ESTs of common carp and their applicability in silver crucian crap[J]. Aquaculture,2004,234: 85-98.
Yu Z.and Guo X. A basic AFLP linkage map for the eastern oyster, Crassostrea virginica Gmelin[J]. Journal of Shellfish Research,2002,21(1):382.
Yu Z, Guo X. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin[J]. Biol Bull,2003,204:327-338.
Zabeau M, Vos P. Selective restriction fragment amplification:a general method for DNA fingerprinting [P]. European Patent Application 94202629.7 (Publication No.0534858A1). Paris:European Patent Office,1992.
Zamir D, Tadmor Y. Unequal segregation of nuclear genes in plants [J]. Botanical Gazette,1986,147:355-358.
Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation:a review[J]. Mol Ecol,2002,11:1-16.
Zeng Z B. Precision mapping of quantitative trait loci[J]. Genetics,1994,136: 1457-1468.
Zhan A B, Bao Z M, Wang X L, et al. Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags[J]. Fish Sci,2005,71: 1341-1346.
Zhang J Z, Ao J Q, Chen X H. Molecular and functional characterization of a novel CC chemokine in large yellow croaker(Pseudosciaena crocea)[J]. Fish & Shellfish Immunology,2008,25:664-671.
Zhang Q, Allen S K, Reece K S.Genetic variation in wild and hatchery stocks of suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers[J]. Mar Biochnol,2005,7:588-599.
Zhao W, Miao X, Jia S. Isolation and characterization of microsatellite loci from the mulberry, Morus L. [J]. Plant Sci,2005,168:519-525.
Zhu J, Weir B S. Mixed model approaches for genetic analysis of quantitative traits[A]. In:Chen L S, Ruan S G, Zhu J (eds). AdvancedTopcis in Biomathematics proceedings of international conference on mathematical biology[C]. Singapore:World Scientific Publishing Co,1998,321-330.