不同类型土壤纤毛虫分类学与分子系统发育研究
详细信息    本馆镜像全文|  推荐本文 |  |   获取CNKI官网全文
摘要
土壤纤毛虫是土壤生态系统中的重要组成部分,位于异养真核生物网的底层。对其多样性的研究是研究纤毛虫对环境变化指示作用的基础。本工作对东营、昌邑等地的不同类型盐碱土壤中的纤毛虫通过非淹没培养皿法、活体观察、蛋白银染色等方法进行的形态学及纤毛图式等进行了研究,以及对其中的一些种类进行了SSU rDNA测序及系统发育研究,共分离、鉴定了16种纤毛虫。
     主要内容包括以下三个方面:
     (1)描述了7新种:多变双列虫(Bistichella variabilis),三列沙特虫(Saudithrix tristichella),排伪瘦尾虫(Uroleptoides stichus),中华腹柱虫(Gastrostyla sinensis),四核腹柱虫(Gastrostyla quadrinucleata),尾毛戴维虫(Deviata caudicirrata),双核片尾虫(Urosoma binucleata)。并包括了其中4种的发生过程中的某些阶段。
    
     (2)提取了以下8种土壤纤毛虫的DNA,并对它们的SSU rDNA进行了测序及系统发育分析:多变双列虫(Bistichella variabilis),三列沙特虫(Saudithrix tristichella ),颗粒半小双虫( Hemiamphisiella granulifera ),排伪瘦尾虫(Uroleptoides stichus),中华腹柱虫(Gastrostyla sinensis),四核腹柱虫(Gastrostyla quadrinucleata),尾毛斜裂虫(Deviata caudicirrata),敏捷拟片尾虫(Urosomoida agilis)。
     (3)依据所采集到的样品,对9个已知的种类依据统计数据进行了补充描述并与相近种进行了对比:长颗粒尖毛虫(Oxytricha longigranulosa),变藓棘毛虫(Sterkiella histriomuscorum),敏捷拟片尾虫(Urosomoida agilis),颗粒半小双虫(Hemiamphisiella granulifera),近缘殖口虫(Gonostomum affine),拟殖口殖口虫(Gonostomum gonostomoidum),澳洲支柱虫(Cladotricha australis),陆生无柱虫(Eschaneustyla terricola),六列水滴伪康纤虫(Pseudocohnilembus persalinus hexakineta)。
Soil ciliates are at the base of the heterotrophic eukaryotic food web and an essential component in soil ecosystems. Studies of their diversity are the bases for assessing and monitoring environmental changes using ciliates. In this study ciliates from different saline soils from Dongying, Changyi, and some other place were studied morphologically using living observation and protargol impregnation. And SSU rDNA phylogenies of some of these species were studied. The results of identification, classification and phylogenies of these species are summarized as
     follows:
     (1) Seven new species: Bistichella variabilis, Saudithrix tristichella, Uroleptoides stichus, Gastrostyla sinensis, Gastrostyla quadrinucleata, Deviata caudicirrata, Urosoma binucleata.
     (2) SSU rDNA sequences of 8 species were acquired and analyzed: Bistichella variabilis, Saudithrix tristichella, Hemiamphisiella granulifera, Uroleptoides stichus, Gastrostyla sinensis, Gastrostyla quadrinucleata, Deviata caudicirrata, Urosomoida agilis.
     (3) 9 species were redescribed based on the new populations: Oxytricha longigranulosa, Sterkiella histriomuscorum, Urosomoida agilis, Hemiamphisiella granulifera, Gonostomum affine, Gonostomum gonostomoidum, Cladotricha australis, Eschaneustyla terricola, Pseudocohnilembus persalinus hexakineta.
引文
[1]崔振东长白山森林生态系统土壤原生动物初步研究.森林生态系统研究, 1983,3:144--153.
    [2]冯伟松,余育和南极菲尔德斯半岛地区土壤原生动物生态学研究.水生生物学报, 2000, 24(6): 610--615.
    [3]冯伟松,杨军,叶志鸿等凡口铅锌湿地处理系统的土壤原生动物.动物学杂志, 2004, 39(1): 2--11.
    [4]缪炜,余育和,沈韫芬纤毛虫分子系统发育学的研究进展动物学杂志, 2002, 37(1): 67--71.
    [5]刘娜,宁应之等兰州市东岗区污染土壤中的原生动物物种多样性.甘肃科技, 2007, 23(4): 9--10.
    [6]卢云中,宁应之等兰州市雁儿湾污水处理厂活性污泥中纤毛虫春季群落特征.西北师范大学学报(自然科学版), 2007, 43(2): 72--76.
    [7]马正学,申海香,宁应之等甘肃小陇山桃花沟森林公园土壤纤毛虫的群落特征.生态学杂志, 2008, 27(2): 208--212.
    [8]马正学,秦浩,刘有斌,宁应之崆峒山风景名胜区土壤纤毛虫群落特征.西北师范大学学报(自然科学版), 2009, 45(3): 93--99.
    [8]马正学,宁应之等焦化废水污染土壤中原生动物的群落特征.西北师范大学学报(自然科学版), 2007, 43(5): 90--93.
    [9]宁应之,沈韫芬中国典型地带土壤原生动物食性的观察.动物学研究, 1998, 19(5): 397--400.
    [10]宁应之,沈韫芬珞珈山森林土壤原生动物生态学研究及土壤原生动物定量方法探讨.动物学研究, 1996, 17(3): 225--232.
    [11]宁应之,沈韫芬中国典型地带土壤原生动物: I.区系特征和物种分布. 1998, 44(1): 5--10.
    [12]宁应之,沈韫芬中国典型地带土壤原生动物: II.生态学研究.动物学报, 1998, 44(3): 271--276.
    [13]宁应之,沈韫芬中国土壤原生动物新纪录种(纤毛虫们:寡膜纲).动物学杂志, 1999, 34(6): 2--4.
    [14]宁应之,沈韫芬中国典型地带土壤原生动物群落结构及其特征.西北师范大学学报(自然科学版), 1999, 35(2): 50--54.
    [15]宁应之,沈韫芬中国典型地带29中土壤纤毛虫记述.西北师范大学学报(自然科学版), 1999, 35(3): 75--82.
    [16]宁应之,沈韫芬中国土壤原生动物新纪录种(纤毛虫门:多膜纲:异毛目).动物学杂志, 2000, 35(1): 2--4.
    [17]宁应之,王娟等甘肃天水麦积山风景名胜区土壤纤毛虫的物种多样性.动物学研究, 2007, 28(4): 367--373.
    [18]施心路,魏红尖毛虫属一新种,史氏尖毛虫的形态学研究(纤毛动物门:腹毛目:尖毛虫科). 1997, 22(3): 225--229.
    [19]宋碧玉中国土壤原生动物纤毛亚门Ciliophora 2新纪录.武汉大学学报(工学版), 1993, 26: 718--720.
    [20]宋碧玉天目山土壤原生动物生态背景值研究.生态学报, 1995, 15(3): 336--338.
    [21]宋微波, N.维尔伯特青岛拟瘦尾虫,新种的形态学与纤毛下器.动物分类学报, 1989,14(4): 390--395.
    [22]宋微波九脊游仆虫(Euplotes novemcarinata Wang, 1930)的纤毛下器与银线系研究(纤毛动物门,腹毛目),青岛海洋大学学报, 1991, 21(1): 76--84.
    [23]宋微波青岛地区土壤纤毛虫区系—I.动基片纲,寡膜纲,肾形纲.青岛海洋大学学报, 1994, 24(1): 15--23.
    [24]宋微波长颈虫属两种土壤纤毛虫研究(动基片纲:钩刺目).动物分类学报, 1994, 19(4): 385--391.
    [25]宋微波,徐奎栋纤毛虫原生动物形态学研究的常用方法.海洋科学, 1994, 6: 6--9.
    [26]宋微波等.原生动物学专论.青岛:青岛海洋大学出版社,1999. 1--362.
    [27]宋微波等译.原生生物学.青岛:中国海洋大学出版社,2007. 1--372.
    [28]孙宏飞,马正学,宁应之等皮革废水污染的土壤原生动物生态效应.甘肃科学学报, 2007, 19(1): 82--84.
    [29]王冬,宁应之等新疆石河子市蘑菇湖混合污水污染土壤中原生动物的群落特征.西北师范大学学报(自然科学版), 2007, 43(1): 83--86.
    [30]徐润林,孙逸湘大鹏半岛土壤纤毛虫的群落特点.应用生态学报, 2000, 11(3): 428--430.
    [31]张汉光,周淑美济南地区几种环境土壤内原生动物的研究.山东师范大学学报(自然科学版), 1990, 2.
    [33]周可新,许木启,曹宏,宁应之土壤原生动物在环境监测中的应用.动物学杂志, 2004, 38(1): 80--84.
    [34] Berger, H. & Foissner, W., The morphogenesis of Kahliella franzi (Foissner, 1982) nov. comb. and Oxytricha gigantea Horváth, 1933 (Ciliophora, Hypotrichida). Arch Prostistenkd., 1988, 136: 65--77.
    [35] Berger, H. & Foissner, W., Morphology and biometry of some soil hypotrichs (Protozoa: Ciliophora). Zool. Jb. Syst., 1987, 114: 193--239.
    [36] Berger, H., 1999. Monograph of the Oxytrichidae (Ciliophora, Hypotrichia). Kluwer Adademic Publishers. 1--1080.
    [37] Berger, H., Amphisiella annulata (Kahl, 1928) Borror, 1972 (Ciliophora: Hypotricha): morphology, notes on morphogenesis, review of literature, and neotypification. Acta protozool., 2004, 43: 1--14.
    [38] Berger, H., 2006. Monograph of the Urostyloidea (Ciliophora, Hypotricha). Springer. 1--1303.
    [39] Berger, H., AL-Rasheid, K., & Foissner, W., Morphology and cell division of Saudithrix terricola n. gen., n. sp., a large, stichotrich ciliate from Saudi Arabia. J. Eukaryot. Microbiol., 2006, 53: 260--268.
    [40] Berger, H., Monograph of the Amphisiellidae and Trachelostylidae (Ciliophora, Hypotricha). Springer. 2008 :1--737.
    [41] Berger, H., 2011. Monograph of the Gonostomatidae and Kahliellidae (Ciliophora, Hypotricha). Springer. 2011: 1--741.
    [42] Blatter, H., & Foissner, W., Beitrag zur terricolen Ciliatenfauna (Protozoa: Ciliophora). Stapfia, 1988, 17: 1--84.
    [43] Calkins, G., Uroleptus Halseyl n. sp. I. The effect of ultra-violet rays. Biol bull., 1929, 57: 5--68.
    [44] Chao, A., Li, C., Agatha, S. & Foissner, W., A statistical approach to estimate soil ciliate diversity and distribution based on data from five continents. OIKOS, 2006, 114: 479--493.
    [45] Eigner, P., & Foissner, W., Orthoamphisiella stramenticola nov. gen., nov. spec., a new hypotrichous ciliate (Ciliophora: Hypotrichida) occurring in walnut leaf litter. Acta Protozool., 1991, 30: 129--133.
    [46] Eigner, P., Divisional morphogenesis and reorganization in Eschaneustyla brachytona Stokes, 1886 and revision of the Bakuellinae (Ciliophora, Hypotrichida). Eur. J. Protistol., 1994, 30: 462--475.
    [47] Eigner, P. & Foissner, W., Divisional morphogenesis in Amphisiellides illuvialis n. sp., Paramphisiella caudata (Hemberger) and Hemiamphisiella terricola Foissner, and redefinition of the Amphisiellidae (Ciliophora, Hypotrichida). J. Euk. Microbiol., 1994, 41: 24--261.
    [48] Eigner, P., Divisional morphogenesis in Deviata abbrevescens nov. gen., nov. spec., Neogeneia hortualis nov. gen., nov. spec., and Kahliella simplex (Horvath) Corliss and redefinition of the Kahliellidae (Ciliophora, Hypotrichida). Eur. J. Protistol., 1995, 31: 341--366.
    [49] Eigner, P., Evolution of morphogenetic process in the Orthoamphisiellidae n. fam., Oxytrichidae, and Parakahliellidae n. fam., and their depiction using a computer method (Cliophora, Hypotrichida). J. Eukaryot. Microbiol., 1997, 44: 553--573.
    [50] Fenchel, T. & Finlay, B., The ubiquity of small species: patterns of local and global diversity. BioScience., 2004, 54: 777--784.
    [51] Finlay, B., Corliss, J. & Esteban, G., Biodiversity at the microbial level: the number of free-living ciliates in the biosphere. Q. Rev. Biol., 1996, 72: 22--237.
    [52] Finlay, B., The global diversity of protozoa and other small species. Int. J. Parasitol., 1998, 28: 29--48.
    [53] Finlay, B., Esteban, G., Olmo, J. & Tyler, P., Global distribution of free-living microbial species. Ecography, 1999, 22:138--144.
    [54] Finlay, B., Esteban, G., Exploring leeuwenhoek’s legacy: the abundande and diversity of protozoa. Int.Microbiol., 2001, 4: 125--133.
    [55] Finlay, B., Global dispersal of free-living microbial eukaryote specie. Science, 2002, 296: 1061--1063.
    [56] Finlay, B., Esteban, G. & Fenchel, T. Prostist diversity is different? Protist, 2004, 155: 15--22.
    [57] Foissner, W., Ecology and taxonomy of the hypotrichida (Protozoa, Ciliophora) of some Austrian soils. Arch. Protistenk., 1982, 126: 19--143.
    [58] Foissner W., Infraciliatur, Silberliniensystem und Biometrie einiger neuer und wenig bekannter terrestrischer, limnischer und mariner Ciliaten (Protozoa: Ciliophora) aus den Klassen Kinetofragminophora, Colpodea und Polyhymenophora. Stapfia 1984, 12: 1--165.
    [59] Foissner, W., Soil protozoa: fundamental problems, ecological significance, adaptations in ciliates and testaceans, bioindicators, and guide to the literature. Progr. Protistol. 1987, 2: 69--212.
    [60] Foissner, W., Gemeinsame Arten in der terricolen Ciliatenfauna (Protozoa: Ciliophora) von Australien und Afrika. Stapfia, 1988, 17: 85--133.
    [61] Foissner, W., Morphologie und Infraciliatur einiger neuer und wenig bekannter terrestrisher und limnischer Ciliaten (Protozoa, Ciliophora). Sber ?st Akad Wiss, Mathematish-naturwissenschaftliche Klasse, Abt I 196, 1989. 173--247.
    [62] Foissner, W., Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa. Eur. J. Protistol., 1991, 27: 313--330.
    [63] Foissner, W., Global soil ciliate (Protozoa, Ciliophora) diversity : a probability-based approach using large sample collections from Africa, Australia and Antarctica. Biodiversity conserv., 1997, 6: 1627--1683.
    [64] Foissner, W., Protozoa as bioindicators in agroecosystems, with emphasis on farming practices, biocides, and biodiversity. Agric. Ecosyst. Environ., 1997, 62: 93--103.
    [65] Foissner, W., Soil protozoa as bioindicators: pros and cons, methods, divesity, representative examples. Agric. Ecosyst. Environ., 1999, 74: 95--112.
    [66] Foissner, W., Protist diveristy: estimates of the rear-imponderable. Prostist, 1999, 150: 363--368.
    [67] Foissner, W., Stoeck, T., Schmidt, H. & Berger, H., Biogeographical differences in a common soil ciliate, Gonostomum affine (Stein), as revealed by morphological and RAPD-Fingerprint analysis. Acta protozool., 2001, 40: 83--97.
    [68] Foissner, W., Agatha, S. & Berger, H., Soil ciliates (Protozoa, Ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha region and the Namib Desert. Denisia 2002, 5: 1--1459.
    [69] Foissner, W., Staay, S., Staay, G., Hackstein, J., Krautgartner, W. & Berger, H., Reconciling classical and molecular phylogenies in the stichotrichines (Ciliophora, Spirotrichea), including new sequences from some rare species. Eur. J. Protistol., 2004, 40: 265--281.
    [70] Foissner, W., Protist divesity and distribution: some basic considerations. Biodiversity Conserv. 2008, 17: 235--242.
    [71] Foissner, W., Chao, A. & Katz, L., Diversity and geographic distribution of ciliates (Protissa: Ciliophora). Biodiversity conserv., 2008, 17: 345--363.
    [72] Grolière, C., Descriptions de quelques ciliés hypotriches des tourbieres a sphaignes et des etendues d'eau acides. Protistologica. 1975, 4: 481--498.
    [73] Gouy, M., Guindon, S. & Gascuel, O., Seaview version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol., 2010, 27: 221--224.
    [74] Guindon, S. & Gascuel, O., A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol., 2003, 52: 696--704.
    [75] Hemberger, H., Rivision der Ordnung Hypotrichida Stein (Ciliophora, Protozoa) an Hand von Protargolpr?paraten und Morphogenesedarstellungen. Dissertation Universit ?t Bonn. 1982.
    [76] Hemberger, H., Neue Gattungen und Arten hypotricher Ciliaten. Arch. Protistenk., 1985, 130: 397--417.
    [77] Hall, T., Bioedit. A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp. Ser., 1999, 41: 95--98.
    [78] Jankowski, W., The revision of the system of Polyhemenophora class (Spirotrichia). Tezisy Dokl zool Inst Akad Nauk RRRR year 1978, 39--40.
    [79] Jiang, J., Zhang, Q., Warren, A., Al-Rasheid, K. & Song, W., Morphology and SSU rRNA gene-based phylogeny of two marine euplotes species, E. orientalis spec. nov. and E. raikovi agamaliev, 1966 (Ciliophora, Euplotida). Eur. J. Protistol., 2010, 46: 121--132.
    [80] Kamra, K., Kurmar, S., & Sapra G., Species of Gonostomum and Paragonostomum (Ciliophora, Hypotrichida, Oxytichidae) from the Valey of Flowers, India, with descriptions of Gonostomum singhii sp. nov., Paragonostomum ghangriai sp. nov. and Paragonostomum minuta sp. nov. J. Microbiol., 2008, 48: 372--388.
    [81] Kim, Y., & Shin, M., Redescription of Gonostomum algicola and G. gonostomoida (Ciliophora: Spirotrichea) unknown from Korea. J syst Zool., 2006, 22: 209--215.
    [82] Xu, K. & Lei, Y., A new spirofilid ciliate from the Yellow Sea: Metastrongylidium distichum n. gen., n., sp. (Ciliophora, Stichotrichia). Acta Protozool., 2007, 46: 121--129.
    [83] Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., Mcgettigan, P.A., Mcwilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J. & Higgins, D.G., Clustal W and clustal X version 2.0. Bioinformatics, 2007, 23: 2947--2948.
    [84] Li, L., Huang, J., Song, W., Shin, M., Al-Rasheid, K. & Berger, H., Apogastrostyla rigescens (Kahl, 1932) gen. nov., comb. nov. (Ciliophora, Hypotricha): morphology, notes on cell division, SSU rRNA gene sequence data, and neotypification. Acta Protozool., 2010, 49: 195--212.
    [85] Lynn, D.H., The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature, 3rd ed. Dordrecht: Springer, 2008. p. 1--605.
    [86] Medlin, L., Elwood, H., Stickel, S. & Sogin, M., The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 1988, 71: 491--499.
    [87] Ning, Y., Liu, H., Liu, N., Sun, H., Zhang C., Du, H., Wang, H., & Ma, Z., One new species and five new records of soil ciliates (Protozoa, Ciliophora) in China. Acta Zootaxonomica sinica. 2009, 34: 699--708.
    [88] Paiva, T. D. S., Da Silva-Neto, I. D., Morphology and morphogenesis of Strongylidum pseudocrassum Wang and Nie, 1935, with redefinition of Stronglidium Sterki, 1878 (Protisa: Ciliophora: Stichotrichia). Zootaxa, 2007, 1559: 31--57.
    [89] Paiva, T., Borges, B., Harada, M. & Silva-Neto, I., Comparative phylogenetic study of Stichotrichia (Alveolata: Ciliophora: Spirotrichea) based on 18S-rDNA sequences. Genet. Mol. Res., 2009, 8: 223--246.
    [90] Posada, D. & Crandall, K.A., Modeltest: testing the model of DNA substitution. Bioinformatics, 1998, 14: 817--818.
    [91] Ronquist, F. & Huelsenbeck, J.P., Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics., 2003, 19: 1572--1574.
    [92] Schmidt, S.L., Bernhard, D., Schlegel, M. & Foissner, W., Phylogeny of the Stichotrichia (Ciliophora; Spirotrichea) reconstructed with nuclear small subunit rRNA gene sequences: discrepancies and accordances with morphological data. J. Eukaryot. Microbiol., 2007, 54: 201--209.
    [93] Wilbert, N., Eine verbesserte Technik der Protargolimpr?gnation für Ciliaten. Mikrokosmos. 1975, 64: 171--179.
    [94] Wilbert, N., Benthic ciliates of salt lakes. Acta Protozool., 1995, 34: 27--188.
    [95] Wirnsberger-Aescht, E., Foissner, W. & Foissner, I., Morphogenesis and ultrastructure of the soik ciliate Engelmanniella mobilis (Ciliophora, Hypotrichida). Eur. J. Protistol., 1989, 24: 354--368.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700