Pyramiding of the dep1-1 and NAL1~(NJ6) alleles achieves sustainable improvements in nitrogen-use efficiency and grain yield in japonica rice breeding
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摘要
<正>Rice is one of the most important cereal crops in the world, and a substantial increase in grain yield is necessary for food security.However, high yields of semidwarf modern rice varieties are heavily dependent on the application of mineral nitrogenous fertilizer(Tilman et al., 2002; Sun et al., 2014). Nitrogen(N)-insensitive responses associated with reduced N-use efficiency(NUE) is a major
引文
Fan,X.,Tang,Z.,Tan,Y.,Zhang,Y.,Luo,B.,Yang,M.,Lian,X.,Shen,Q.,Miller,A.,Xu,G.,2016.Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields.Proc.Natl.Acad.Sci.U.S.A.113,7118e7123.
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Hu,B.,Wang,W.,Ou,S.,Tang,J.,Li,H.,Che,R.,Zhang,Z.,Chai,X.,Wang,H.,Wang,Y.,Liang,C.,Liu,L.,Piao,Z.,Deng,Q.,Deng,K.,Xu,C.,Liang,Y.,Zhang,L.,Li,L.,Chu,C.,2015.Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies.Nat.Genet.47,834e838.
Huang,X.,Qian,Q.,Liu,Z.,Sun,H.,He,S.,Luo,D.,Xia,G.,Chu,C.,Li,J.,Fu,X.,2009.Natural variation at the DEP1 locus enhances grain yield in rice.Nat.Genet.41,494e497.
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Liu,Q.,Chen,X.,Wu,K.,Fu,X.,2015.Nitrogen signaling and use efficiency in plants:what's new?Curr.Opin.Plant Biol.27,192e198.
Qi,J.,Qian,Q.,Bu,Q.,Li,S.,Chen,Q.,Sun,J.,Liang,W.,Zhou,Y.,Chu,C.,Li,X.,Ren,F.,Palme,K.,Zhao,B.,Chen,J.,Chen,M.,Li,C.,2008.Mutation of the rice Narrow leaf1 gene,which encodes a novel protein,affects vein patterning and polar auxin transport.Plant Physiol.147,1947e1959.
Rahn,C.,Bending,G.,Lillywhite,R.,Turner,M.,2009.Co-incorporation of biodegradable wastes with crop residues to reduce nitrate pollution of groundwater and decrease waste disposal to landfill.Soil Use Manag.25,113e123.
Sun,H.,Qian,Q.,Wu,K.,Luo,J.,Wang,S.,Zhang,C.,Ma,Y.,Liu,Q.,Huang,X.,Yuan,Q.,Han,R.,Zhao,M.,Dong,G.,Guo,L.,Zhu,X.,Gou,Z.,Wang,W.,Wu,Y.,Lin,H.,Fu,X.,2014.Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.Nat.Genet.46,652e656.
Taguchi-Shiobara,F.,Ota,T.,Ebana,K.,Ookawa,T.,Yamasaki,M.,Tanabata,T.,Yamanouchi,U.,Wu,J.,Ono,N.,Nonoue,Y.,Nagata,K.,Fukuoka,S.,Hirabayashi,H.,Yamamoto,T.,Yano,M.,2015.Natural variation in the flag leaf morphology of rice due to a mutation of the NARROW LEAF 1 gene in Oryza sativa L.Genetics 201,795e808.
Tilman,D.,Cassman,K.,Matson,P.,Naylor,R.,Polasky,S.,2002.Agricultural sustainability and intensive production practices.Nature 418,671e677.
Wang,Q.,Nian,J.,Xie,X.,Yu,H.,Zhang,J.,Bai,J.,Dong,G.,Hu,J.,Bai,B.,Chen,L.,Xie,Q.,Feng,J.,Yang,X.,Peng,J.,Chen,F.,Qian,Q.,Li,J.,Zuo,J.,2018.Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice.Nat.Commun.9,735.
Wu,K.,Xu,X.,Zhong,N.,Huang,H.,Yu,J.,Ye,Y.,Wu,Y.,Fu,X.,2018.The rational design of multiple molecular module-based assemblies for simultaneously improving rice yield and grain quality.J.Genet.Genomics 45,337e341.
Yano,K.,Yamamoto,E.,Aya,K.,Takeuchi,H.,Lo,P.,Hu,L.,Yamasaki,M.,Yoshida,S.,Kitano,H.,Hirano,K.,Matsuoka,M.,2016.Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.Nat.Genet.48,927e934.
Zhang,G.,Li,S.,Wang,L.,Ye,W.,Zeng,D.,Rao,Y.,Peng,Y.,Hu,J.,Yang,Y.,Xu,J.,Ren,D.,Gao,Z.,Zhu,L.,Dong,G.,Hu,X.,Yan,M.,Guo,L.,Li,C.,Qian,Q.,2014.LSCHL4 from japonica cultivar,which is allelic to NAL1,increases yield of indica super rice 93-11.Mol.Plant 7,1350e1364.
Fujita,D.,Trijatmiko,K.,Tagle,A.,Sapasap,M.,Koide,Y.,Sasaki,K.,Tsakirpaloglou,N.,Gannaban,R.,Nishimura,T.,Yanagihara,S.,Fukuta,Y.,Koshiba,T.,Slamet-Loedin,I.,Ishimaru,T.,Kobayashi,N.,2013.NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.Proc.Natl.Acad.Sci.U.S.A.110,20431e20436.
Hu,B.,Wang,W.,Ou,S.,Tang,J.,Li,H.,Che,R.,Zhang,Z.,Chai,X.,Wang,H.,Wang,Y.,Liang,C.,Liu,L.,Piao,Z.,Deng,Q.,Deng,K.,Xu,C.,Liang,Y.,Zhang,L.,Li,L.,Chu,C.,2015.Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies.Nat.Genet.47,834e838.
Huang,X.,Qian,Q.,Liu,Z.,Sun,H.,He,S.,Luo,D.,Xia,G.,Chu,C.,Li,J.,Fu,X.,2009.Natural variation at the DEP1 locus enhances grain yield in rice.Nat.Genet.41,494e497.
Li,S.,Tian,Y.,Wu,K.,Ye,Y.,Yu,J.,Zhang,J.,Liu,Q.,Hu,M.,Li,H.,Tong,Y.,Harberd,N.,Fu,X.,2018.Modulating plant growth-metabolism coordination for sustainable agriculture.Nature 560,595e600.
Liu,Q.,Chen,X.,Wu,K.,Fu,X.,2015.Nitrogen signaling and use efficiency in plants:what's new?Curr.Opin.Plant Biol.27,192e198.
Qi,J.,Qian,Q.,Bu,Q.,Li,S.,Chen,Q.,Sun,J.,Liang,W.,Zhou,Y.,Chu,C.,Li,X.,Ren,F.,Palme,K.,Zhao,B.,Chen,J.,Chen,M.,Li,C.,2008.Mutation of the rice Narrow leaf1 gene,which encodes a novel protein,affects vein patterning and polar auxin transport.Plant Physiol.147,1947e1959.
Rahn,C.,Bending,G.,Lillywhite,R.,Turner,M.,2009.Co-incorporation of biodegradable wastes with crop residues to reduce nitrate pollution of groundwater and decrease waste disposal to landfill.Soil Use Manag.25,113e123.
Sun,H.,Qian,Q.,Wu,K.,Luo,J.,Wang,S.,Zhang,C.,Ma,Y.,Liu,Q.,Huang,X.,Yuan,Q.,Han,R.,Zhao,M.,Dong,G.,Guo,L.,Zhu,X.,Gou,Z.,Wang,W.,Wu,Y.,Lin,H.,Fu,X.,2014.Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.Nat.Genet.46,652e656.
Taguchi-Shiobara,F.,Ota,T.,Ebana,K.,Ookawa,T.,Yamasaki,M.,Tanabata,T.,Yamanouchi,U.,Wu,J.,Ono,N.,Nonoue,Y.,Nagata,K.,Fukuoka,S.,Hirabayashi,H.,Yamamoto,T.,Yano,M.,2015.Natural variation in the flag leaf morphology of rice due to a mutation of the NARROW LEAF 1 gene in Oryza sativa L.Genetics 201,795e808.
Tilman,D.,Cassman,K.,Matson,P.,Naylor,R.,Polasky,S.,2002.Agricultural sustainability and intensive production practices.Nature 418,671e677.
Wang,Q.,Nian,J.,Xie,X.,Yu,H.,Zhang,J.,Bai,J.,Dong,G.,Hu,J.,Bai,B.,Chen,L.,Xie,Q.,Feng,J.,Yang,X.,Peng,J.,Chen,F.,Qian,Q.,Li,J.,Zuo,J.,2018.Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice.Nat.Commun.9,735.
Wu,K.,Xu,X.,Zhong,N.,Huang,H.,Yu,J.,Ye,Y.,Wu,Y.,Fu,X.,2018.The rational design of multiple molecular module-based assemblies for simultaneously improving rice yield and grain quality.J.Genet.Genomics 45,337e341.
Yano,K.,Yamamoto,E.,Aya,K.,Takeuchi,H.,Lo,P.,Hu,L.,Yamasaki,M.,Yoshida,S.,Kitano,H.,Hirano,K.,Matsuoka,M.,2016.Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.Nat.Genet.48,927e934.
Zhang,G.,Li,S.,Wang,L.,Ye,W.,Zeng,D.,Rao,Y.,Peng,Y.,Hu,J.,Yang,Y.,Xu,J.,Ren,D.,Gao,Z.,Zhu,L.,Dong,G.,Hu,X.,Yan,M.,Guo,L.,Li,C.,Qian,Q.,2014.LSCHL4 from japonica cultivar,which is allelic to NAL1,increases yield of indica super rice 93-11.Mol.Plant 7,1350e1364.