搜索页_ Non-synonymous SNPs (nsSNPs)

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在“Elsevier电子期刊”中，命中：50条，耗时：小于0.01 秒

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1.Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in the human Quinone Oxidoreductase 1 (NQO1)

作者：Hidam Bishworjit Singh ^{hidam_bishworjit@yahoo.com} ; Dristi Deka ^{dristideka628@gmail.com} ; Dhiramani Das ^{dhiramanidas@rocketmail.com} ; Debasish Borbora ; ^{Debasish.borbora@gauhati.ac.in}

关键词：SNP ; Single nucleotide polymorphisms ; nsSNPs ; Non-synonymous SNPs ; NQO1 ; NAD(P)H Quinone Oxidoreductase 1 ; SIFT ; Sorting Intolerant from Tolerant ; PolyPhen ; phenotype polymorphism ; ROVEAN ; Protein Variation Effect Analyzer ; PDB ; Protein Data Bank ; GDT ; global distance test ; uGDT ; un-normalized GDT ; RMSD ; root mean squared deviation ; QMEAN ; Qualitative Model Energy Analysis ; ProSA ; Protein Structure Analysis ; UCSF ; University of California ; San Francisco

刊名：Meta Gene

出版年：2017

2.Computational analysis of nsSNPs of NPHS1 gene and their effect on protein structural stability

作者：Bhoomi B. Joshi ; Kinnari N. Mistry ; ^{kinnarimistry@aribas.edu.in} ; ^{kinnarinmistry@yahoo.com}

关键词：NPHS1 ; nephrosis-1-congenital ; finish type ; SNP ; single nucleotide polymorphisms ; SIFT ; sorting intolerant from tolerant ; PROVEAN ; protein variation effect ANalyzer ; nsSNP ; non-synonymous single nucleotide polymorphism ; PYMOL ; project molecular and cellular biology ; QMEAN ; qualitative model energy analysis ; FSGS ; focal segmental glomerulosclerosis ; SRNS ; steroid resistance nephrotic syndrome ; PPI ; protein-protein interaction

刊名：Meta Gene

出版年：2017

3.Predicting the effect of non synonymous SNPs in bovine TLR4 gene

作者：Chinmoy Mishra^a ; ^{drchinmoymishra@gmail.com} ; Subodh Kumar^b ; ^{subkum@gmail.com} ; H.M. Yathish^c ; ^{yathish.vety@gmail.com}

关键词：Bovine ; Gene ; SNP ; TLR4

刊名：Gene Reports

出版年：2017

4.Status and future perspectives of single nucleotide polymorphisms (SNPs) markers in farmed fishes: Way ahead using next generation sequencing

作者：Kiran Dashrath Rasal^a ; ^{kirancife@gmail.com} ; ^{Kiran.Rasal@icar.gov.in} ; Vemlawada Chakrapani^a ; Amrendra Kumar Pandey^a ; Avinash Rambhau Rasal^a ; Jitendra K. Sundaray^a ; Arun Ninawe^b ; Pallipuram Jayasankar^a

关键词：SNP ; single nucleotide polymorphism ; QTL ; quantitative trait loci ; NGS ; next generation sequencing ; ESTs ; expressed sequence tags ; GATK ; Genome Analysis Toolkit ; SSCP ; single strand conformation polymorphism ; GBS ; Genotyping-by-sequencing ; SIFT ; Sorting Intolerant from Tolerant ; nsSNPs ; non-synonymous single nucleotide polymorphisms ; AASs ; amino acid substitutions ; PROVEAN ; Protein Variation Effect Analyzer ; PDB ; Protein Data Bank

刊名：Gene Reports

出版年：2017

5.Human NEIL1 DNA glycosylase: Structure, function and polymorphisms

作者：Preety Kadian Singh ; Kinnari Mistry ; ^{kinnarimistry@aribas.edu.in} ; ^{kinnarinmistry@yahoo.com}

关键词：8-oxoG ; 8-dihydro-2&prime ; -deoxyguanosine ; 5-OHU ; 5-hydroxyuracil ; AP ; apurinic/apyrimidinic ; BER ; base excision repair ; CCA ; cholangiocarcinoma ; DHU ; 5 ; 6 dihydrouracil ; DSB ; double-strand breaks ; dRP ; deoxyribose phosphate ; Fapy-A ; 4 ; 6-diamino-5-formamidopyrimidine ; Fapy-G ; 2 ; 6-diamino-4-hydroxy-5-formamidopyrimidine ; FEN-1 ; flap-endonuclease 1 ; HhH ; helix-hairpin-helix ; KC ; keratoconus ; MeFapyG ; methylated 2.6-diamino-4-hydroxy-5-formamidopyrimidine ; MPG ; 3-methylpurine DNA glycosylase ; nsSNPs

刊名：Meta Gene

出版年：2017

6.Computational identification of non-synonymous polymorphisms within regions corresponding to protein interaction sites

作者：Blaz Skrlj ^{skrljblaz@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Tanja Kunej ; ^{tanja.kunej@bf.uni-lj.si" class="auth_mail" title="E-mail the corresponding author}

关键词：In silico ; PiSITE database ; Protein-protein interactions (PPIs) ; Non-synonymous SNPs (nsSNPs)

刊名：Computers in Biology and Medicine

出版年：2016

7.In silico analysis of nsSNPs in human methyl CpG binding protein 2

作者：Mansi Desai ; Jenabhai Chauhan ; ^{jenabhaichauhan@aribas.edu.in" class="auth_mail" title="E-mail the corresponding author} ; ^{jbc109@gmail.com" class="auth_mail" title="E-mail the corresponding author}

关键词：MECP2 ; methyl CpG binding protein 2 ; SNP ; single nucleotide polymorphism ; SIFT ; sorting intolerant from tolerant ; PolyPhen ; phenotype polymorphism ; nsSNP ; non synonymous single nucleotide polymorphism ; OMIM ; online Mendelian inheritance in man ; MUSTER ; multi-sources ThreadER ; NCBI ; National Center for Biological Information ; PANTHER ; protein analysis through evolutionary relationship ; SNPs&GO ; single nucleotide polymorphism database and gene ontology

刊名：Meta Gene

出版年：2016

8.A computational approach to determine susceptibility to cancer by evaluating the deleterious effect of nsSNP in XRCC1 gene on binding interaction of XRCC1 protein with ligase III

作者：Preety Kadian Singh ; Kinnari N. Mistry ; ^{kinnarimistry@aribas.edu.in" class="auth_mail" title="E-mail the corresponding author} ; ^{kinnarinmistry@yahoo.com" class="auth_mail" title="E-mail the corresponding author}

关键词：BER ; base excision repair ; DDG ; Gibbs free energy change ; GO ; gene ontology ; LIG3 ; ligase III ; NER ; nucleotide excision repair ; NHEJ ; non-homologous end joining ; nsSNPs ; non-synonymous single nucleotide polymorphisms ; PDB ; Protein Data Bank ; RI ; reliability index ; SAPs ; single amino acid polymorphisms ; SIFT ; sorting intolerant from tolerant ; subPSEC ; substitution position-specific evolutionary conservation ; SVM ; support vector machine ; XRCC1 ; X-ray repair cross-complementing group 1

刊名：Gene

出版年：2016

9.Next-generation sequencing for molecular diagnosis of autosomal recessive polycystic kidney disease

作者：Burhan M. Edrees^a ; ^g ; ¹ ; Mohammad Athar^a ; ^b ; ¹ ; ^{athar80@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Faisal A. Al-Allaf^a ; ^b ; ^c ; ¹ ; ^{faallaf@uqu.edu.sa" class="auth_mail" title="E-mail the corresponding author} ; Mohiuddin M. Taher^a ; ^b ; Wajahatullah Khan^d ; Abdellatif Bouazzaoui^a ; ^b ; Naffaa Al-Harbi^e ; Ramzia Safar^f ; Howaida Al-Edressi^f ; Khawala Alansary^g ; Abulkareem Anazi^g ; Naji Altayeb^g ; Muawia A. Ahmed^h ; Zainularifeen Abduljaleel^a ; ^b ; ¹ ; ^{zainulbio@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; ^{zaabduljaleel@uqu.edu.sa" class="auth_mail" title="E-mail the corresponding author}

关键词：ARPKD ; autosomal recessive polycystic kidney disease ; ADPKD ; Autosomal Dominant Polycystic Kidney Disease ; nsSNPs ; non-synonymous SNPs ; SIFT ; Sorting Intolerant From Tolerant ; PolyPhen2 ; Polymorphism Phenotyping ; NGS ; Next generation sequencing ; ISP ; Ion Sphere Particles ; BAM ; binary alignment mapping ; hg19 ; reference genome ; BWA ; Burrows-Wheeler Aligner ; SAM ; sequence alignment mapping ; PCR ; polymerase chain reaction ; SOAP ; Short Oligonucleotide Analysis Package ; GO ; Gene-Ontology

刊名：Gene

出版年：2016

10.In silico analysis of functional nsSNPs in human TRPC6 gene associated with steroid resistant nephrotic syndrome

作者：Bhoomi B. Joshi^a ; Prakash G. Koringa^b ; Kinnari N. Mistry^a ; ^{kinnarimistry@aribas.edu.in" class="auth_mail" title="E-mail the corresponding author} ; ^{kinnarinmistry@yahoo.com" class="auth_mail" title="E-mail the corresponding author} ; Amrut K. Patel^b ; Sishir Gang^c ; Chaitanya G. Joshi^b

关键词：TRPC6 ; Transient Receptor Potential cation Channel-6 ; dbSNP ; database of Single Nucleotide Polymorphism ; nsSNPs ; non-synonymous SNPs ; A.A. ; Amino Acid ; SIFT ; Sorting Intolerant From Tolerant ; PolyPhen ; Phenotype Polymorphism ; PANTHER ; Protein ANalysis THrough Evolutionary Relationships ; PROVEAN ; PROtein Variation Effect ANalyzer ; PYMOL ; Project Molecular and Cellular Biology ; QMEAN ; Qualitative Model Energy ANalysis ; MUSTER ; MUlti-Sources ThreadER

刊名：Gene

出版年：2015

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