作者：Arpaporn Yodmeeklin^a ; Pattara Khamrin^a ; Watchaporn Chuchaona^a ; Kattareeya Kumthip^a ; Aphisek Kongkaew^b ; Ratchaya Vachirachewin^c ; Shoko Okitsu^d ; ^e ; Hiroshi Ushijima^d ; ^e ; Niwat Maneekarn^a ; ^{niwat.m@cmu.ac.th}

关键词：Complete genome ; Group A rotavirus ; G9P[19] strains ; Interspecies transmission ; Whole-genome transmission

刊名：Infection, Genetics and Evolution

出版年：2017

作者：Dr James R Price ; PhD^a ; ^{jrprice@doctors.org.uk} ; Kevin Cole ; BSc^a ; ^b ; Andrew Bexley ; PhD^a ; ^b ; Vasiliki Kostiou ; MSc^c ; David W Eyre ; PhD^c ; Tanya Golubchik ; PhD^c ; Daniel J Wilson ; DPhil^c ; Prof Derrick W Crook ; MBBCh^c ; ^d ; ^e ; Prof A Sarah Walker ; PhD^c ; ^d ; Prof Timothy E A Peto ; FRCP^c ; ^d ; Prof Martin J Llewelyn ; PhD^a ; ^f ; ^* ; John Paul ; MD^a ; ^b ; ^* ; the Modernising Medical Microbiology informatics group^&dagger ;

刊名：The Lancet Infectious Diseases

出版年：2017

作者：Sarah Auburn^a ; Alyssa E. Barry^b ; ^c ; ^{barry@wehi.edu.au}

关键词：Malaria ; Plasmodium ; Population genetics ; Population genomics ; Transmission ; Diversity ; Control ; Elimination

刊名：International Journal for Parasitology

出版年：2017

作者：Shangxin Yang^a ; ¹ ; Peera Hemarajata^a ; ¹ ; Janet Hindler^a ; Kevin Ward^a ; Helty Adisetiyo^b ; Fan Li^b ; Grace M. Aldrovandi^b ; Nicole M. Green^c ; Dana Russell^d ; Zachary Rubin^d ; Romney M. Humphries^a

关键词：Whole genome sequencing ; WGS ; Carbapenem resistance ; CRE ; CRKP ; Nosocomial transmission ; PFGE ; Single nucleotide variant ; SNV ; Klebsiella pneumoniae ; Tn4401 ; Mutation ; NGS

刊名：Diagnostic Microbiology & Infectious Disease

出版年：2016

作者：Vlad Nikolayevskyy^a ; ^b ; ¹ ; ^{vlad.nikolayevskyy@phe.gov.uk" class="auth_mail" title="E-mail the corresponding author} ; Katharina Kranzer^a ; ^c ; ^d ; ¹ ; Stefan Niemann^d ; ^e ; Francis Drobniewski^a ; ^b

关键词：Tuberculosis ; Epidemiology ; Transmission ; Next generation sequencing

刊名：Tuberculosis

出版年：2016

作者：Dilrini De Silva ; PhD^a ; ^b ; ^c ; ^* ; Joanna Peters ; MBBS^d ; ^g ; ^* ; Kevin Cole ; BSc^e ; ^g ; Michelle J Cole ; DBMS^f ; Fiona Cresswell ; MBChB^e ; Gillian Dean ; MBChB^e ; Jayshree Dave ; MD^g ; Daniel Rh Thomas^h ; Kirsty Foster ; MScⁱ ; Alison Waldram ; PhD^j ; Daniel J Wilson ; DPhil^a ; ^b ; Xavier Didelot ; DPhil^k ; Yonatan H Grad ; MD^l ; ^m ; Prof Derrick W Crook ; FRCPath^a ; ^b ; ^c ; ^g ; Prof Tim E A Peto ; FRCP^a ; ^b ; ^c ; Prof A Sarah Walker ; PhD^a ; ^b ; ^c ; John Paul ; MD^b ; ^e ; ^g ; ^&dagger ; ; Dr David W Eyre ; DPhil^a ; ^b ; ^c ; ^&dagger ; ; ^{david.eyre@ndm.ox.ac.uk" class="auth_mail" title="E-mail the corresponding author}

刊名：The Lancet Infectious Diseases

出版年：2016

作者：Amber Arnold^a ; ^b ; ^{amber.arnold@doctors.org.uk" class="auth_mail" title="E-mail the corresponding author} ; Adam A. Witney^a ; ^{awitney@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Stephania Vergnano^a ; ^{stev@doctors.org.uk" class="auth_mail" title="E-mail the corresponding author} ; Anita Roche^c ; ^{anita.roche@phe.gov.uk" class="auth_mail" title="E-mail the corresponding author} ; Catherine A. Cosgrove^a ; ^b ; ^{ccosgrov@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Angela Houston^b ; ^{angela.houston@stgeorges.nhs.uk" class="auth_mail" title="E-mail the corresponding author} ; Katherine A. Gould^a ; ^{kgould@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Jason Hinds^a ; ^{jhinds@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Peter Riley^b ; ^{peter.riley@stgeorges.nhs.uk" class="auth_mail" title="E-mail the corresponding author} ; Derek Macallan^a ; ^b ; ^{macallan@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Philip D. Butcher^a ; ^{butercherp@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Tom S. Harrison^a ; ^b ; ^{tharriso@sgul.ac.uk" class="auth_mail" title="E-mail the corresponding author}

关键词：Tuberculosis ; Drug resistance ; Contact tracing ; Disease outbreaks ; Pathology ; molecular

刊名：Journal of Infection

出版年：2016

作者：Patrick McGann^a ; ^{patrick.t.mcgann4.ctr@mail.mil" class="auth_mail" title="E-mail the corresponding author} ; ^{mcgann.patrick@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Jessica L. Bunin^b ; Erik Snesrud^a ; Seema Singh^c ; Rosslyn Maybank^a ; Ana C. Ong^a ; Yoon I. Kwak^a ; Scott Seronello^c ; Robert J. Clifford^a ; Mary Hinkle^a ; Stephen Yamada^d ; Jason Barnhill^c ; Emil Lesho^a

关键词：Whole genome sequencing ; Enterococcus faecium ; Turnaround time

刊名：Diagnostic Microbiology & Infectious Disease

出版年：2016

作者：G. Kpeli¹ ; ² ; ³ ; I. Darko Otchere¹ ; A. Lamelas³ ; ⁶ ; A. Buultjens⁴ ; D. Bulach⁴ ; ⁵ ; S.L. Baines⁴ ; T. Seemann⁴ ; ⁵ ; S. Giulieri⁴ ; Z. Nakobu¹ ; S.Y. Aboagye¹ ; E. Owusu-Mireku¹ ; G. Pluschke² ; ³ ; T.P. Stinear⁴ ; D. Yeboah-Manu¹ ; ^{dyeboah-manu@noguchi.ug.edu.gh" class="auth_mail" title="E-mail the corresponding author}

关键词：Buruli ulcer ; health care-associated ; infection ; spa typing ; Staphylococcus aureus ; whole genome sequencing

刊名：New Microbes and New Infections

出版年：2016

作者：C. Sharma¹ ; N. Kumar² ; R. Pandey³ ; J.F. Meis⁴ ; ⁵ ; A. Chowdhary¹ ; ^{dranuradha@hotmail.com" class="auth_mail" title="E-mail the corresponding author}

关键词：Candida auris ; India ; multidrug resistant ; outbreak ; whole genome sequencing

刊名：New Microbes and New Infections

出版年：2016