作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Leif Andersson (1) (2)
Alan L Archibald (3)
Cynthia D Bottema (4)
Rudiger Brauning (5)
Shane C Burgess (6)
Dave W Burt (3)
Eduardo Casas (7)
Hans H Cheng (8)
Laura Clarke (9)
Christine Couldrey (10)
Brian P Dalrymple (11)
Christine G Elsik (12)
Sylvain Foissac (13)
Elisabetta Giuffra (14)
Martien A Groenen (15)
Ben J Hayes (16) (17) (18)
LuSheng S Huang (19)
Hassan Khatib (20)
James W Kijas (11)
Heebal Kim (21)
Joan K Lunney (22)
Fiona M McCarthy (23)
John C McEwan (24)
Stephen Moore (25)
Bindu Nanduri (26)
Cedric Notredame (27)
Yniv Palti (28)
Graham S Plastow (29)
James M Reecy (30)
Gary A Rohrer (31)
Elena Sarropoulou (32)
Carl J Schmidt (33)
Jeffrey Silverstein (34)
Ross L Tellam (35)
Michele Tixier-Boichard (14)
Gwenola Tosser-Klopp (13)
Christopher K Tuggle (30)
Johanna Vilkki (36)
Stephen N White (37) (38)
Shuhong Zhao (39)
Huaijun Zhou (40)
The FAANG Consortium

1. Science for Life Laboratory Uppsala ; Department of Medical Biochemistry and Microbiology ; Uppsala University ; Uppsala ; SE 751 23 ; Sweden
2. Department of Animal Breeding and Genetics ; Swedish University of Agricultural Sciences ; Uppsala ; SE-750 07 ; Sweden
3. The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Edinburgh ; EH25 9RG ; UK
4. School of Animal and Veterinary Sciences ; The University of Adelaide ; Roseworthy ; SA ; 5371 ; Australia
5. Invermay Agricultural Centre ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
6. College of Agriculture and Life Sciences ; University of Arizona ; Tucson ; AZ ; 85719 ; USA
7. National Animal Disease Center ; United States Department of Agriculture ; Agricultural Research Service ; Ames ; IA ; 50010 ; USA
8. Avian Disease and Oncology Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; East Lansing ; MI ; 48823 ; USA
9. European Molecular Biology Laboratory European Bioinformatics Institute ; Hinxton ; Cambridge ; CB10 1SD ; UK
10. Livestock Improvement Corporation ; Hamilton ; 3284 ; New Zealand
11. Agriculture Flagship ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Brisbane ; Australia
12. Division of Animal Sciences ; University of Missouri ; Columbia ; MO ; 65211 ; USA
13. UMR1388 G茅n茅tique ; Physiologie et Syst猫mes d鈥橢levage (GenPhySE) ; French National Institute for Agricultural Research (INRA) ; F-31326 ; Castanet-Tolosan ; France
14. UMR1313 G茅n茅tique Animale et Biologie Int茅grative (GABI) ; French National Institute for Agricultural Research (INRA) ; F-78352 ; Jouy-en-Josas ; France
15. Animal Breeding and Genomics Centre ; Wageningen University ; 6708聽PB ; Wageningen ; The Netherlands
16. Biosciences Research Division ; Department of Environment and Primary Industries Victoria ; Bundoora ; 3083 ; Australia
17. Dairy Futures Cooperative Research Centre ; Bundoora ; 3083 ; VIC ; Australia
18. La Trobe University ; Bundoora ; 3086 ; VIC ; Australia
19. Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China ; Jiangxi Agricultural University ; Jiangxi ; 330029 ; People鈥檚 Republic of China
20. Department of Animal Sciences ; University of Wisconsin-Madison ; Madison ; WI ; 53706 ; USA
21. Department of Agricultural Biotechnology ; Seoul National University ; Seoul ; Republic of Korea
22. Animal Parasitic Diseases Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; Beltsville ; MD ; 20705 ; USA
23. School of Animal and Comparative Biomedical Sciences ; University of Arizona ; Tucson ; AZ ; 85721 ; USA
24. Animal Productivity Group ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
25. Centre for Animal Science ; Queensland Alliance for Agriculture & Food Innovation ; University of Queensland ; St Lucia ; QLD ; 4067 ; Australia
26. Department of Basic Sciences ; College of Veterinary Medicine and Institute for Genomics ; Biocomputing and Biotechnology ; Mississippi State University ; Mississippi ; MS ; 39762 ; USA
27. Comparative Bioinformatics ; Centre for Genomic Regulation (CRG) ; Dr. Aiguader 88 ; 08003 ; Barcelona ; Spain
28. National Center for Cool and Cold Water Aquaculture ; United States Department of Agriculture ; Agricultural Research Service ; Kearneysville ; WV ; 25430 ; USA
29. Livestock Gentec Centre ; Department of Agricultural ; Food and Nutritional Science ; University of Alberta ; Edmonton ; Alberta ; T6G 2C8 ; Canada
30. Department of Animal Science ; Iowa State University ; Ames ; IA ; 50011 ; USA
31. US Meat Animal Research Center ; United States Department of Agriculture ; Agricultural Research Service ; Clay Center ; NE ; 68933 ; USA
32. Institute of Marine Biology ; Biotechnology and Aquaculture ; Hellenic Centre for Marine Research ; 71003 ; Heraklion ; Greece
33. Department of Animal and Food Sciences ; University of Delaware ; Newark ; DE ; 19716 ; USA
34. Animal Production and Protection ; United States Department of Agriculture ; Agricultural Research Service Aquaculture ; Beltsville ; MD ; 20705 ; USA
35. CSIRO Agriculture ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Australia
36. Green Technology ; Natural Resources Institute Finland ; 31600 ; Jokioinen ; Finland
37. Animal Disease Research Unit ; United States Department of Agriculture ; Agricultural Research Service ; Pullman ; WA ; 99164-6630 ; USA
38. Department of Veterinary Microbiology and Pathology ; Washington State University ; Pullman ; WA ; 99164-7040 ; USA
39. Key Laboratory of Agricultural Animal Genetics ; Breeding and Reproduction of Ministry of Education of China ; Huazhong Agricultural University ; Wuhan ; Hubei ; 430070 ; People鈥檚 Republic of China
40. Department of Animal Science ; University of California ; Davis ; CA ; 95616 ; USA

刊名：Genome Biology

出版年：2015

作者：Kamran Akbarzadeh (1)
James F. Wallman (2)
Hana Sulakova (3)
Krzysztof Szpila (4)

1. Department of Medical Entomology and Vector Control ; School of Public Health ; Tehran University of Medical Sciences ; P.O. Box 14155/6446 ; Tehran ; Iran
2. School of Biological Sciences ; University of Wollongong ; Wollongong ; NSW ; 2522 ; Australia
3. Institute of Criminalistics Prague ; P.O. Box 62/KUP ; Strojnicka 27 ; CZ-170 89 ; Prague 7 ; Czech Republic
4. Chair of Ecology and Biogeography ; Faculty of Biology and Environmental Protection ; Nicolaus Copernicus University ; Lwowska 1 ; 87-100 ; Toru艅 ; Poland

关键词：Calliphoridae ; Species identification ; Middle East ; Forensic entomology

刊名：Parasitology Research

出版年：2015

作者：Katherine W Jordan (1)
Shichen Wang (1)
Yanni Lun (1) (2)
Laura-Jayne Gardiner (3)
Ron MacLachlan (4)
Pierre Hucl (4)
Krysta Wiebe (4)
Debbie Wong (5)
Kerrie L Forrest (5)
Andrew G Sharpe (6)
Christine HD Sidebottom (6)
Neil Hall (3)
Christopher Toomajian (1)
Timothy Close (7)
Jorge Dubcovsky (8) (9)
Alina Akhunova (1) (2)
Luther Talbert (10)
Urmil K Bansal (11)
Harbans S Bariana (11)
Matthew J Hayden (5)
Curtis Pozniak (4)
Jeffrey A Jeddeloh (12)
Anthony Hall (3)
Eduard Akhunov (1)
IWGS Consortium

1. Department Plant Pathology ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
2. Integrated Genomics Facility ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
3. Institute of Integrative Biology ; University of Liverpool ; Liverpool ; L69 7ZB ; UK
4. Department Plant Sciences ; University of Saskatchewan ; Saskatoon ; SK ; S7N 5A8 ; Canada
5. Department Environment and Primary Industries ; Bundoora ; VIC ; 3083 ; Australia
6. National Research Council Canada ; 110 Gymnasium Place ; Saskatoon ; SK ; S7N 0聽W9 ; Canada
7. Department Botany & Plant Sciences ; University of California ; Riverside ; CA ; 92521 ; USA
8. Department Plant Sciences ; University of California ; Davis ; CA ; 95616 ; USA
9. Howard Hughes Medical Institute ; Chevy Chase ; MD ; 20815 ; USA
10. Department Plant Sciences & Plant Pathology ; Montana State University ; Bozeman ; MT ; 59717 ; USA
11. Plant Breeding Institute-Cobbitty ; The University of Sydney ; PMB4011 ; Narellan ; NSW ; 2567 ; Australia
12. Roche NimbleGen ; Inc ; Madison ; WI ; 53719 ; USA

刊名：Genome Biology

出版年：2015

作者：Darleen C. Ngo (1) (2)
Katherine Ververis (1) (2)
Stephanie M. Tortorella (3) (4)
Tom C. Karagiannis (1) (2)

1. Epigenomic Medicine ; The Alfred Medical Research and Education Precinct ; Baker IDI Heart and Diabetes Institute ; 75 Commercial Road ; Melbourne ; VIC ; Australia
2. Department of Pathology ; The University of Melbourne ; Parkville ; VIC ; Australia
3. Melbourne School of Land and Environment ; Department of Agriculture and Food Systems ; The University of Melbourne ; Parkville ; VIC ; Australia
4. Department of Chemical and Biomolecular Engineering ; The University of Melbourne ; Parkville ; VIC ; Australia

关键词：Warburg effect ; Cancer metabolism ; Glucose metabolism ; Glycolysis ; Oncogene

刊名：Molecular Biology Reports

出版年：2015

作者：Hanh Ngo (1) (2)
Stephanie M. Tortorella (3) (4)
Katherine Ververis (1) (2)
Tom C. Karagiannis (1) (2)

1. Epigenomic Medicine ; Baker IDI Heart and Diabetes Institute ; The Alfred Medical Research and Education Precinct ; 75 Commercial Road ; Melbourne ; VIC ; Australia
2. Department of Pathology ; The University of Melbourne ; Parkville ; VIC ; Australia
3. Department of Agriculture and Food Systems ; Melbourne School of Land and Environment ; The University of Melbourne ; Parkville ; VIC ; Australia
4. Department of Chemical and Biomolecular Engineering ; The University of Melbourne ; Parkville ; VIC ; Australia

关键词：Warburg effect ; Cancer metabolism ; Glucose metabolism ; Glycolysis ; Metabolic therapy

刊名：Molecular Biology Reports

出版年：2015

作者：Rupert Courtnay (1) (2)
Darleen C. Ngo (1) (2)
Neha Malik (1) (2)
Katherine Ververis (1) (2)
Stephanie M. Tortorella (3) (4)
Tom C. Karagiannis (1) (2)

1. Epigenomic Medicine ; Baker IDI Heart and Diabetes Institute ; The Alfred Medical Research and Education Precinct ; 75 Commercial Road ; Melbourne ; VIC ; Australia
2. Department of Pathology ; The University of Melbourne ; Parkville ; VIC ; Australia
3. Department of Agriculture and Food Systems ; Melbourne School of Land and Environment ; The University of Melbourne ; Parkville ; VIC ; Australia
4. Department of Chemical and Biomolecular Engineering ; The University of Melbourne ; Parkville ; VIC ; Australia

关键词：Warburg effect ; Cancer metabolism ; Glucose metabolism ; Glycolysis ; HIF1 ; PI3K

刊名：Molecular Biology Reports

出版年：2015

作者：Deborah A Hall (1)
Rachael C Birch (2)
Mathieu Anheim (3) (4) (5)
Aia E J酶nch (6)
Elizabeth Pintado (7)
Joan A O鈥橩eefe (8)
Julian N Trollor (13) (2)
Glenn T Stebbins (1)
Randi J Hagerman (9)
Stanley Fahn (10)
Elizabeth Berry-Kravis (1) (11)
Maureen A Leehey (12)

1. Department of Neurological Sciences ; Rush University ; Chicago ; IL ; USA
2. Department of Developmental Disability Neuropsychiatry ; School of Psychiatry ; University of New South Wales ; Sydney ; Australia
3. D茅partement de Neurologie ; H么pitaux Universitaires de Strasbourg ; H么pital de Hautepierre ; Strasbourg ; Cedex ; 67098 ; France
4. Institut de G茅n茅tique et de Biologie Mol茅culaire et Cellulaire (IGBMC) ; INSERM-U964/CNRS-UMR7104/Universit茅 de Strasbourg ; Illkirch ; 67404 ; France
5. F茅d茅ration de M茅decine Translationnelle de Strasbourg (FMTS) ; Universit茅 de Strasbourg ; Strasbourg ; France
6. Department of clinical Genetics ; Kennedy Center ; Rigshospitalet ; Copenhagen University Hospital ; Copenhagen ; Denmark
7. Department of Medical Biochemistry and Molecular Biology ; University of Seville ; Sevilla ; Spain
8. Department of Anatomy & Cell Biology ; Rush University ; Chicago ; IL ; USA
13. Centre for Healthy Brain Ageing ; University of New South Wales ; Sydney ; Australia
9. Department of Pediatrics & M.I.N.D. Institute ; University of California at Davis Medical Center ; Sacramento ; CA ; USA
10. Department of Neurology ; Columbia University ; New York ; NY ; USA
11. Departments of Pediatrics and Biochemistry ; Rush University ; Chicago ; IL ; USA
12. Department of Neurology ; University of Colorado at Denver ; Denver ; CO ; USA

刊名：Journal of Neurodevelopmental Disorders

出版年：2015

作者：Alan G Baxter (1)
Philip D Hodgkin (2) (3)

1. Comparative Genomics Centre ; Molecular Sciences Bldg 21 ; James Cook University ; Townsville ; Queensland ; 4811 ; Australia
2. Immunolology Division ; The Walter and Eliza Hall Institute of Medical Research ; 1G Royal Parade ; Parkville ; Victoria ; 3052 ; Australia
3. Department of Medical Biology ; The University of Melbourne ; Parkville ; Victoria ; 3010 ; Australia

刊名：Genome Medicine

出版年：2015

作者：Sebastian Kurscheid (1) (16) (2) (3)
Pierre Bady (1) (2) (3) (4)
Davide Sciuscio (1) (2)
Ivana Samarzija (1) (2)
Tal Shay (5)
Irene Vassallo (1) (2)
Wim V Criekinge (6)
Roy T Daniel (1)
Martin J van den Bent (7)
Christine Marosi (8)
Michael Weller (10) (9)
Warren P Mason (11)
Eytan Domany (12)
Roger Stupp (1) (13)
Mauro Delorenzi (14) (15) (3)
Monika E Hegi (1) (2)

1. Neurosurgery ; Lausanne University Hospital ; Lausanne ; 1011 ; Switzerland
16. Present address ; The John Curtin School of Medical Research ; The Australian National University ; Canberra ; ACT 2601 ; Australia
2. Neuroscience Research Center ; Lausanne University Hospital ; Lausanne ; 1011 ; Switzerland
3. Bioinformatics Core Facility ; Swiss Institute for Bioinformatics ; Lausanne ; 1005 ; Switzerland
4. Department of Education and Research ; University of Lausanne ; Lausanne ; 1011 ; Switzerland
5. Ben-Gurion University of the Negev ; Beersheba ; Israel
6. Department of Mathematical Modelling ; Statistics and Bioinformatics ; Ghent University ; Ghent ; Belgium
7. Department of Neurology/Neurooncology ; Erasmus MC Cancer Center ; Rotterdam ; The Netherlands
8. Department of Medicine ; Medical University Vienna ; Vienna ; Austria
10. Department of Neurology ; University Hospital Zurich ; Zurich ; Switzerland
9. Department of Neurology ; University of T眉bingen ; T眉bingen ; Germany
11. Princess Margaret Hospital ; University of Toronto ; Toronto ; Canada
12. Department of Physics of Complex Systems ; Weizmann Institute of Science ; Rehovot ; Israel
13. Department of Oncology ; University Hospital Zurich ; Zurich ; 8091 ; Switzerland
14. Ludwig Center for Cancer Research ; University of Lausanne ; Lausanne ; 1011 ; Switzerland
15. Department of Oncology ; University of Lausanne ; Lausanne ; 1011 ; Switzerland

刊名：Genome Biology

出版年：2015