作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Song Wu (1) (2) (3) (4)
Jiahao Chen (5) (9)
Pei Dong (3)
Shiqiang Zhang (2)
Yingying He (6)
Liang Sun (2)
Jialou Zhu (5)
Yanbing Cheng (5)
Xianxin Li (6)
Aifa Tang (2)
Yi Huang (2)
Yaoting Gui (6)
Chunxiao Liu (7)
Guosheng Yang (8)
Fangjian Zhou (3)
Zhiming Cai (2) (4)
Rongfu Wang (1)

1. Institute of Immunology ; Zhongshan School of Medicine ; Sun Yat-sen University ; Guangzhou ; Guangdong ; 510060 ; China
2. Shenzhen Second People鈥檚 Hospital ; The First Affiliated Hospital of Shenzhen University ; Shenzhen ; Guangdong ; 518035 ; China
3. Department of Urology ; Sun Yat-Sen University Cancer Center ; Guangzhou ; Guangdong ; 510060 ; China
4. National-regional Key Technology Engineering Laboratory for Clinical Application of Cancer Genomics ; Shenzhen Key Laboratory of Genitourinary Tumor ; Shenzhen ; Guangdong ; 518036 ; China
5. BGI-Shenzhen ; Shenzhen ; Guangdong ; 518083 ; China
9. Department of Cell Biology ; Albert Einstein College of Medicine ; Bronx ; NY ; 10461 ; USA
6. Guangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics ; Institute of Urology ; Peking University Shenzhen Hospital ; Shenzhen PKU-HKUST Medical Center ; Shenzhen ; Guangdong ; 518036 ; China
7. Department of Urology ; Zhujiang Hospital ; Southern Medical University ; Guangzhou ; 510282 ; China
8. Department of Urology ; Guangzhou Second People鈥檚 Hospital ; Guangzhou ; Guangdong ; 510282 ; China

关键词：Upper tract urothelial carcinoma of renal pelvis ; Global gene expression profiling ; ALDH2 ; CCNE1 ; SMAD3 ; Prognosis

刊名：BMC Cancer

出版年：2014

作者：Shengbin Li (1)
Bo Li (2)
Cheng Cheng (1) (2) (4)
Zijun Xiong (2)
Qingbo Liu (1)
Jianghua Lai (1)
Hannah V Carey (5)
Qiong Zhang (2) (6)
Haibo Zheng (1)
Shuguang Wei (1)
Hongbo Zhang (1)
Liao Chang (1) (2)
Shiping Liu (2)
Shanxin Zhang (1)
Bing Yu (1)
Xiaofan Zeng (2)
Yong Hou (2)
Wenhui Nie (7)
Youmin Guo (1)
Teng Chen (1)
Jiuqiang Han (1)
Jian Wang (2) (8)
Jun Wang (10) (2) (9)
Chen Chen (11)
Jiankang Liu (1) (4)
Peter J Stambrook (12)
Ming Xu (13)
Guojie Zhang (2) (9)
M Thomas P Gilbert (14) (15)
Huanming Yang (16) (2) (6) (8)
Erich D Jarvis (17)
Jun Yu (1) (3)
Jianqun Yan (1)

1. Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710049 ; P. R. China
2. BGI-Shenzhen ; Shenzhen ; 518083 ; P. R. China
4. Center for Mitochondrial Biology and Medicine ; The Key Laboratory of Biomedical Information Engineering of Ministry of Education ; School of Life Science and Technology and Frontier Institute of Science and Technology ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710049 ; China
5. University of Wisconsin School of Veterinary Medicine ; Madison ; Wisconsin ; USA
6. BGI-Northwest ; BGI-Shenzhen ; Xi鈥檃n ; 710000 ; P. R. China
7. Kunming Institute of Zoology ; Chinese Academy of Sciences ; Kunming ; Yunnan ; P. R. China
8. James D. Watson Institute of Genome Science ; Hangzhou ; China
10. King Abdulaziz University ; Jeddah ; Saudi Arabia
9. Department of Biology ; University of Copenhagen ; Copenhagen ; Denmark
11. School of Biomedical Sciences ; University of Queensland ; Queensland ; Australia
12. University of Cincinnati College of Medicine ; Cincinnati ; Ohio ; USA
13. College of medicine ; University of Chicago ; Chicago ; USA
14. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴sterVoldgade 5-7 ; 1350 ; Copenhagen ; Denmark
15. Department of Environment and Agriculture ; Trace and Environmental DNA Laboratory ; Curtin University ; Perth ; Western Australia ; 6845 ; Australia
16. Prince Aljawhra Center of Excellence in Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; Saudi Arabia
17. Howard Hughes Medical Institute ; Duke University Medical Center ; Durham ; NC ; 27710 ; USA
3. CAS Key Laboratory of Genome Sciences and Information ; Beijing Institute of Genomics ; Chinese Academy of Sciences ; Beijing ; 100101 ; P.R. China

刊名：Genome Biology

出版年：2014

作者：Berta Almoguera (1)
Sijie He (2) (3)
Marta Corton (4) (5)
Patricia Fernandez-San Jose (4) (5)
Fiona Blanco-Kelly (4) (5)
Maria Isabel L贸pez-Molina (5) (6)
Blanca Garc铆a-Sandoval (5) (6)
Javier del Val (7)
Yiran Guo (1)
Lifeng Tian (1)
Xuanzhu Liu (3)
Liping Guan (3)
Rosa J Torres (8)
Juan G Puig (9)
Hakon Hakonarson (1)
Xun Xu (10) (3)
Brendan Keating (1)
Carmen Ayuso (4) (5)

1. Center for Applied Genomics ; The Children鈥檚 Hospital of Philadelphia ; Philadelphia ; PA ; 19104 ; USA
2. College of Life Sciences ; University of Chinese Academy of Sciences ; Beijing ; 100049 ; China
3. BGI-Shenzhen ; Shenzhen ; 518083 ; China
4. Department of Genetics and Genomics ; IIS-Fundaci贸n Jim茅nez D铆az University Hospital (IISFJD ; UAM) ; 28040 ; Madrid ; Spain
5. Center for Biomedical Network Research on Rare Diseases (CIBERER) ; ISCIII ; Madrid ; Spain
6. Department of Ophthalmology ; Fundaci贸n Jim茅nez D铆az ; 28040 ; Madrid ; Spain
7. Department of Neurology ; Fundaci贸n Jim茅nez D铆az ; 28040 ; Madrid ; Spain
8. Department of Biochemistry ; La Paz University Hospital IdiPaz ; Madrid ; 28046 ; Spain
9. Department of Internal Medicine ; Metabolic-Vascular Unit ; La Paz University Hospital IdiPaz ; Madrid ; 28046 ; Spain
10. The Guangdong Enterprise Key Laboratory of Human Disease Genomics ; Shenzhen ; China

关键词：PRPS1 ; Retinitis pigmentosa ; Non ; random X ; chromosome inactivation ; Phosphoribosyl pyrophosphate synthetase deficiency ; Neuropathy

刊名：Orphanet Journal of Rare Diseases

出版年：2014

作者：Chunfang Gao (7) (9)
Yun Wang (8)
Yue Shen (8)
Dong Yan (7)
Xi He (7)
Junbiao Dai (7)
Qingyu Wu (7)

7. MOE Key Laboratory of Bioinformatics ; School of Life Sciences ; Tsinghua University ; Beijing ; 100084 ; China
9. Department of Criminal Science and Technology ; People鈥檚 Public Security University of China ; Beijing ; 100038 ; China
8. BGI-Shenzhen ; Shenzhen ; 518083 ; China

关键词：Microalgae ; Chlorella protothecoides ; Genome sequence ; Proteomic ; Oil accumulation ; Hexose ; proton symporter ; Transcriptome ; Lipid

刊名：BMC Genomics

出版年：2014

作者：Jeffrey M Kidd (17) (18)
Thomas J Sharpton (19) (20)
Dean Bobo (21)
Paul J Norman (22)
Alicia R Martin (17)
Meredith L Carpenter (17)
Martin Sikora (17)
Christopher R Gignoux (23)
Neda Nemat-Gorgani (22)
Alexandra Adams (17)
Moraima Guadalupe (24)
Xiaosen Guo (25)
Qiang Feng (25)
Yingrui Li (25)
Xiao Liu (25)
Peter Parham (22)
Eileen G Hoal (26)
Marcus W Feldman (27)
Katherine S Pollard (19) (28)
Jeffrey D Wall (28)
Carlos D Bustamante (17)
Brenna M Henn (17) (21)

17. Department of Genetics ; Stanford University ; Stanford ; CA ; 94305 ; USA
18. Departments of Human Genetics ; and Computational Medicine and Bioinformatics ; University of Michigan ; Ann Arbor ; MI ; USA
19. The J. David Gladstone Institutes ; University of California ; San Francisco ; San Francisco ; CA ; 94158 ; USA
20. Departments of Microbiology ; and Statistics ; Oregon State University ; Corvallis ; OR ; 97331 ; USA
21. Department of Ecology and Evolution ; Stony Brook University ; Life Sciences Bldg ; Room 640 ; Stony Brook ; NY ; 11794 ; USA
22. Department of Structural Biology ; Stanford University ; Stanford ; CA ; 94305 ; USA
23. Program in Pharmaceutical Sciences and Pharmacogenomics ; University of California ; San Francisco ; CA ; 94143 ; USA
24. Agilent Technologies ; Genomics Division ; Cedar Creek ; TX ; 78612 ; USA
25. Translational Medicine ; BGI 鈥?Shenzhen ; Shenzhen ; China
26. Stellenbosch University ; Tygerberg ; South Africa
27. Department of Biological Sciences ; Stanford University ; Stanford ; CA ; 94305 ; USA
28. Institute for Human Genetics ; and the Departments of Epidemiology and Biostatistics ; University of California ; San Francisco ; San Francisco ; CA ; 94143 ; USA

关键词：Exomes ; KhoeSan ; Genetic diversity ; Metagenomics ; Microbiome

刊名：BMC Genomics

出版年：2014

作者：Zhenqiang Su (1) (2)
Hong Fang (1)
Huixiao Hong (1)
Leming Shi (3) (4) (5)
Wenqian Zhang (1)
Wenwei Zhang (6)
Yanyan Zhang (6)
Zirui Dong (6) (7)
Lee J Lancashire (2)
Marina Bessarabova (2)
Xi Yang (1)
Baitang Ning (1)
Binsheng Gong (1)
Joe Meehan (1)
Joshua Xu (1)
Weigong Ge (1)
Roger Perkins (1)
Matthias Fischer (8)
Weida Tong (1)

1. National Center for Toxicological Research ; US Food and Drug Administration ; 3900 NCTR Road ; Jefferson ; AR ; 72079 ; USA
2. Thomson Reuters ; IP & Science ; 22 Thomson Place ; Boston ; MA ; 02210 ; USA
3. State Key Laboratory of Genetic Engineering and MOE Key Laboratory of Contemporary Anthropology ; Schools of Life Sciences and Pharmacy ; Fudan University ; Shanghai ; 201203 ; China
4. Fudan-Zhangjiang Center for Clinical Genomics ; Shanghai ; 201203 ; China
5. Zhanjiang Center for Translational Medicine ; Shanghai ; 201203 ; China
6. BGI-Shenzhen ; Main Building ; Bei Shan Industrial Zone ; Yantian District ; Shenzhen ; Guangdong ; 518083 ; China
7. BGI-Guangzhou ; Guangzhou ; China
8. Department of Pediatric Oncology and Hematology and Center for Molecular Medicine (CMMC) ; University Children鈥檚 Hospital of Cologne ; Kerpener Strasse 62 ; D-50924 ; Cologne ; Germany

刊名：Genome Biology

出版年：2014