作者：Sara Green (1)
Melinda Fagan (2)
Johannes Jaeger (3) (4)

1. Centre for Science Studies ; Department of Physics and Astronomy ; Aarhus University ; Aarhus ; Denmark
2. Department of Philosophy ; University of Utah ; Salt Lake City ; UT ; 84112 ; USA
3. EMBL/CRG Research Unit in Systems Biology ; Centre de Regulaci贸 Gen貌mica (CRG) ; Barcelona ; Spain
4. Universitat Pompeu Fabra (UPF) ; Barcelona ; Spain

关键词：Covering laws ; Developmental biology ; Dynamical systems theory (DST) ; Evolutionary systems biology (ESB) ; Level of explanation ; Mechanism ; Stem cells

刊名：Biological Theory

出版年：2015

作者： Stefan Petkov ; Wei Wang ; Yi Lei

关键词：Natural selection ; Drift ; Fitness ; Explanatory unification

刊名：Biology & Philosophy

出版年：2016

作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Peter Martin Ferdinand Emmrich (1) (2)
Hannah Elizabeth Roberts (1) (3)
Vera Pancaldi (1) (4)

1. Department of Plant Sciences ; University of Cambridge ; CB2 3EA ; Cambridge ; UK
2. Current address ; John Innes Centre ; Norwich Research Park ; Norwich ; NR4 7UH ; UK
3. Current address ; The Nuffield Department of Clinical Medicine ; Oxford University ; Peter Medawar Building for Pathogen Research ; Oxford ; OX1 3SY ; UK
4. Current address ; Structural Biology and BioComputing Programme ; Spanish National Cancer Research Centre (CNIO) ; Calle Melchor Fern谩ndez Almagro ; 3 ; Madrid ; E-28029 ; Spain

关键词：Heterosis ; Gene regulatory network ; Boolean network ; Simulation ; Speciation ; Dominance ; Overdominance ; Epistasis

刊名：BMC Evolutionary Biology

出版年：2015

作者：Alison K S Wee (1) (2)
Koji Takayama (3)
Jasher L Chua (4)
Takeshi Asakawa (1)
Sankararamasubramanian H Meenakshisundaram (5)
Onrizal (6)
Bayu Adjie (7)
Erwin Riyanto Ardli (8)
Sarawood Sungkaew (9)
Norhaslinda Binti Malekal (10)
Nguyen Xuan Tung (11)
Severino G Salmo III (12)
Orlex Baylen Yllano (13)
M Nazre Saleh (14)
Khin Khin Soe (15)
Yoichi Tateishi (16)
Yasuyuki Watano (1)
Shigeyuki Baba (17) (18)
Edward L Webb (4)
Tadashi Kajita (1)

1. Department of Biology ; Graduate School of Science ; Chiba University ; 1-33 Yayoi-cho ; Inage-ku ; Chiba ; 263-8522 ; Japan
2. Present Address ; Center for Integrative Conservation ; Xishuangbanna Tropical Botanical Garden ; Chinese Academy of Sciences ; Menglun ; Mengla ; Yunnan ; 666303 ; China
3. The University Museum ; The University of Tokyo ; Hongo 7-3-1 ; Tokyo ; 113-0033 ; Japan
4. Department of Biological Sciences ; National University of Singapore ; Singapore ; 117543 ; Singapore
5. Biotechnology Programme ; M.S. Swaminathan Research Foundation ; Chennai ; India
6. Forestry Sciences Department ; Universitas Sumatera Utara ; Medan ; Indonesia
7. Bali Botanical Garden ; Indonesian Institute of Sciences ; Bali ; Indonesia
8. Faculty of Biology ; Jenderal Soedirman University ; Purwokerto ; Indonesia
9. Forest Biology Department ; Faculty of Forestry ; Kasetsart University ; Bangkok ; Thailand
10. Institute for Tropical Biology and Conservation ; Universiti Malaysia Kota Kinabalu ; Kota Kinabalu ; Malaysia
11. Mangrove Ecosystem Research Centre ; Hanoi National University of Education ; Hanoi ; Vietnam
12. Department of Environmental Science ; School of Science and Engineering ; Ateneo de Manila University ; Quezon City ; Philippines
13. Biology Department ; College of Science and Technology ; Adventist University of the Philippines ; Silang ; 4118 ; Cavite ; Philippines
14. Department of Forest Production ; Faculty of Forestry ; Universiti Putra Malaysia ; Serdang ; Malaysia
15. Department of Botany ; University of Yangon ; Yangon ; Myanmar
16. Faculty of Education ; University of the Ryukyus ; Senbaru ; Okinawa ; Japan
17. Tropical Biosphere Research Center ; University of the Ryukyus ; Iriomote ; Okinawa ; Japan
18. International Society for Mangrove Ecosystems (ISME) ; c/o Faculty of Agriculture ; University of the Ryukyus ; Senbaru ; Okinawa ; 903-0129 ; Japan

关键词：Biogeography ; Coastal plants ; Gene flow ; Genetic diversity ; Genetic structure ; Indo ; West Pacific ; Mangrove ; Microsatellite ; Nuclear DNA ; Population genetics

刊名：BMC Evolutionary Biology

出版年：2015

作者：Matthew L Aardema (1)
Friederike D von Loewenich (2)

1. Department of Ecology and Evolutionary Biology ; Princeton University ; Princeton ; NJ ; USA
2. Department of Medical Microbiology and Hygiene ; University of Mainz ; Medical Centre ; Mainz ; Germany

关键词：Anaplasma phagocytophilum ; Bacteria ; Zoonoses ; Host range ; Effective population size ; Demography ; Selection

刊名：BMC Evolutionary Biology

出版年：2015

作者：C. S. Willisch (1)
I. Biebach (1)
N. Marreros (2)
M.-P. Ryser-Degiorgis (2)
P. Neuhaus (3)

1. Institute of Evolutionary Biology and Environmental Studies ; University of Zurich ; Winterthurerstrasse 190 ; 8057 ; Zurich ; Switzerland
2. Centre for Fish and Wildlife Health ; Vetsuisse Faculty ; University of Bern ; L盲nggass-Strasse 122 ; 3001 ; Bern ; Switzerland
3. Department of Biological Sciences ; University of Calgary ; 2500 University Dr. NW ; Calgary ; AB ; T2N 1N4 ; Canada

关键词：Compensatory growth ; Life ; history ; Longevity ; Male fitness ; Ungulate

刊名：Evolutionary Biology

出版年：2015

作者：Marie JJ Huysman (1) (2) (3) (4)
Atsuko Tanaka (4) (5)
Chris Bowler (4)
Wim Vyverman (3)
Lieven De Veylder (1) (2)

1. Department of Plant Systems Biology ; Flanders Institute for Biotechnology (VIB) ; 9052 ; Ghent ; Belgium
2. Department of Plant Systems Biology ; VIB ; and Bioinformatics ; Ghent University ; 9052 ; Ghent ; Belgium
3. Protistology and Aquatic Ecology ; Department of Biology ; Ghent University ; 9000 ; Ghent ; Belgium
4. Environmental and Evolutionary Genomics Section ; Institut de Biologie de l鈥橢cole Normale Sup茅rieure ; Centre National de la Recherche Scientifique ; Unit茅 Mixte de Recherche 8186 ; Institut National de la Sant茅 et de la Recherche M茅dicale U1024 ; Ecole Normale Sup茅rieure ; 75230 ; Paris ; Cedex 05 ; France
5. Current address ; Muroran Marine Station ; Field Science Center for Northern Biosphere ; Hokkaido University ; Muroran ; Hokkaido ; 051-0013 ; Japan

关键词：Cyclin ; dependent kinase ; CDKA2 ; Cell cycle ; Cell division ; Cytokinesis ; Diatom ; Mitosis ; Phaeodactylum tricornutum

刊名：BMC Plant Biology

出版年：2015

作者：Urtzi Enriquez-Urzelai (1) (2)
Albert Montori (3)
Gustavo A. Llorente (3)
Antigoni Kaliontzopoulou (4) (5)

1. Departamento de Biolog铆a de Organismos y Sistemas ; Universidad de Oviedo ; Catedr谩tico Rodrigo Ur铆a s/n ; 33006 ; Oviedo ; Spain
2. Research Unit of Biodiversity (UO-CSIC-PA) ; Campus de Mieres ; Edificio de Investigaci贸n ; Gonzalo Guti茅rrez Quir贸s s/n ; 33600 ; Mieres ; Spain
3. Departament de Biologia Animal-IRBIO-. ; Facultat de Biologia ; Universitat de Barcelona ; Avda Diagonal 643 ; 08028 ; Barcelona ; Spain
4. CIBIO Research Centre in Biodiversity and Genetic Resources ; InBIO ; University of Porto ; Campus Agr谩rio de Vair茫o ; Rua Padre Armando Quintas ; 7 ; 4485-661 ; Vair茫o ; Vila do Conde ; Portugal
5. Department of Ecology ; Evolution ; and Organismal Biology ; Iowa State University ; Ames ; IA ; 50011 ; USA

关键词：Ecological diversification ; Phylogenetic comparative method ; Modes of displacement ; Allometry

刊名：Evolutionary Biology

出版年：2015

作者：Emilie A Hardouin (1) (2)
Annie Orth (3)
Meike Teschke (1)
Jamshid Darvish (4)
Diethard Tautz (1)
Fran莽ois Bonhomme (3)

1. Max Planck Institute of Evolutionary Biology ; Department of Evolutionary Genetics ; August-Thienemann-Str. 2 ; 24306 ; Pl枚n ; Germany
2. Department of Life and Environmental Sciences ; Faculty of Science and Technology ; Bournemouth University ; Christchurch House ; Talbot Campus ; Poole ; Dorset ; BH12 5BB ; UK
3. Institut des Sciences de l鈥橢volution ; CNRS ; IRD ; EPHE ; Universit茅 de Montpellier ; Pl. E. Bataillon ; 34095 ; Montpellier ; France
4. Rodentology Research group ; Ferdowsi University of Mashhad ; Mashhad ; Iran

关键词：House mouse ; Microsatellites ; Phylogeographic hotspot ; Iranian plateau

刊名：BMC Evolutionary Biology

出版年：2015