作者： Prashant K. Singh ; Patrick R. van den Berg ; Mark D. Long ; Angie Vreugdenhil…

关键词：VDR ; GWAS ; SNP ; Immune function ; ChIP ; seq ; NF ; κB ; Linkage disequilibrium ; Nuclear receptor superfamily ; Cistrome ; DR3 motif

刊名：BMC Genomics

出版年：2017

作者：Takanori Hasegawa (1)
Tomoya Mori (1)
Rui Yamaguchi (2)
Teppei Shimamura (3)
Satoru Miyano (2)
Seiya Imoto (2)
Tatsuya Akutsu (1)

1. Bioinformatics Center ; Institute for Chemical Research ; Kyoto University ; Gokasho ; Kyoto ; 611-0011 Uji ; Japan
2. Human Genome Center ; The Institute of Medical Science ; The University of Tokyo ; 4-6-1 Shirokanedai ; Tokyo ; 108-8639 Minato-ku ; Japan
3. Division of Systems Biology ; Nagoya University Graduate School of Medicine ; 65 Tsurumai-cho ; Nagoya ; 466-8550 Showa-ku ; Japan

关键词：Gene regulatory networks ; Time series analysis ; Systems biology ; Data assimilation ; Monte Carlo

刊名：BMC Systems Biology

出版年：2015

作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Khursheed Iqbal (1)
Diana A Tran (1) (2)
Arthur X Li (3)
Charles Warden (1)
Angela Y Bai (1) (4)
Purnima Singh (1)
Xiwei Wu (1)
Gerd P Pfeifer (5) (6)
Piroska E Szab贸 (1) (6)

1. Department of Molecular and Cellular Biology ; Beckman Research Institute ; City of Hope ; Duarte ; California ; 91010 ; USA
2. Irell and Manella Graduate School of Biological Sciences ; City of Hope ; Duarte ; California ; 91010 ; USA
3. Department of Information Science ; Beckman Research Institute ; City of Hope ; Duarte ; California ; 91010 ; USA
4. Eugene and Ruth Roberts Summer Academy ; City of Hope ; Duarte ; California ; 91010 ; USA
5. Department of Cancer Biology ; Beckman Research Institute ; City of Hope ; Duarte ; California ; 91010 ; USA
6. Center for Epigenetics ; Van Andel Research Institute ; Grand Rapids ; Michigan ; 49503 ; USA

关键词：endocrine disruptor ; germline epigenetic reprogramming ; DNA methylation ; vinclozolin ; bisphenol A ; DEHP ; transgenerational epigenetic inheritance ; fetal germ cell ; genomic imprinting

刊名：Genome Biology

出版年：2015

作者：Sean T. S. Wei (1)
Miguel-Angel Fernandez-Martinez (2)
Yuki Chan (1)
Joy D. Van Nostrand (3)
Asuncion de los Rios-Murillo (2)
Jill M. Y. Chiu (4)
Annapoorna Maitrayee Ganeshram (1)
S. Craig Cary (5)
Jizhong Zhou (3) (6) (7)
Stephen B. Pointing (1) (5)

1. Institute for Applied Ecology New Zealand ; School of Applied Sciences ; Auckland University of Technology ; Private Bag 92006 ; Auckland ; 1142 ; New Zealand
2. Centro de Ciencias Medioambientales ; C/Serrano 115 Duplicado ; 28006 ; Madrid ; Spain
3. Department of Microbiology and Plant Biology ; Institute for Environmental Genomics ; University of Oklahoma ; Norman ; OK ; 73019 ; USA
4. Department of Biology ; Hong Kong Baptist University ; Kowloon Tong ; Hong Kong ; China
5. International Centre for Terrestrial Antarctic Research ; University of Waikato ; Private Bag 3105 ; Hamilton ; 3240 ; New Zealand
6. Earth Sciences Division ; Lawrence Berkeley National Laboratory ; Berkeley ; CA ; 94720 ; USA
7. State Key Joint Laboratory of Environment Simulation and Pollution Control ; School of Environment ; Tsinghua University ; Beijing ; 100084 ; China

关键词：Antarctica ; Chasmoendolith ; Dry Valleys ; Geochip ; Stress response

刊名：Polar Biology

出版年：2015

作者：Jing Wang (1) (2)
Baoyuan Qu (3)
Shijuan Dou (4)
Liyun Li (4)
Dedong Yin (1)
Zhiqian Pang (1) (5)
Zhuangzhi Zhou (1)
Miaomiao Tian (1)
Guozhen Liu (4)
Qi Xie (1)
Dingzhong Tang (3)
Xuewei Chen (2)
Lihuang Zhu (1)

1. State Key Laboratory of Plant Genomics and National Center for Plant Gene Research ; Institute of Genetics and Developmental Biology ; Chinese Academy of Sciences ; Beijing ; 100101 ; China
2. Rice Research Institute ; Sichuan Agricultural University ; Chengdu ; Sichuan ; 611130 ; China
3. State Key Laboratory for Plant Cell and Chromosome Engineering ; Institute of Genetics and Developmental Biology ; Chinese Academy of Sciences ; Beijing ; 100101 ; China
4. College of Life Sciences ; Hebei Agricultural University ; Baoding ; Hebei ; 071001 ; China
5. CAS Key Laboratory of Genome Sciences and Information ; Beijing Institute of Genomics ; Chinese Academy of Sciences ; Beijing ; 100029 ; China

关键词：U ; box ; E3 ligase ; Protein interaction ; Blast resistance ; Cell death ; Rice

刊名：BMC Plant Biology

出版年：2015

作者： Radoslaw Kwapiszewski ; Sebastian D. Pawlak ; Karolina Adamkiewicz

刊名：Targeted Oncology

出版年：2016

作者：Felipe Fidalgo (1)
Tatiane Cristina Rodrigues (2)
Mabel Pinilla (1)
Amanda Gon莽alves Silva (2)
Maria do Socorro Maciel (3)
Carla Rosenberg (2)
Victor Piana de Andrade (4)
Dirce Maria Carraro (1)
Ana Cristina Victorino Krepischi (1) (2)

1. International Research Center ; AC Camargo Cancer Center ; S茫o Paulo ; Brazil
2. Department of Genetics and Evolutionary Biology ; Institute of Biosciences ; University of S茫o Paulo ; S茫o Paulo ; Brazil
3. Department of Breast Cancer ; AC Camargo Cancer Center ; S茫o Paulo ; Brazil
4. Department of Surgical and Investigative Pathology ; AC Camargo Cancer Center ; S茫o Paulo ; Brazil

关键词：Invasive ductal carcinomas of the breast ; Breast cancer ; DNA copy number aberrations ; CNA ; Lymphovascular invasion ; Histologic grade III ; Gene expression ; S100A8 ; MMP1 ; MED1 ; ADAMTS3 ; HSD17B12

刊名：Tumor Biology

出版年：2015

作者： David Zeevi ; Tal Korem ; Eran Segal

刊名：Genome Biology

出版年：2016

作者：Xin Wang (1) (2)
Adrian M. Dubuc (1) (2)
Vijay Ramaswamy (1) (2) (3)
Stephen Mack (1) (2)
Deena M. A. Gendoo (4)
Marc Remke (1) (2)
Xiaochong Wu (1)
Livia Garzia (1)
Betty Luu (1)
Florence Cavalli (1)
John Peacock (1) (2)
Borja L贸pez (1)
Patryk Skowron (1) (2)
David Zagzag (5)
David Lyden (6)
Caitlin Hoffman (1) (7)
Yoon-Jae Cho (8)
Charles Eberhart (9)
Tobey MacDonald (10)
Xiao-Nan Li (11)
Timothy Van Meter (12)
Paul A. Northcott (13)
Benjamin Haibe-Kains (14) (4)
Cynthia Hawkins (15)
James T. Rutka (7)
Eric Bouffet (3)
Stefan M. Pfister (13)
Andrey Korshunov (16)
Michael D. Taylor (1) (7)

1. Developmental and Stem Cell Biology Program ; The Hospital for Sick Children ; University of Toronto ; Toronto ; ON ; Canada
2. Department of Laboratory Medicine and Pathobiology ; University of Toronto ; Toronto ; ON ; Canada
3. Division of Haematology/Oncology ; Hospital for Sick Children ; Toronto ; ON ; Canada
4. Bioinformatics and Computational Genomics Laboratory ; Princess Margaret Cancer Centre ; University Health Network ; Toronto ; ON ; Canada
5. Departments of Pathology and Neurosurgery ; NYU Langone Medical Center ; New York ; NY ; USA
6. Departments of Pediatrics ; Cell and Developmental Biology ; Weill Medical College of Cornell University ; New York ; NY ; USA
7. Division of Neurosurgery ; Hospital for Sick Children ; 555 University Ave ; Ste 1503 ; Toronto ; ON ; M5C 1X8 ; Canada
8. Department of Neurology and Neurological Sciences ; Stanford University School of Medicine ; Stanford ; CA ; USA
9. Departments of Pathology ; Ophthalmology and Oncology ; John Hopkins University School of Medicine ; Baltimore ; MD ; USA
10. Pediatric Neuro-Oncology Program ; Emory University School of Medicine ; Atlanta ; GA ; USA
11. Department of Pediatrics ; Brain Tumor Program ; Children鈥檚 Cancer Center ; Baylor College of Medicine ; Houston ; TX ; USA
12. Department of Pediatrics ; Virginia Commonwealth University School of Medicine ; Richmond ; VA ; USA
13. Division of Pediatric Neurooncology ; Department of Pediatric Hematology and Oncology ; German Cancer Consortium (DKTK) ; German Cancer Research Center (DKFZ) ; Heidelberg University Hospital ; Heidelberg ; Germany
14. Department of Medical Biophysics ; University of Toronto ; Toronto ; ON ; Canada
15. Department of Pathology ; Hospital for Sick Children ; Toronto ; ON ; Canada
16. Clinical Cooperation Unit Neuropathology ; German Cancer Research Center (DKFZ) ; Heidelberg ; Germany

关键词：Medulloblastoma ; Metastasis ; Molecular subgroups ; Integrative genomics ; Gene expression ; DNA methylation

刊名：Acta Neuropathologica

出版年：2015