作者：Toshihiro Hanawa (17)
Yuetsu Kodama (18)
Taisuke Boku (18)
Hideharu Amano (19)
Hitoshi Murai (20)
Masayuki Umemura (18)
Mitsuhisa Sato (18)

17. Information Technology Center ; The University of Tokyo ; Kashiwa ; Japan
18. Center for Computational Sciences ; University of Tsukuba ; Tsukuba ; Japan
19. Department of Information and Computer Science ; Keio University ; Yokohama ; Japan
20. RIKEN Advanced Institute for Computational Science ; Kobe ; Japan

关键词：Accelerator computing ; Interconnection network ; PCI express ; Remote DMA ; GPU direct

刊名：Lecture Notes in Computer Science

出版年：2015

作者：Josep Basha Gutierrez (20)
Martin Frith (21)
Kenta Nakai (22)

20. Department of Medical Bioinformatics ; Graduate School of Frontier Sciences ; The University of Tokyo ; 5-1-5 Kashiwanoha ; Kashiwa-shi ; Chiba-ken ; 277-8561 ; Japan
21. Computational Biology Research Center ; AIST Tokyo Waterfront Bio-IT Research Building ; 2-4-7 Aomi ; Koto-ku ; Tokyo ; 135-0064 ; Japan
22. Human Genome Center ; The Institute of Medical Science ; The University of Tokyo ; 4-6-1 Shirokane-dai ; Minato-ku ; Tokyo ; 108-8639 ; Japan

关键词：Motif finding ; Genetic Algorithm ; Transcription Factor Binding Site ; Statistical significance

刊名：Lecture Notes in Computer Science

出版年：2015

作者：Marcio Gameiro (1)
Yasuaki Hiraoka (2)
Shunsuke Izumi (3)
Miroslav Kramar (4)
Konstantin Mischaikow (5)
Vidit Nanda (6)

1. Instituto de Ci锚ncias Matem谩ticas e de Computa莽茫o ; Universidade de S茫o Paulo ; Caixa Postal 668 ; S茫o Carlos ; SP ; 13560-970 ; Brazil
2. Institute of Mathematics for Industry ; Kyushu University ; 744 ; Motooka ; Nishi-ku ; Fukuoka ; 819-0395 ; Japan
3. Department of Mathematical and Life Sciences ; Hiroshima University ; 1-3-1 ; Kagamiyama ; Higashi-Hiroshima ; 739-8526 ; Japan
4. Department of Mathematics ; Hill Center-Busch Campus Rutgers ; The State University of New Jersey ; 110 Frelinghusen Rd ; Piscataway ; NJ ; 08854-8019 ; USA
5. Department of Mathematics and BioMaPS ; Hill Center-Busch Campus Rutgers ; The State University of New Jersey ; 110 Frelinghusen Rd ; Piscataway ; NJ ; 08854-8019 ; USA
6. Department of Mathematics ; The University of Pennsylvania ; DRL ; 209 South 33rd Street ; Philadelphia ; PA ; 19104 ; USA

关键词：Protein compressibility ; Computational topology ; Persistence diagram ; Stability ; 55N99

刊名：Japan Journal of Industrial and Applied Mathematics

出版年：2015

作者：Satoru Okuda (1)
Yasuhiro Inoue (2)
Mototsugu Eiraku (3)
Taiji Adachi (2)
Yoshiki Sasai (1)

1. Organogenesis and Neurogenesis Group ; Center for Developmental Biology ; RIKEN ; 2-2-3 Minatojima-Minamimachi ; Chuo-ku ; Kobe ; Hyogo ; 650-0047 ; Japan
2. Department of Biomechanics ; Institute for Frontier Medical Sciences ; Kyoto University ; Kyoto ; Japan
3. Four-Dimensional Tissue Analysis Unit ; Center for Developmental Biology ; RIKEN ; Kobe ; Japan

关键词：Multicellular morphogenesis ; Dynamic deformation process ; Viscous property ; Vertex dynamics model ; Computational biomechanics ; Developmental biomechanics

刊名：Biomechanics and Modeling in Mechanobiology

出版年：2015

作者：Chao-Li Huang (1)
Pei-Hua Pu (1)
Hao-Jen Huang (1)
Huang-Mo Sung (1)
Hung-Jiun Liaw (1)
Yi-Min Chen (2)
Chien-Ming Chen (3)
Ming-Ban Huang (1)
Naoki Osada (4)
Takashi Gojobori (1) (4) (5)
Tun-Wen Pai (3)
Yu-Tin Chen (1)
Chi-Chuan Hwang (6)
Tzen-Yuh Chiang (1)

1. Department of Life Sciences ; National Cheng Kung University ; Tainan ; 701 ; Taiwan
2. Institute of Biotechnology ; National Cheng Kung University ; Tainan ; 701 ; Taiwan
3. Department of Computer Science and Engineering ; National Taiwan Ocean University ; Keelung ; 202 ; Taiwan
4. National Institute of Genetics ; Mishima ; Shizuoka ; 411-8540 ; Yata ; Japan
5. Computational Bioscience Research Center ; Biological and Environmental Sciences and Engineering Division ; King Abdullah University of Science and Technology ; Thuwal ; 23955-6900 ; Kingdom of Saudi Arabia
6. Department of Engineering Science and Supercomputing Research Center ; National Cheng Kung University ; Tainan ; 701 ; Taiwan

关键词：Xanthomonas ; Adaptive diversification ; Host shift ; Parapatric speciation ; Homologous recombination ; Comparative genomics

刊名：BMC Genomics

出版年：2015

作者：Yu-Cheng T Yang (1)
Chao Di (1)
Boqin Hu (1)
Meifeng Zhou (1)
Yifang Liu (1)
Nanxi Song (1)
Yang Li (1)
Jumpei Umetsu (1) (2)
Zhi John Lu (1)

1. MOE Key Laboratory of Bioinformatics ; Center for Synthetic and Systems Biology and Center for Plant Biology ; School of Life Sciences ; Tsinghua University ; Beijing ; 100084 ; China
2. Department of Biological Information ; Tokyo Institute of Technology ; Tokyo ; 152-8850 ; Japan

关键词：CLIP ; seq ; RNA ; binding protein ; RNA ; Regulatory networks ; Data integration

刊名：BMC Genomics

出版年：2015

作者：Alan Filipski (24)
Koichiro Tamura (25)
Paul Billing-Ross (26)
Oscar Murillo (24)
Sudhir Kumar (24) (27) (28)

24. Institute for Genomics and Evolutionary Medicine ; Temple University ; Philadelphia ; PA ; 19122 ; USA
25. Department of Biological Sciences ; Tokyo Metropolitan University ; Tokyo ; Japan
26. Department of Molecular Biology and Genetics ; College of Liberal Arts and Sciences ; Cornell University ; Ithaca ; NY ; 14853-5905 ; USA
27. Department of Biology ; Temple University ; Philadelphia ; PA ; 19122 ; USA
28. Center for Genomic Medicine and Research ; King Abdulaziz University ; Jeddah ; Saudi Arabia

刊名：BMC Genomics

出版年：2015

作者：Shotaro Hirase (8)
Haruka Ozaki (9)
Wataru Iwasaki (10) (8) (9)

8. Center for Earth Surface System Dynamics ; Atmosphere and Ocean Research Institute ; the University of Tokyo ; Kashiwa ; Chiba ; 277-8564 ; Japan
9. Department of Computational Biology ; Graduate School of Frontier Sciences ; the University of Tokyo ; Kashiwa ; Chiba ; 277-8568 ; Japan
10. Department of Biological Sciences ; Graduate School of Science ; the University of Tokyo ; Bunkyo-ku ; Tokyo ; 113-0032 ; Japan

关键词：Gene copy number variations ; Parallel evolution ; Positive selection ; Three ; spined stickleback

刊名：BMC Genomics

出版年：2014

作者： Klaus Mainzer

关键词：complex systems ; nonlinear dynamics ; self ; organization ; computational dynamics ; sociodynamics ; econophysics ; A12 ; A13

刊名：Evolutionary and Institutional Economics Review

出版年：2009

作者：Mitsuhisa Sato

刊名：Lecture Notes in Computer Science

出版年：2007