作者：Federico Comoglio (1)
Cem Sievers (1) (2) (3)
Renato Paro (1) (4)

1. Department of Biosystems Science and Engineering ; Swiss Federal Institute of Technology Zurich ; Mattenstrasse 26 ; Basel ; 4058 ; Switzerland
2. Department of Pathology and Center for Cancer Research ; Massachusetts General Hospital and Harvard Medical School ; Boston ; USA
3. Broad Institute of MIT and Harvard ; Cambridge ; USA
4. Faculty of Science ; University of Basel ; Klingelbergstrasse 504056 ; Basel ; Switzerland

关键词：PAR ; CLIP ; RNA ; RNA binding proteins ; Bayesian statistics

刊名：BMC Bioinformatics

出版年：2015

作者：Sebastian Kurscheid (1) (16) (2) (3)
Pierre Bady (1) (2) (3) (4)
Davide Sciuscio (1) (2)
Ivana Samarzija (1) (2)
Tal Shay (5)
Irene Vassallo (1) (2)
Wim V Criekinge (6)
Roy T Daniel (1)
Martin J van den Bent (7)
Christine Marosi (8)
Michael Weller (10) (9)
Warren P Mason (11)
Eytan Domany (12)
Roger Stupp (1) (13)
Mauro Delorenzi (14) (15) (3)
Monika E Hegi (1) (2)

1. Neurosurgery ; Lausanne University Hospital ; Lausanne ; 1011 ; Switzerland
16. Present address ; The John Curtin School of Medical Research ; The Australian National University ; Canberra ; ACT 2601 ; Australia
2. Neuroscience Research Center ; Lausanne University Hospital ; Lausanne ; 1011 ; Switzerland
3. Bioinformatics Core Facility ; Swiss Institute for Bioinformatics ; Lausanne ; 1005 ; Switzerland
4. Department of Education and Research ; University of Lausanne ; Lausanne ; 1011 ; Switzerland
5. Ben-Gurion University of the Negev ; Beersheba ; Israel
6. Department of Mathematical Modelling ; Statistics and Bioinformatics ; Ghent University ; Ghent ; Belgium
7. Department of Neurology/Neurooncology ; Erasmus MC Cancer Center ; Rotterdam ; The Netherlands
8. Department of Medicine ; Medical University Vienna ; Vienna ; Austria
10. Department of Neurology ; University Hospital Zurich ; Zurich ; Switzerland
9. Department of Neurology ; University of T眉bingen ; T眉bingen ; Germany
11. Princess Margaret Hospital ; University of Toronto ; Toronto ; Canada
12. Department of Physics of Complex Systems ; Weizmann Institute of Science ; Rehovot ; Israel
13. Department of Oncology ; University Hospital Zurich ; Zurich ; 8091 ; Switzerland
14. Ludwig Center for Cancer Research ; University of Lausanne ; Lausanne ; 1011 ; Switzerland
15. Department of Oncology ; University of Lausanne ; Lausanne ; 1011 ; Switzerland

刊名：Genome Biology

出版年：2015

作者：Patrick Favre (1) (3) (5)
Laure Bapaume (1)
Eligio Bossolini (1) (6)
Mauro Delorenzi (2) (4) (5)
Laurent Falquet (1) (3)
Didier Reinhardt (1)

1. Department of Biology ; University of Fribourg ; Fribourg ; Switzerland
3. Swiss Institute of Bioinformatics ; Fribourg ; Switzerland
5. SIB Swiss Institute of Bioinformatics ; Lausanne ; Switzerland
6. Current address ; Crop Genetics ; Bayer CropScience NV ; Ghent ; Belgium
2. Ludwig Center for Cancer Research ; University of Lausanne ; Lausanne ; Switzerland
4. Oncology Department ; University of Lausanne ; Lausanne ; Switzerland

关键词：Arbuscular mycorrhiza ; Symbiosis ; Symbiosis signaling ; Common SYM gene ; Conservation ; Gene clustering ; Proteome analysis ; Bioinformatics

刊名：BMC Plant Biology

出版年：2014

作者：Ke Yuan (1)
Thomas Sakoparnig (2) (3) (4)
Florian Markowetz (1)
Niko Beerenwinkel (2) (3)

1. University of Cambridge ; Cancer Research UK Cambridge Institute ; Cambridge ; UK
2. Department of Biosystems Science and Engineering ; ETH Zurich ; Basel ; Switzerland
3. SIB Swiss Institute of Bioinformatics ; Basel ; Switzerland
4. Current address ; Biozentrum ; University of Basel ; Basel ; Switzerland

刊名：Genome Biology

出版年：2015

作者：Tamara Vasylenko (8)
Yi-Fan Liou (8)
Hong-An Chen (8)
Phasit Charoenkwan (8)
Hui-Ling Huang (8) (9)
Shinn-Ying Ho (8) (9)

8. Institute of Bioinformatics and Systems Biology ; National Chiao Tung University ; Hsinchu ; Taiwan
9. Department of Biological Science and Technology ; National Chiao Tung University ; Hsinchu ; Taiwan

刊名：BMC Bioinformatics

出版年：2015

作者：Mark Masin (1)
Jessica Vazquez (1)
Simona Rossi (2)
Svenja Groeneveld (1)
Natasha Samson (1)
Petra C Schwalie (3)
Bart Deplancke (3)
Laura E Frawley (4)
J茅r么me Gouttenoire (5)
Darius Moradpour (5)
Trudy G Oliver (6)
Etienne Meylan (1)

1. Swiss Institute for Experimental Cancer Research ; School of Life Sciences ; Ecole Polytechnique F茅d茅rale de Lausanne ; Lausanne ; 1015 ; Switzerland
2. Bioinformatics Core Facility ; Swiss Institute of Bioinformatics ; Lausanne ; 1015 ; Switzerland
3. Institute of Bioengineering ; School of Life Sciences ; Ecole Polytechnique F茅d茅rale de Lausanne ; Lausanne ; 1015 ; Switzerland
4. Koch Institute for Integrative Cancer Research ; Massachusetts Institute of Technology ; Cambridge ; MA ; 02139 ; USA
5. Division of Gastroenterology and Hepatology ; Centre Hospitalier Universitaire Vaudois ; University of Lausanne ; Lausanne ; 1011 ; Switzerland
6. Huntsman Cancer Institute ; University of Utah ; Salt Lake City ; UT ; 84112 ; USA

关键词：Epithelial ; mesenchymal transition ; Glucose transporter ; GLUT3 ; Non ; small cell lung cancer ; SLC2A3 ; ZEB1

刊名：Cancer & Metabolism

出版年：2014

作者：Nishanth Ulhas Nair (10) (6)
Yu Lin (7)
Ana Manasovska (6)
Jelena Antic (6)
Paulina Grnarova (6)
Avinash Das Sahu (8)
Philipp Bucher (10) (9)
Bernard ME Moret (10) (6)

10. Swiss Institute of Bioinformatics ; Lausanne ; Switzerland
6. School of Computer and Communication Sciences ; 脡cole Polytechnique F茅d茅rale de Lausanne (EPFL) ; EPFL IC IIF LCBB ; INJ 211 (Batiment INJ) ; Station 14 ; CH-1015 ; Lausanne ; Switzerland
7. Department of Computer Science and Engineering ; University of California ; San Diego ; San Diego ; USA
8. Department of Computer Science ; University of Maryland ; College Park ; Maryland ; USA
9. School of Life Sciences ; 脡cole Polytechnique F茅d茅rale de Lausanne (EPFL) ; Lausanne ; Switzerland

关键词：Cell differentiation ; Development ; Cell ; type trees ; Epigenomics ; Histone modifications ; Phylogenetics ; Evolution of cell types

刊名：BMC Bioinformatics

出版年：2014

作者：Glenn Litsios (1) (2)
Nicolas Salamin (1) (2)

1. Department of Ecology and Evolution ; Biophore ; University of Lausanne ; 1015 ; Lausanne ; Switzerland
2. Swiss Institute of Bioinformatics ; G茅nopode ; Quartier Sorge ; 1015 ; Lausanne ; Switzerland

关键词：Syngameon ; Speciation ; Diversification ; Cytonuclear discordance ; Anemonefish

刊名：BMC Evolutionary Biology

出版年：2014

作者：James J. Davis (1)
Gary J. Olsen (1) (2)
Ross Overbeek (3) (4)
Veronika Vonstein (3)
Fangfang Xia (4)

关键词：Automatic annotation ; Protein clusters

刊名：3 Biotech

出版年：2014

作者：Hongyan Wu (1)
Toyofumi Fujiwara (2)
Yasunori Yamamoto (1)
Jerven Bolleman (3)
Atsuko Yamaguchi (1)

1. Database Center for Life Science ; Research Organization of Information and Systems ; 178-4-4 Wakashiba ; Kashiwa ; Chiba ; 277-0871 ; Japan
2. INTEC Inc ; 1-3-3 Shinsuna ; Koto-ku ; Tokyo ; 136-8637 ; Japan
3. Swiss-Prot group ; SIB Swiss Institute of Bioinformatics ; CMU ; 1 Michel Servet ; 1211 ; Geneva 4 ; Switzerland

刊名：Journal of Biomedical Semantics

出版年：2014