作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Leif Andersson (1) (2)
Alan L Archibald (3)
Cynthia D Bottema (4)
Rudiger Brauning (5)
Shane C Burgess (6)
Dave W Burt (3)
Eduardo Casas (7)
Hans H Cheng (8)
Laura Clarke (9)
Christine Couldrey (10)
Brian P Dalrymple (11)
Christine G Elsik (12)
Sylvain Foissac (13)
Elisabetta Giuffra (14)
Martien A Groenen (15)
Ben J Hayes (16) (17) (18)
LuSheng S Huang (19)
Hassan Khatib (20)
James W Kijas (11)
Heebal Kim (21)
Joan K Lunney (22)
Fiona M McCarthy (23)
John C McEwan (24)
Stephen Moore (25)
Bindu Nanduri (26)
Cedric Notredame (27)
Yniv Palti (28)
Graham S Plastow (29)
James M Reecy (30)
Gary A Rohrer (31)
Elena Sarropoulou (32)
Carl J Schmidt (33)
Jeffrey Silverstein (34)
Ross L Tellam (35)
Michele Tixier-Boichard (14)
Gwenola Tosser-Klopp (13)
Christopher K Tuggle (30)
Johanna Vilkki (36)
Stephen N White (37) (38)
Shuhong Zhao (39)
Huaijun Zhou (40)
The FAANG Consortium

1. Science for Life Laboratory Uppsala ; Department of Medical Biochemistry and Microbiology ; Uppsala University ; Uppsala ; SE 751 23 ; Sweden
2. Department of Animal Breeding and Genetics ; Swedish University of Agricultural Sciences ; Uppsala ; SE-750 07 ; Sweden
3. The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Edinburgh ; EH25 9RG ; UK
4. School of Animal and Veterinary Sciences ; The University of Adelaide ; Roseworthy ; SA ; 5371 ; Australia
5. Invermay Agricultural Centre ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
6. College of Agriculture and Life Sciences ; University of Arizona ; Tucson ; AZ ; 85719 ; USA
7. National Animal Disease Center ; United States Department of Agriculture ; Agricultural Research Service ; Ames ; IA ; 50010 ; USA
8. Avian Disease and Oncology Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; East Lansing ; MI ; 48823 ; USA
9. European Molecular Biology Laboratory European Bioinformatics Institute ; Hinxton ; Cambridge ; CB10 1SD ; UK
10. Livestock Improvement Corporation ; Hamilton ; 3284 ; New Zealand
11. Agriculture Flagship ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Brisbane ; Australia
12. Division of Animal Sciences ; University of Missouri ; Columbia ; MO ; 65211 ; USA
13. UMR1388 G茅n茅tique ; Physiologie et Syst猫mes d鈥橢levage (GenPhySE) ; French National Institute for Agricultural Research (INRA) ; F-31326 ; Castanet-Tolosan ; France
14. UMR1313 G茅n茅tique Animale et Biologie Int茅grative (GABI) ; French National Institute for Agricultural Research (INRA) ; F-78352 ; Jouy-en-Josas ; France
15. Animal Breeding and Genomics Centre ; Wageningen University ; 6708聽PB ; Wageningen ; The Netherlands
16. Biosciences Research Division ; Department of Environment and Primary Industries Victoria ; Bundoora ; 3083 ; Australia
17. Dairy Futures Cooperative Research Centre ; Bundoora ; 3083 ; VIC ; Australia
18. La Trobe University ; Bundoora ; 3086 ; VIC ; Australia
19. Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China ; Jiangxi Agricultural University ; Jiangxi ; 330029 ; People鈥檚 Republic of China
20. Department of Animal Sciences ; University of Wisconsin-Madison ; Madison ; WI ; 53706 ; USA
21. Department of Agricultural Biotechnology ; Seoul National University ; Seoul ; Republic of Korea
22. Animal Parasitic Diseases Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; Beltsville ; MD ; 20705 ; USA
23. School of Animal and Comparative Biomedical Sciences ; University of Arizona ; Tucson ; AZ ; 85721 ; USA
24. Animal Productivity Group ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
25. Centre for Animal Science ; Queensland Alliance for Agriculture & Food Innovation ; University of Queensland ; St Lucia ; QLD ; 4067 ; Australia
26. Department of Basic Sciences ; College of Veterinary Medicine and Institute for Genomics ; Biocomputing and Biotechnology ; Mississippi State University ; Mississippi ; MS ; 39762 ; USA
27. Comparative Bioinformatics ; Centre for Genomic Regulation (CRG) ; Dr. Aiguader 88 ; 08003 ; Barcelona ; Spain
28. National Center for Cool and Cold Water Aquaculture ; United States Department of Agriculture ; Agricultural Research Service ; Kearneysville ; WV ; 25430 ; USA
29. Livestock Gentec Centre ; Department of Agricultural ; Food and Nutritional Science ; University of Alberta ; Edmonton ; Alberta ; T6G 2C8 ; Canada
30. Department of Animal Science ; Iowa State University ; Ames ; IA ; 50011 ; USA
31. US Meat Animal Research Center ; United States Department of Agriculture ; Agricultural Research Service ; Clay Center ; NE ; 68933 ; USA
32. Institute of Marine Biology ; Biotechnology and Aquaculture ; Hellenic Centre for Marine Research ; 71003 ; Heraklion ; Greece
33. Department of Animal and Food Sciences ; University of Delaware ; Newark ; DE ; 19716 ; USA
34. Animal Production and Protection ; United States Department of Agriculture ; Agricultural Research Service Aquaculture ; Beltsville ; MD ; 20705 ; USA
35. CSIRO Agriculture ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Australia
36. Green Technology ; Natural Resources Institute Finland ; 31600 ; Jokioinen ; Finland
37. Animal Disease Research Unit ; United States Department of Agriculture ; Agricultural Research Service ; Pullman ; WA ; 99164-6630 ; USA
38. Department of Veterinary Microbiology and Pathology ; Washington State University ; Pullman ; WA ; 99164-7040 ; USA
39. Key Laboratory of Agricultural Animal Genetics ; Breeding and Reproduction of Ministry of Education of China ; Huazhong Agricultural University ; Wuhan ; Hubei ; 430070 ; People鈥檚 Republic of China
40. Department of Animal Science ; University of California ; Davis ; CA ; 95616 ; USA

刊名：Genome Biology

出版年：2015

作者：Santiago Uribe-Lewis (1)
Rory Stark (1)
Thomas Carroll (1)
Mark J Dunning (1)
Martin Bachman (1)
Yoko Ito (1)
Lovorka Stojic (1)
Silvia Halim (1)
Sarah L Vowler (1)
Andy G Lynch (1)
Benjamin Delatte (2)
Eric J de Bony (2)
Laurence Colin (2)
Matthieu Defrance (2)
Felix Krueger (3)
Ana-Luisa Silva (4)
Rogier ten Hoopen (4)
Ashraf EK Ibrahim (4)
Fran莽ois Fuks (2)
Adele Murrell (1) (5)

1. Cancer Research UK Cambridge Institute ; University of Cambridge ; Robinson Way ; Cambridge ; CB2 0RE ; UK
2. Laboratory of Cancer Epigenetics ; Universit茅 Libre de Bruxelles ; Faculty of Medicine ; Route de Lennik 808 ; 1070 ; Brussels ; Belgium
3. Bioinformatics Group ; The Babraham Institute ; Babraham Research Campus ; Cambridge ; CB22 3AT ; UK
4. Department of Pathology ; Addenbrooke鈥檚 Hospital ; Box 231 ; Level 3 ; Hills Road ; Cambridge ; CB2 0QQ ; UK
5. Department of Biology and Biochemistry ; Centre for Regenerative Medicine ; University of Bath ; Claverton Down ; Bath ; BA2 7AY ; UK

刊名：Genome Biology

出版年：2015

作者：Carolina Frankl-Vilches (1)
Heiner Kuhl (1) (2)
Martin Werber (2)
Sven Klages (2)
Martin Kerick (2)
Antje Bakker (1)
Edivaldo HC de Oliveira (3)
Christina Reusch (1)
Floriana Capuano (4)
Jakob Vowinckel (4)
Stefan Leitner (1)
Markus Ralser (4) (5)
Bernd Timmermann (2)
Manfred Gahr (1)

1. Department of Behavioral Neurobiology ; Max Planck Institute for Ornithology ; 82319 ; Seewiesen ; Germany
2. Max Planck Institute for Molecular Genetics ; Sequencing Core Facility ; 14195 ; Berlin ; Germany
3. Laborat贸rio de Cultura de Tecidos e Citogen茅tica ; SAMAM ; Instituto Evandro Chagas ; Ananindeua ; Par谩 ; and Faculdade de Ci锚ncias Naturais (ICEN) ; Universidade Federal do Par谩 ; Bel茅m ; 66075-110 ; Brazil
4. Department of Biochemistry and Cambridge Systems Biology Centre ; 80 Tennis Court Road ; Cambridge ; CB2 1GA ; UK
5. Division of Physiology and Metabolism ; MRC National Institute for Medical Research ; the Ridgeway ; Mill Hill ; London ; NW7 1AA ; UK

刊名：Genome Biology

出版年：2015

作者：Steve Michel (1)
Markus A Keller (2)
Mirjam MC Wamelink (4)
Markus Ralser (2) (3)

1. Max Planck Institute for Molecular Genetics ; Ihnestr 73 ; Berlin ; 14195 ; Germany
2. Department of Biochemistry and Cambridge Systems Biology Center ; University of Cambridge ; 80 ; Tennis ; Court Road ; Cambridge ; CB2 1GA ; UK
4. Metabolic Unit ; Department of Clinical Chemistry ; VU University Medical Centre Amsterdam ; Amsterdam ; The Netherlands
3. MRC National Institute for Medical Research ; The Ridgeway ; Mill Hill ; London ; UK

关键词：Chronological lifespan ; Pentose phosphate pathway ; Transaldolase ; NQM1 ; VHR1 ; Oxidative stress

刊名：BMC Genetics

出版年：2015

作者：Marta Madon-Simon (1) (3)
Michael Cowley (1) (4)
Alastair S Garfield (1) (5)
Kim Moorwood (1)
Steven R Bauer (2)
Andrew Ward (1)

1. Department of Biology & Biochemistry and Centre for Regenerative Medicine ; University of Bath ; Building 4 South ; Claverton Down ; Bath ; BA2 7AY ; UK
3. Present address ; Department of Cell Biology ; University of Geneva ; CH-1211 ; Geneva 4 ; Switzerland
4. Department of Biological Sciences and Center for Human Health and the Environment ; North Carolina State University ; Raleigh ; NC ; 27695 ; USA
5. Present address ; Centre for Integrative Physiology ; University of Edinburgh ; Edinburgh ; UK
2. Division of Cellular and Gene Therapies ; Cellular and Tissue Therapies Branch ; Food and Drug Administration ; Center for Biologics Evaluation and Research ; 10903 New Hampshire Avenue ; Silver Spring ; MD ; 20993-0002 ; USA

关键词：Adiposity ; Body proportions ; Genomic imprinting ; Glucose ; regulated metabolism ; Growth ; Mouse genetics

刊名：BMC Biology

出版年：2014

作者：Patricia Sebastian-Leon (1)
Enrique Vidal (1) (2) (3)
Pablo Minguez (1) (4)
Ana Conesa (1)
Sonia Tarazona (1)
Alicia Amadoz (1)
Carmen Armero (5)
Francisco Salavert (1) (2)
Antonio Vidal-Puig (6)
David Montaner (1)
Joaqu铆n Dopazo (1) (2) (7)

1. Department of Computational Genomics ; Centro de Investigaci贸n Pr铆ncipe Felipe (CIPF) ; Avda. Autopista del Saler ; 16 ; 46012 ; Valencia ; Spain
2. BIER ; CIBER de Enfermedades Raras (CIBERER) ; Valencia ; 46012 ; Spain
3. Present Address ; Cancer Epigenetics and Biology Program (PEBC) ; Bellvitge Biomedical Research Institute (IDIBELL) ; L鈥橦ospitalet de Llobregat ; Barcelona ; Spain
4. Present Address ; Structural and Computational Biology ; European Molecular Biology Laboratory ; Heidelberg ; 69117 ; Germany
5. Department of Statistics and Operations Research ; University of Valencia ; Valencia ; 46100 ; Spain
6. Institute of Metabolic Science - Metabolic Research Laboratories and Department of Clinical Biochemistry ; University of Cambridge ; Addenbrooke鈥檚 Hospital ; Cambridge ; CB2 0QQ ; UK
7. Functional Genomics Node ; (INB) at CIPF ; Valencia ; Spain

关键词：Signaling pathways ; Probabilistic model ; Disease mechanism ; Precision medicine ; Disease mechanism ; Cancer ; Fanconi anemia ; Obesity ; Stem cells

刊名：BMC Systems Biology

出版年：2014

作者：Hui-Zhen Fu (1)
Yuh-Shan Ho (1) (2)

1. Department of Environmental Sciences ; Peking University ; Beijing ; 100871 ; People鈥檚 Republic of China
2. Trend Research Centre ; Asia University ; Taichung County ; 41354 ; Taiwan

刊名：Journal of Engineering Thermophysics

出版年：2015

作者：Nourollah Ahmadi (1)
Alain Audebert (1)
Malcolm J Bennett (2)
Anthony Bishopp (2)
Antonio Costa de Oliveira (3)
Brigitte Courtois (1)
Abdala Diedhiou (4) (5)
Anne Di茅vart (1)
Pascal Gantet (6) (7)
Alain Ghesqui猫re (8)
Emmanuel Guiderdoni (1)
Amelia Henry (9)
Yoshiaki Inukai (10)
Leon Kochian (11)
Laurent Laplaze (5) (8)
Mikael Lucas (8)
Doan Trung Luu (12)
Baboucarr Manneh (13)
Xiaorong Mo (14)
Raveendran Muthurajan (15)
Christophe P茅rin (1)
Adam Price (16)
Sabariappan Robin (15)
Herv茅 Sentenac (12)
Bassirou Sine (17) (5)
Yusaku Uga (18)
Anne Ali茅nor V茅ry (12)
Matthias Wissuwa (19)
Ping Wu (14)
Jian Xu (20)

1. CIRAD ; UMR AGAP ; 34398 ; Montpellier Cedex 5 ; France
2. Centre for Plant Integrative Biology ; University of Nottingham ; Loughborough ; LE12 5RD ; UK
3. UFPel ; Plant Genomics and Breeding Center ; Pelotas ; Brazil
4. Universit茅 Cheikh Anta Diop (UCAD) ; D茅partement de Biologie V茅g茅tale ; Laboratoire Commun de Microbiologie IRD/ISRA/UCAD ; Centre de Recherche de Bel Air - BP 1386 CP 18524 ; Dakar ; S茅n茅gal
5. Laboratoire Mixte International Adaptation des Plantes et microorganismes associ茅s aux Stress Environnementaux (LAPSE) ; Centre de Recherche de Bel Air - BP 1386 CP 18524 ; Dakar ; S茅n茅gal
6. Universit茅 Montpellier 2 ; UMR DIADE ; Montpellier ; France
7. IRD ; LMI RICE ; USTH ; Agronomical Genetics Institute ; Hanoi ; Vietnam
8. IRD ; UMR DIADE ; Montpellier ; France
9. IRRI ; Los Ba帽os ; Philippines
10. International Cooperation Center for Agricultural Education (ICCAE) ; Nagoya University ; Furo-cho ; Chikusa ; Nagoya ; 464-8601 ; Japan
11. Robert W. Holley Center for Agriculture and Health ; USDA-ARS and Department of Plant Biology ; Cornell University ; Ithaca ; NY ; 14853 ; USA
12. Biochimie et Physiologie Mol茅culaire des Plantes ; Institut de Biologie Int茅grative des Plantes ; UMR 5004 CNRS/386 INRA/Montpellier SupAgro/Universit茅 Montpellier 2 ; F-34060 ; Montpellier Cedex 2 ; France
13. Africa Rice Center ; AfricaRice Sahel Regional Station ; B.P. 96 ; St Louis ; Senegal
14. State Key Laboratory of Plant Physiology and Biochemistry ; College of Life Science ; Zhejiang University ; Hangzhou ; 310058 ; China
15. Tamil Nadu Agricultural University ; 641003 ; Coimbatore ; India
16. University of Aberdeen ; Aberdeen ; AB24 3UU ; UK
17. ISRA ; CERAAS ; Thi猫s ; Senegal
18. National Institute of Agrobiological Sciences (NIAS) ; 2-1-2 Kannondai ; Tsukuba ; Ibaraki ; 305-8602 ; Japan
19. Japan International Research Center for Agricultural Sciences (JIRCAS) ; 1-1 Ohwashi ; Tsukuba ; 305-8686 ; Japan
20. Department of Biological Sciences and NUS Centre for BioImaging Sciences ; Faculty of Science ; National University of Singapore ; Singapore ; 117543 ; Singapore

关键词：Ideotype ; Breeding ; Phenotyping ; Genetic and molecular controls ; Rice ; Roots

刊名：Rice

出版年：2014

作者：Gary S McDowell (1) (3)
Christopher J Hindley (1) (4)
Guy Lippens (2)
Isabelle Landrieu (2)
Anna Philpott (1)

1. Department of Oncology ; MRC/Hutchison Research Centre ; University of Cambridge ; Cambridge Biomedical Campus ; Cambridge ; CB2 0XZ ; UK
3. Current address ; Center for Regenerative and Developmental Biology ; Department of Biology ; Tufts University ; 200 Boston Avenue ; Medford ; MA ; 02155 ; USA
4. Current address ; The Gurdon Institute ; University of Cambridge ; Tennis Court Road ; Cambridge ; CB2 1QN ; UK
2. CNRS ; Universit茅 de Lille 1 ; UMR 8576 ; Villeneuve d鈥橝scq ; France

关键词：Phosphorylation ; Intrinsic disorder ; Protein NMR ; Xenopus laevis ; Neurogenin ; Protein stability ; Transcription factor ; bHLH proteins ; Protein folding

刊名：BMC Biochemistry

出版年：2014