作者：David D. Chinellato (1)
Irving R. Epstein (2) (3)
Dan Braha (2) (4)
Yaneer Bar-Yam (2)
Marcus A. M. de Aguiar (1) (2)

1. Instituto de F铆sica 鈥楪leb Wataghin鈥? Universidade Estadual de Campinas ; Unicamp ; Campinas ; SP ; 13083-970 ; Brazil
2. New England Complex Systems Institute ; Cambridge ; MA ; 02138 ; USA
3. Department of Chemistry ; MS015 ; Brandeis University ; Waltham ; MA ; 02454 ; USA
4. University of Massachusetts ; Dartmouth ; MA ; 02747 ; USA

关键词：Networks ; Finite systems ; Voter model ; External perturbations ; Ising model

刊名：Journal of Statistical Physics

出版年：2015

作者：Daniel Magee (1) (2)
Rachel Beard (1) (2)
Marc A. Suchard (3) (5)
Philippe Lemey (4)
Matthew Scotch (1) (2)

1. Department of Biomedical Informatics ; Arizona State University ; 13212 E. Shea Blvd. ; Scottsdale ; 85259 ; AZ ; USA
2. Center for Environmental Security and Security and Defense Systems Initiative ; Biodesign Institute ; Arizona State University ; P.O. Box 875904 ; Tempe ; 85287-5904 ; AZ ; USA
3. Departments of Biomathematics and Human Genetics ; David Geffen School of Medicine ; University of California ; Los Angeles ; Los Angeles ; CA ; USA
5. Department of Biostatistics ; UCLA Fielding School of Public Health ; University of California ; Los Angeles ; Los Angeles ; CA ; USA
4. Department of Microbiology and Immunology ; KU Leuven ; Leuven ; Belgium

刊名：Archives of Virology

出版年：2015

作者：Ulrich Beuers (1)
M. Eric Gershwin (2)

1. Department of Gastroenterology and Hepatology ; Tytgat Institute for Liver and Intestinal Research ; Academic Medical Center ; University of Amsterdam ; P.O. Box 22600 ; 1100 DD ; Amsterdam ; The Netherlands
2. Division of Rheumatology ; Allergy and Clinical Immunology ; University of California at Davis School of Medicine ; Davis ; CA ; 95616 ; USA

关键词：Primary biliary cirrhosis ; Environmental factors ; Biologics ; Genetics ; Autoimmune hepatitis ; Progressive sclerosing cholangitis

刊名：Clinical Reviews in Allergy & Immunology

出版年：2015

作者：Rui Zhu (1)
Angabin Matin (2)

1. Department of Systems Medicine and Bioengineering ; Houston Methodist Research Institute ; Houston ; Texas ; 77030 ; USA
2. Department of Genetics ; The University of Texas M.D. Anderson Cancer Center ; Houston ; Texas ; 77030 ; USA

关键词：Congenic strain ; Chromosome substitution strain ; M19 ; Testicular germ cell tumor ; Modifiers ; Epistasis

刊名：BMC Genetics

出版年：2014

作者：Timothy H Ciesielski (1) (2)
Sarah A Pendergrass (3) (4)
Marquitta J White (1) (2) (5)
Nuri Kodaman (1) (2) (5)
Rafal S Sobota (1) (2) (5)
Minjun Huang (1)
Jacquelaine Bartlett (2)
Jing Li (1)
Qinxin Pan (1)
Jiang Gui (2) (6)
Scott B Selleck (4)
Christopher I Amos (2) (6)
Marylyn D Ritchie (3) (4)
Jason H Moore (1) (2) (6)
Scott M Williams (1) (2)

1. Department of Genetics ; Geisel School of Medicine at Dartmouth ; Hanover ; NH ; 03755 ; USA
2. Institute for Quantitative Biomedical Sciences ; Dartmouth College ; Hanover ; NH ; 03755 ; USA
3. Center for Systems Genomics ; Pennsylvania State University ; University Park ; PA ; 16802 ; USA
4. Department of Biochemistry & Molecular Biology ; Pennsylvania State University ; University Park ; PA ; 16802 ; USA
5. Center for Human Genetics Research ; Vanderbilt University ; Nashville ; TN ; 37232-0700 ; USA
6. Community and Family Medicine ; Section of Biostatistics & Epidemiology ; Geisel School of Medicine ; Hanover ; NH ; 03766 ; USA

关键词：Replication ; Validation ; Complex disease ; Heterogeneity ; GWAS ; Omics ; Type 2 error ; Type 1 error ; False negatives ; False positives

刊名：BioData Mining

出版年：2014

作者：Noelle D Germain (13)
Pin-Fang Chen (13)
Alex M Plocik (13)
Heather Glatt-Deeley (13)
Judith Brown (14)
James J Fink (15)
Kaitlyn A Bolduc (15)
Tiwanna M Robinson (15)
Eric S Levine (15)
Lawrence T Reiter (16)
Brenton R Graveley (13) (17)
Marc Lalande (13)
Stormy J Chamberlain (13)

13. Department of Genetics and Developmental Biology ; University of Connecticut Health Center ; 400 Farmington Avenue ; Farmington ; CT ; 06032 ; USA
14. Chromosome Core ; Department of Molecular and Cell Biology and Department of Allied Health Sciences ; University of Connecticut ; 354 Mansfield Road ; Storrs ; CT ; 06269 ; USA
15. Department of Neuroscience ; University of Connecticut Health Center ; 263 Farmington Avenue ; Farmington ; CT ; 06030 ; USA
16. Department of Neurology ; University of Tennessee Health Science Center ; 855 Monroe Avenue ; Suite 415 ; Memphis ; TN ; 38163 ; USA
17. University of Connecticut Institute for Systems Genomics ; Farmington ; CT ; 06030 ; USA

关键词：UBE3A ; autism ; induced pluripotent stem cells ; 15q duplication ; Angelman syndrome

刊名：Molecular Autism

出版年：2014

作者：Nagendra K Chaturvedi (22)
Riyaz A Mir (22)
Vimla Band (22) (23)
Shantaram S Joshi (22)
Chittibabu Guda (22) (23) (24) (25)

22. Department of Genetics ; Cell Biology and Anatomy ; University of Nebraska Medical Center ; 985870 Nebraska Medical Center ; Omaha ; NE ; 68198 ; USA
23. Fred and Pamela Buffet Cancer Center ; Omaha ; USA
24. Eppley Institute for Cancer Research ; Omaha ; USA
25. Bioinformatics and Systems Biology Core ; University of Nebraska Medical Center ; Omaha ; NE ; 68198-5805 ; USA

关键词：Protein subcellular localization ; ngLOC prediction ; Gene cloning ; Experimental validation ; GFP fusion ; Live cell imaging/confocal microscopy

刊名：BMC Research Notes

出版年：2014

作者：Kerri L Steenwerth (1)
Amanda K Hodson (2)
Arnold J Bloom (3)
Michael R Carter (4)
Andrea Cattaneo (5)
Colin J Chartres (6)
Jerry L Hatfield (7)
Kevin Henry (8) (9)
Jan W Hopmans (2)
William R Horwath (2)
Bryan M Jenkins (10)
Ermias Kebreab (11)
Rik Leemans (12)
Leslie Lipper (13)
Mark N Lubell (14)
Siwa Msangi (15)
Ravi Prabhu (16)
Matthew P Reynolds (17)
Samuel Sandoval Solis (2)
William M Sischo (18)
Michael Springborn (19)
Pablo Tittonell (20)
Stephen M Wheeler (21)
Sonja J Vermeulen (22)
Eva K Wollenberg (23)
Lovell S Jarvis (24)
Louise E Jackson (2)

1. Crops Pathology and Genetics Research Unit ; Agricultural Research Service ; United States Department of Agriculture (ARS/USDA) ; c/o Department of Viticulture and Enology ; RMI North ; Rm. 1151 ; 595 Hilgard Lane ; Davis ; CA ; 95616 ; USA
2. Department of Land ; Air and Water Resources ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
3. Department of Plant Sciences ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
4. Department of Agricultural and Resource Economics ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
5. Climate Smart Agriculture Project ; Food and Agriculture Organization of the U.N. ; Viale delle Terme di Caracalla ; 00100 ; Rome ; Italy
6. eWater ; University of Canberra Innovation Centre ; Building 22 ; University Drive South ; Bruce ; ACT 2617 ; Australia
7. National Laboratory for Agriculture and the Environment ; ARS/USDA ; Ames ; IA ; USA
8. Where the Rain Falls ; CARE France ; 71 rue Archereau ; Paris ; 75019 ; France
9. School of Global Environmental Sustainability ; Colorado State University ; 108 Johnson Hall ; Fort Collins ; CO ; 80523 ; USA
10. Department of Biological and Agricultural Engineering ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
11. Department of Animal Science ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
12. Environmental Sciences ; Wageningen University ; P.O. Box 47 ; 6700AA ; Wageningen ; the Netherlands
13. Agricultural and Development Economic Analysis Division ; Food and Agriculture Organization of the U.N. ; Viale delle Terme di Caracalla ; 00100 ; Rome ; Italy
14. Department of Environmental Science and Policy ; Center for Environmental Policy and Behavior ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
15. Environment and Production Technology Division ; International Food Policy Research Institute (IFPRI) ; 2033 K St. ; NW ; Washington ; DC ; 20006-1002 ; USA
16. World Agroforestry Center (ICRAF) ; P.O. Box 30677 ; 00100 ; Nairobi ; Kenya
17. Plant ; International Maize and Wheat Improvement Center ; Consultative Group on International Agricultural Research (CGIAR) Apdo ; Postal 6-641 ; 06600 ; Mexico ; D.F. ; Mexico
18. Food- and Water-borne Disease Research Program ; College of Veterinary Medicine ; Washington State University ; PO Box 646610 ; Pullman ; WA ; 99164-6610 ; USA
19. Department of Environmental Science and Policy ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
20. Plant Sciences ; Wageningen University ; P.O. Box 563 ; 6700AN ; Wageningen ; the Netherlands
21. Department of Landscape Architecture ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
22. Climate Change ; Agriculture and Food Security ; Consultative Group on International Agricultural Research (CGIAR) ; Department of Plant and Environmental Sciences ; University of Copenhagen ; Rolighedsvej 21 ; DK-1958 ; Frederiksberg C ; Denmark
23. Gund Institute for Ecological Economics and Rubenstein School of Environment and Natural Resources ; University of Vermont ; 617 Main Street ; Burlington ; Vermont ; 05405 ; USA
24. Department of Agriculture and Resource Economics ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA

刊名：Agriculture & Food Security

出版年：2014

作者：Francesco Abate (1) (2) (3)
Sakellarios Zairis (2)
Elisa Ficarra (3)
Andrea Acquaviva (3)
Chris H Wiggins (2) (6) (7)
Veronique Frattini (5)
Anna Lasorella (5)
Antonio Iavarone (5)
Giorgio Inghirami (4)
Raul Rabadan (1) (2)

1. Department of Biomedical Informatics ; Columbia University ; 1130 St. Nicholas Ave ; New York ; NY ; 10032 ; USA
2. Center for Computational Biology and Bioinformatics ; Columbia University ; 1130 St. Nicholas Ave ; New York ; NY ; 10032 ; USA
3. Department of Control and Computer Engineering ; Politecnico di Torino ; Torino ; 10129 ; Italy
6. Department of Applied Physics and Applied Mathematics ; The Fu Foundation School for Engineering and Applied Sciences ; Columbia University ; 500 W. 120th Street ; Mudd 200 ; MC 4701 ; New York ; New York ; 10027 ; USA
7. Institute for Data Sciences and Engineering ; Columbia University ; 500 W. 120th Street ; Mudd 524 ; New York ; New York ; 10027 ; USA
5. Institute for Cancer Genetics ; Columbia University Medical Center ; New York ; New York ; USA
4. Department of Pathology ; Center for Experimental Research and Medical Studies ; Laboratory of Functional Genomics ; University of Torino ; Torino ; Italy

关键词：Gene fusion ; Next ; generation sequencing ; Machine learning

刊名：BMC Systems Biology

出版年：2014

作者：Rahul C Deo (1) (2) (3) (4) (5)
Gabriel Musso (5) (6)
Murat Tasan (5) (7)
Paul Tang (3)
Annie Poon (3)
Christiana Yuan (1)
Janine F Felix (8)
Ramachandran S Vasan (10) (9)
Rameen Beroukhim (11) (6)
Teresa De Marco (2)
Pui-Yan Kwok (1) (3)
Calum A MacRae (5)
Frederick P Roth (12) (13) (5) (7)

1. Cardiovascular Research Institute ; University of California ; San Francisco ; CA ; 94158 ; USA
2. Department of Medicine ; University of California ; San Francisco ; CA ; 94143 ; USA
3. Institute for Human Genetics ; University of California ; San Francisco ; CA ; 94158 ; USA
4. California Institute for Quantitative Biosciences ; San Francisco ; CA ; 94143 ; USA
5. Department of Biological Chemistry and Molecular Pharmacology ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
6. Department of Medicine ; Brigham and Women鈥檚 Hospital ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
7. Donnelly Centre and Departments of Molecular Genetics and Computer Science ; University of Toronto and Lunenfeld Research Institute ; Mt Sinai Hospital ; Toronto ; Ontario ; M5G 1X5 ; Canada
8. Department of Epidemiology ; Erasmus University Medical Center ; PO Box 2040 ; 3000 ; CA ; Rotterdam ; The Netherlands
10. Framingham Heart Study ; Boston University School of Medicine ; Framingham ; MA ; 01702 ; USA
9. Preventive Medicine and Cardiology Sections ; and Department of Medicine ; Boston University School of Medicine ; Boston ; MA ; 02118 ; USA
11. Center for Cancer Genome Discovery and Department of Cancer Biology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02215 ; USA
12. Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02215 ; USA
13. The Canadian Institute for Advanced Research ; Toronto ; ON ; M5G 1Z8 ; Canada

刊名：Genome Biology

出版年：2014