作者：Danny Challis (1) (2) (3)
Lilian Antunes (1) (2) (4)
Erik Garrison (5)
Eric Banks (6)
Uday S Evani (1) (2) (7)
Donna Muzny (1) (2)
Ryan Poplin (6)
Richard A Gibbs (1) (2)
Gabor Marth (5) (8)
Fuli Yu (1) (2) (9)

1. Human Genome Sequencing Center ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
2. Department of Molecular and Human Genetics ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
3. Present address ; Monsanto Company ; Ankeny ; IA ; 50021 ; USA
4. Present address ; Washington University School of Medicine ; Saint Louis ; MO ; 63110 ; USA
5. Department of Biology ; Boston College ; Wellcome Trust Sanger Institute ; Chestnut Hill ; MA ; 02467 ; USA
6. Program in Medical and Population Genetics ; Broad Institute of Harvard and MIT ; Cambridge ; MA ; 02142 ; USA
7. Present address ; New York Genome Center ; New York ; NY ; 10013 ; USA
8. Present address ; Department of Human Genetics and Utah Center for Genetic Discovery ; University of Utah School of Medicine ; Salt Lake City ; UT ; 84112 ; USA
9. Institute of Neurology ; Tianjin Medical University General Hospital ; Tianjin ; 300052 ; China

关键词：INDEL ; 1000 Genomes Project ; Distribution ; Mutagenesis

刊名：BMC Genomics

出版年：2015

作者：Lia Di (13)
Pedro E Pagan (13)
Daniel Packer (14)
Che L Martin (15)
Saymon Akther (13)
Girish Ramrattan (13)
Emmanuel F Mongodin (17)
Claire M Fraser (17)
Steven E Schutzer (18)
Benjamin J Luft (19)
Sherwood R Casjens (20)
Wei-Gang Qiu (13) (15) (16) (21)

13. Department of Biological Sciences ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
14. Department of Computer Science ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
15. Department of Biology ; The Graduate Center ; City University of New York ; 10016 ; New York ; USA
17. Institute for Genome Sciences ; University of Maryland School of Medicine ; 21201 ; Baltimore ; MD ; USA
18. Department of Medicine ; New Jersey Medical School ; Rutgers ; The State University of New Jersey ; 07103 ; Newark ; NJ ; USA
19. Department of Medicine ; Health Science Center ; Stony Brook University ; 11794 ; Stony Brook ; NY ; USA
20. Department of Pathology ; Division of Molecular Cell Biology and Immunology ; University of Utah School of Medicine ; 84112 ; Salt Lake City ; UT ; USA
16. Center for Translational and Basic Research ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
21. Department of Biological Sciences ; Hunter College of the City University of New York ; 695 Park Avenue ; 10065 ; New York ; NY ; USA

关键词：Lyme disease ; Vector ; borne relapsing fever ; Genome browser ; Recombination ; Population genomics

刊名：BMC Bioinformatics

出版年：2014

作者：Aakrosh Ratan (1) (3)
Thomas L Olson (2)
Thomas P Loughran Jr (2)
Webb Miller (1)

1. Center for Comparative Genomics and Bioinformatics ; Pennsylvania State University ; 506 ; Wartik Laboratory ; University Park ; PA ; 16802 ; USA
3. Department of Public Health Sciences and Center for Public Health Genomics ; University of Virginia ; Charlottesville ; VA ; 22908 ; USA
2. Department of Medicine ; Hematology and Oncology ; and the University of Virginia Cancer Center ; University of Virginia ; Charlottesville ; VA ; 22908 ; USA

关键词：Indels ; Variants ; Sequencing analysis

刊名：BMC Bioinformatics

出版年：2015

作者：Qiyun Zhu (1)
Michael Kosoy (2)
Katharina Dittmar (1)

1. Department of Biological Sciences ; University at Buffalo ; State University of New York ; 109 Cooke Hall ; Buffalo ; NY ; 14260 ; USA
2. Division of Vector-Borne Diseases ; Centers for Disease Control and Prevention ; 3156 Rampart Road ; Fort Collins ; CO ; 80521 ; USA

关键词：Horizontal gene transfer ; Bacterial genomes ; BLAST

刊名：BMC Genomics

出版年：2014

作者：Jeonghee Cho (5) (6) (7) (8)
Adam J Bass (5) (6) (9)
Michael S Lawrence (9)
Kristian Cibulskis (9)
Ahye Cho (7) (8)
Shi-Nai Lee (10)
Mai Yamauchi (5)
Nikhil Wagle (5) (6)
Panisa Pochanard (5) (6)
Nayoung Kim (7) (8)
Angela KJ Park (7) (8)
Jonghwa Won (10)
Hyung-Suk Hur (10)
Heidi Greulich (11) (5) (9)
Shuji Ogino (5)
Carrie Sougnez (9)
Douglas Voet (9)
Josep Tabernero (12)
Jose Jimenez (13)
Jose Baselga (14)
Stacey B Gabriel (9)
Eric S Lander (9)
Gad Getz (9)
Michael J Eck (15) (16)
Woong-Yang Park (7) (8)
Matthew Meyerson (16) (5) (6) (9)

5. Department of Medical Oncology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02115 ; USA
6. Center for Cancer Genome Discovery ; Dana-Farber Cancer Institute ; Boston ; MA ; 02115 ; USA
7. Samsung Genome Institute ; Samsung Medical Center ; Seoul ; 135-967 ; Republic of Korea
8. Samsung Advanced Institute for Health Sciences and Technology ; SungKyunKwan University ; Seoul ; 135-967 ; Republic of Korea
9. The Broad Institute of MIT and Harvard ; Cambridge ; MA ; 02142 ; USA
10. Oncology team ; Mogam Biotechnology Research Institute ; Yongin ; 446-799 ; Republic of Korea
11. Department of Medicine ; Brigham and Women鈥檚 Hospital ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
12. Molecular Pathology Laboratory ; Vall d鈥橦ebron University Hospital ; Universitat Aut貌noma de Barcelona ; Barcelona ; Spain
13. Memorial Sloan-Kettering Cancer Center ; New York ; NY ; 10065 ; USA
14. Department of Cancer Biology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02115 ; USA
15. Department of Biological Chemistry and Molecular Pharmacology ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
16. Department of Pathology ; Harvard Medical School ; Boston ; MA ; 02115 ; USA

刊名：Molecular Cancer

出版年：2014

作者：Susan M Grimes (5)
Hanlee P Ji (5) (6)

5. Stanford Genome Technology Center ; Stanford University ; Palo Alto ; CA ; 94304 ; USA
6. Division of Oncology ; Stanford University School of Medicine ; Palo Alto ; CA ; 94304 ; USA

关键词：Next generation sequencing ; Clinical studies ; Laboratory information management ; Pathology ; Genomics ; Genetics

刊名：BMC Bioinformatics

出版年：2014

作者：Rahul C Deo (1) (2) (3) (4) (5)
Gabriel Musso (5) (6)
Murat Tasan (5) (7)
Paul Tang (3)
Annie Poon (3)
Christiana Yuan (1)
Janine F Felix (8)
Ramachandran S Vasan (10) (9)
Rameen Beroukhim (11) (6)
Teresa De Marco (2)
Pui-Yan Kwok (1) (3)
Calum A MacRae (5)
Frederick P Roth (12) (13) (5) (7)

1. Cardiovascular Research Institute ; University of California ; San Francisco ; CA ; 94158 ; USA
2. Department of Medicine ; University of California ; San Francisco ; CA ; 94143 ; USA
3. Institute for Human Genetics ; University of California ; San Francisco ; CA ; 94158 ; USA
4. California Institute for Quantitative Biosciences ; San Francisco ; CA ; 94143 ; USA
5. Department of Biological Chemistry and Molecular Pharmacology ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
6. Department of Medicine ; Brigham and Women鈥檚 Hospital ; Harvard Medical School ; Boston ; MA ; 02115 ; USA
7. Donnelly Centre and Departments of Molecular Genetics and Computer Science ; University of Toronto and Lunenfeld Research Institute ; Mt Sinai Hospital ; Toronto ; Ontario ; M5G 1X5 ; Canada
8. Department of Epidemiology ; Erasmus University Medical Center ; PO Box 2040 ; 3000 ; CA ; Rotterdam ; The Netherlands
10. Framingham Heart Study ; Boston University School of Medicine ; Framingham ; MA ; 01702 ; USA
9. Preventive Medicine and Cardiology Sections ; and Department of Medicine ; Boston University School of Medicine ; Boston ; MA ; 02118 ; USA
11. Center for Cancer Genome Discovery and Department of Cancer Biology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02215 ; USA
12. Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology ; Dana-Farber Cancer Institute ; Boston ; MA ; 02215 ; USA
13. The Canadian Institute for Advanced Research ; Toronto ; ON ; M5G 1Z8 ; Canada

刊名：Genome Biology

出版年：2014

作者：Aris Katzourakis (1)
Pakorn Aiewsakun (1)
Hongwei Jia (2)
Nathan D Wolfe (3) (4) (5)
Matthew LeBreton (6)
Anne D Yoder (7)
William M Switzer (2)

1. Department of Zoology ; University of Oxford ; Oxford ; South Parks Road ; Oxford ; OX1 3PS ; UK
2. Laboratory Branch ; Division of HIV/AIDS ; National Center for HIV ; Hepatitis ; STD ; and TB Prevention ; Centers for Disease Control and Prevention ; Atlanta ; GA ; 30333 ; USA
3. Metabiota ; One Sutter ; Suite 600 ; San Francisco ; CA ; 94104 ; USA
4. Program in Human Biology ; Stanford University ; Stanford ; CA ; 94305 ; USA
5. Global Viral ; One Sutter ; Suite 600 ; San Francisco ; CA ; 94104 ; USA
6. Mosaic (Environment ; Health ; Data ; Technology) ; Yaound茅 ; Cameroon
7. Department of Biology ; Duke University ; Durham ; NC ; 27708 ; USA

关键词：Paleovirology ; Endogenous retrovirus ; Foamy virus ; Co ; evolution ; PSFVgal ; PSFVaye ; ChrEFV

刊名：Retrovirology

出版年：2014

作者：Colin B Begg (1)
Venkatraman E Seshan (1)
Emily C Zabor (1)
Helena Furberg (1)
Arshi Arora (1)
Ronglai Shen (1)
Jodi K Maranchie (2)
Matthew E Nielsen (3)
W Kimryn Rathmell (4)
Sabina Signoretti (5)
Pheroze Tamboli (6)
Jose A Karam (7)
Toni K Choueiri (8)
A Ari Hakimi (9)
James J Hsieh (10)

1. Department of Epidemiology and Biostatistics ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; USA
2. Department of Urology ; University of Pittsburgh Medical Center ; Pittsburgh ; PA ; USA
3. Departments of Urology ; Epidemiology and Health Policy and Management and Surgery ; University of North Carolina at Chapel Hill ; Chapel Hill ; NC ; USA
4. Departments of Medicine and Genetics ; Lineberger Comprehensive Cancer Center ; University of North Carolina ; Chapel Hill ; NC ; USA
5. Department of Pathology ; Brigham and Womens鈥?Hospital ; Harvard Medical School ; Boston ; MA ; USA
6. Department of Pathology ; The University of Texas MD Anderson Cancer Center ; Houston ; TX ; USA
7. The University of Texas MD Anderson Cancer Center ; Houston ; TX ; USA
8. Department of Medical Oncology ; Dana-Farber Cancer Institute ; Brigham and Women鈥檚 Hospital ; Harvard Medical School ; Boston ; MA ; USA
9. Department of Surgery ; Urology Service ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; USA
10. Human Oncology and Pathogenesis Program ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; USA

关键词：Etiologic heterogeneity ; Kidney cancer ; Tumor sub ; types

刊名：BMC Medical Research Methodology

出版年：2014

作者：Alexey I Makunin (1) (2)
Polina V Dementyeva (1)
Alexander S Graphodatsky (1) (3)
Vitaly T Volobouev (4)
Anna V Kukekova (5)
Vladimir A Trifonov (1) (3)

1. Institute of Molecular and Cellular Biology S袙 RAS ; Novosibirsk ; 630090 ; Russia
2. Theodosius Dobzhansky Center for Genome Bioinformatics ; St. Petersburg State University ; St. Petersburg ; Russia
3. Novosibirsk State University ; Novosibirsk ; Russia
4. Museum National d鈥橦istoire Naturelle ; Origine ; Structure et Evolution de la Biodiversite ; Paris ; France
5. Department of Animal Sciences ; The University of Illinois at Urbana-Champaign ; Champaign ; USA

关键词：B chromosomes ; Segmental duplication ; Proto ; oncogenes ; Vertebrates ; Evolution of genomes

刊名：Molecular Cytogenetics

出版年：2014