作者： Prasun Bandyopadhyay ; Soubhagya Kumar Bhuyan ; Pramod Kumar Yadava…

关键词：Agriculture ; Holobiont ; Interactomes ; Mycorrhiza ; Microbiome engineering ; Plant–microbe interaction ; Rhizosphere

刊名：Protoplasma

出版年：2017

关键词：Active peptides ; Anaerobe ; Antibiotic ; Anticancer ; Bacteriocin ; Bacteriotherapy ; Microbiome

刊名：Advances in Biochemical Engineering/Biotechnology

出版年：2016

作者： Nan Shen ; Jose C. Clemente

关键词：Microbiome ; Allergy ; IBD ; Antibiotics ; Dietary intervention ; Fecal transplant

刊名：Current Allergy and Asthma Reports

出版年：2015

作者：Bo Xu (1) (2) (3) (4)
Weijiang Xu (1) (2) (3) (4)
Junjun Li (1) (2) (3) (4)
Liming Dai (1)
Caiyun Xiong (1)
Xianghua Tang (1) (2) (3) (4)
Yunjuan Yang (1) (2) (3) (4)
Yuelin Mu (1) (2) (3) (4)
Junpei Zhou (1) (2) (3) (4)
Junmei Ding (1) (2) (3) (4)
Qian Wu (1) (2) (3) (4)
Zunxi Huang (1) (2) (3) (4)

1. School of Life Science ; Yunnan Normal University ; Kunming ; 650500 ; China
2. Engineering Research Center of Sustainable Development and Utilization of Biomass Energy ; Ministry of Education ; Kunming ; 650500 ; China
3. Key Laboratory of Yunnan for Biomass Energy and Biotechnology of Environment ; Kunming ; 650500 ; China
4. Key Laboratory of Enzyme Engineering ; Yunnan Normal University ; Kunming ; 650500 ; China

关键词：Gastrointestinal microbiota ; Rhinopithecus bieti ; Metagenomics ; Lignocellulose degradation ; Pyrosequencing

刊名：BMC Genomics

出版年：2015

作者：A. D. Vega-Avila (1) (2)
T. Gumiere (1)
P. A. M. Andrade (1)
J. E. Lima-Perim (1)
A. Durrer (1)
M. Baigori (3)
F. Vazquez (2)
F. D. Andreote (1)

1. Department of Soil Science ; 鈥淟uiz de Queiroz鈥?College of Agriculture ; University of S茫o Paulo (ESALQ/USP) ; Av. Padua Dias ; 11 ; Piracicaba ; Brazil
2. Faculty of Engineering ; Institute of Biotechnology (IBT) ; University National of San Juan ; San Juan ; Argentina
3. PROIMI ; Industrial Microbiology Processes (CONICET) ; San Miguel de Tucum谩n ; Tucum谩n ; Argentina

关键词：Bacterial communities ; Cultivation ; independent analysis ; Plant鈥搈icrobe interactions ; Rhizosphere microbiome ; Organic management

刊名：Antonie van Leeuwenhoek

出版年：2015

作者：Ohad Manor (1)
Elhanan Borenstein (1) (2) (3)

1. Department of Genome Sciences ; University of Washington ; Seattle ; WA ; 98195 ; USA
2. Department of Computer Science and Engineering ; University of Washington ; Seattle ; WA ; 98195 ; USA
3. Santa Fe Institute ; Santa Fe ; NM ; 87501 ; USA

刊名：Genome Biology

出版年：2015

作者：Harshita Sharma (1)
Yasunori Kinoshita (1)
Seiichi Fujiu (1) (2)
Shota Nomura (1)
Mizuho Sawada (2)
Shamim Ahmed (1) (6)
Masaki Shibuya (3)
Kosaku Shirai (3)
Syota Takamatsu (4)
Tsuyoshi Watanabe (4)
Hitoshi Yamazaki (5)
Ryohei Kamiyama (1)
Tetsuya Kobayashi (1)
Hidenao Arai (1)
Miho Suzuki (1)
Naoto Nemoto (1)
Ki Ando (1) (7)
Hidekazu Uchida (1)
Koichiro Kitamura (2)
Osamu Takei (3)
Koichi Nishigaki (1)

1. Department of Functional Materials Science ; Graduate School of Science and Engineering ; Saitama University ; 255 Shimo-okubo ; Saitama ; 338-8570 ; Japan
2. Janusys Corporation ; Saitama Industrial Technology Center ; 3-12-18 Kamiaoki ; Kawaguchi ; Saitama ; 334-0844 ; Japan
6. Department of Biochemistry and Molecular Biology ; Shahjalal University of Science and Technology ; Sylhet ; Bangladesh
3. Lifetech Co. ; Ltd ; 4074 Miyadera ; Iruma City ; Saitama ; 358-0014 ; Japan
4. Enplas Corporation ; 2-30-1 Namiki ; Kawaguchi City ; Saitama ; 332-0034 ; Japan
5. Finetech Corporation ; 1-7-1 ; Asagaya-minami Suginami-ku ; Tokyo ; Japan
7. Department of Electrical and Electronic Engineering ; Tokyo Denki University ; 5 Senjyu-Asahi-cho ; Adachi-ku ; Tokyo ; 120-8551 ; Japan

关键词：Microarray ; Multi ; parallel reactions ; Multi ; conditioner ; Lysozyme crystallization ; Microbiome analysis

刊名：BMC Biotechnology

出版年：2014

作者：Dan Knights (1) (2) (3) (4)
Mark S Silverberg (5)
Rinse K Weersma (6)
Dirk Gevers (2)
Gerard Dijkstra (6)
Hailiang Huang (7)
Andrea D Tyler (5)
Suzanne van Sommeren (6) (8)
Floris Imhann (6) (8)
Joanne M Stempak (5)
Hu Huang (9)
Pajau Vangay (9)
Gabriel A Al-Ghalith (9)
Caitlin Russell (10) (3)
Jenny Sauk (10)
Jo Knight (11)
Mark J Daly (12) (13) (2)
Curtis Huttenhower (14) (2)
Ramnik J Xavier (10) (2) (3)

1. Department of Computer Science and Engineering ; University of Minnesota ; Minneapolis ; Minnesota ; 55455 ; USA
2. Broad Institute of Harvard and MIT ; Cambridge ; Massachusetts ; 02142 ; USA
3. Center for Computational and Integrative Biology ; Massachusetts General Hospital and Harvard Medical School ; Boston ; Massachusetts ; 02114 ; USA
4. Biotechnology Institute ; University of Minnesota ; St. Paul ; Minnesota ; 55108 ; USA
5. Zane Cohen Centre for Digestive Diseases ; Mount Sinai Hospital IBD Group ; University of Toronto ; Toronto ; Ontario ; M5G 1X5 ; Canada
6. Department of Gastroenterology and Hepatology ; University Medical Center Groningen ; Groningen ; 9700RB ; The Netherlands
7. Analytic and Translational Genetics Unit ; Massachusetts General Hospital ; Boston ; Massachusetts ; 02114 ; USA
8. Department of Genetics ; University Medical Center Groningen ; Groningen ; 9700RB ; The Netherlands
9. Biomedical Informatics and Computational Biology ; University of Minnesota ; Minneapolis ; Minnesota ; 55455 ; USA
10. Division of Gastroenterology ; Massachusetts General Hospital and Harvard Medical School ; Boston ; Massachusetts ; 02114 ; USA
11. Department of Psychiatry ; University of Toronto ; Toronto ; Ontario ; M5T 1R8 ; Canada
12. Department of Medicine ; Analytic and Translational Genetics Unit ; Massachusetts General Hospital and Harvard Medical School ; Boston ; Massachusetts ; 02114 ; USA
13. Program in Medical and Population Genetics ; Broad Institute of Harvard and MIT ; Cambridge ; Massachusetts ; 02142 ; USA
14. Biostatistics Department ; Harvard School of Public Health ; Boston ; Massachusetts ; 02115 ; USA

刊名：Genome Medicine

出版年：2014

作者：Juan S Escobar (1)
Bernadette Klotz (2) (3)
Beatriz E Valdes (1) (4)
Gloria M Agudelo (1) (5)

1. Vidarium Nutrition ; Health and Wellness Research Center ; Grupo Nutresa ; Calle 8 sur #50-67 ; Medell铆n ; Colombia
2. Faculty of Engineering ; University of La Sabana ; Km. 7 Autopista Norte de Bogot谩 ; Ch铆a ; Colombia
3. Current address ; Instituto Alpina de Investigaci贸n ; Alpina S.A. ; Km. 3 v铆a Brice帽o-Sop贸 ; Sop贸 ; Colombia
4. Current address ; Faculty of Health ; Instituci贸n Universitaria Colegio Mayor de Antioquia ; Carrera 78 #65-46 ; Medell铆n ; Colombia
5. Current address ; Nutrition and Dietetic School ; University of Antioquia ; Calle 67 #53-108 ; Medell铆n ; Colombia

关键词：Bacterial diversity ; Microbiome ; Geography ; Firmicutes ; Bacteroidetes ; Obesity ; Pyrosequencing ; Latin America ; Colombia

刊名：BMC Microbiology

出版年：2014

作者：Falk Hildebrand (1) (2) (3)
Raul Tadeo (1) (2) (6) (7)
Anita Yvonne Voigt (3) (4)
Peer Bork (3) (5)
Jeroen Raes (1) (2) (6) (7)

1. Department of Structural Biology ; Vlaams Instituut voor Biotechnologie (VIB) ; Pleinlaan 2 ; Brussels ; 1050 ; Belgium
2. Department of Bioscience Engineering ; Vrije Universiteit Brussel ; Pleinlaan 2 ; Brussels ; 1050 ; Belgium
3. Structural & Computational Biology Unit ; European Molecular Biology Laboratory (EMBL) ; Meyerhofstrasse 1 ; Heidelberg ; 69117 ; Germany
6. Department of Microbiology and Immunology ; REGA institute ; KU Leuven ; Herestraat 49 ; Leuven ; 3000 ; Belgium
7. VIB Center for the Biology of Disease ; Herestraat 49 ; Leuven ; 3000 ; Belgium
4. Molecular Medicine Partnership Unit (MMPU) ; University of Heidelberg and European Molecular Biology Laboratory ; Heidelberg ; Germany
5. Max Delbr眉ck Centre for Molecular Medicine ; Robert-R枚ssle-Str. 10 ; Berlin ; 13125 ; Germany

关键词：OTU ; 16S rDNA gene ; Pipeline ; Metagenomics ; Demultiplexing

刊名：Microbiome

出版年：2014