搜索页_+SNV+calling

常用资源

电子图书

期刊论文

学位会议

在“SpringerLink电子期刊”中，命中：21条，耗时：小于0.01 秒

在所有数据库中总计命中：9条

1. JACUSA: site-specific identification of RNA editing events from replicate sequencing data

作者： Michael Piechotta ; Emanuel Wyler ; Uwe Ohler ; Markus Landthaler…

关键词：SNV ; RNA editing ; ADAR ; APOBEC3 ; Variant calling

刊名：BMC Bioinformatics

出版年：2017

2. Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers

作者： Ariane L. Hofmann ; Jonas Behr ; Jochen Singer ; Jack Kuipers…

关键词：SNV ; Variant calling ; Cancer genomics ; Exome sequencing ; Variant caller integration

刊名：BMC Bioinformatics

出版年：2017

3. Aligning to the sample-specific reference sequence to optimize the accuracy of next-generation sequencing analysis for hepatitis B virus

作者： Wen-Chun Liu ; Chih-Peng Lin ; Chun-Pei Cheng ; Cheng-Hsun Ho…

关键词：Alignment stage ; Coverage ; Divergence ; Single nucleotide variants

刊名：Hepatology International

出版年：2016

4. A simple data-adaptive probabilistic variant calling model

作者：Steve Hoffmann (1) (2) (3)
Peter F Stadler (2) (3) (4) (5) (6) (7) (8)
Korbinian Strimmer (10) (9)

1. Junior Research Group Transcriptome Bioinformatics ; University Leipzig ; H盲rtelstra脽e 16-18 ; Leipzig ; Germany
2. Interdisciplinary Center for Bioinformatics and Bioinformatics Group ; University Leipzig ; H盲rtelstra脽e 16-18 ; Leipzig ; Germany
3. LIFE Research Center for Civilization Diseases ; University Leipzig ; H盲rtelstra脽e 16-18 ; Leipzig ; Germany
4. Department of Theoretical Chemistry ; University Vienna ; W盲hringer Stra脽e 17 ; Vienna ; Austria
5. RNomics Group ; Fraunhofer Institute for Cell Therapy and Immunology 鈥?IZI ; Perlickstra脽e 1 ; Leipzig ; Germany
6. Max-Planck-Institute for Mathematics in the Sciences ; Inselstra脽e 22 ; Leipzig ; Germany
7. Center for non-coding RNA in Technology and Health ; University of Copenhagen ; Gr酶nneg氓rdsvej 3 ; Frederiksberg ; Denmark
8. Santa Fe Institute ; 1399 Hyde Park Road ; Santa Fe ; USA
10. Department of Epidemiology and Biostatistics ; Imperial College London ; Norfolk Place ; London W2 1PG ; UK
9. Institute for Medical Informatics ; Statistics and Epidemiology ; University of Leipzig ; H盲rtelstra脽e 16鈥?8 ; Leipzig ; D-04107 ; Germany

刊名：Algorithms for Molecular Biology

出版年：2015

5. Validation and assessment of variant calling pipelines for next-generation sequencing

作者：Mehdi Pirooznia (5)
Melissa Kramer (6)
Jennifer Parla (6)
Fernando S Goes (5)
James B Potash (7)
W Richard McCombie (6) (8)
Peter P Zandi (5) (9)

5. Department of Psychiatry and Behavioral Sciences ; Johns Hopkins University ; Baltimore ; MD ; 21205 ; USA
6. Stanley Institute for Cognitive Genomics ; Cold Spring Harbor Laboratory ; Woodbury ; NY ; 11797 ; USA
7. Department of Psychiatry ; Carver College of Medicine ; University of Iowa School of Medicine ; Iowa City ; IA ; 52242 ; USA
8. Watson School of Biological Science ; Cold Spring Harbor Laboratory ; Cold Spring Harbor ; NY ; 11724 ; USA
9. Department of Mental Health ; Johns Hopkins Bloomberg School of Public Health ; Baltimore ; MD ; 21205 ; USA

关键词：Variant calling pipelines ; Next ; generation sequencing ; Exome sequencing

刊名：Human Genomics

出版年：2014

6. Whole genome profiling of spontaneous and chemically induced mutations in Toxoplasma gondii

作者：Andrew Farrell (8)
Bradley I Coleman (8)
Brian Benenati (8)
Kevin M Brown (10) (9)
Ira J Blader (11) (9)
Gabor T Marth (8)
Marc-Jan Gubbels (8)

8. Department of Biology ; Boston College ; Higgins Hall 355 ; 140 Commonwealth Avenue ; Chestnut Hill ; MA ; 02467 ; USA
10. Department of Molecular Microbiology ; Washington University School of Medicine ; MPRB 9230 ; 4940 Parkview Place ; St. Louis ; MO ; 63110 ; USA
9. Department of Microbiology and Immunology ; University of Oklahoma Health Sciences Center ; 940 Stanton L. Young Blvd. ; BMSB 1053 ; Oklahoma City ; OK ; 73104 ; USA
11. Department of Microbiology and Immunology ; State University of New York ; 138 Farber Hall ; 3435 Main Street ; Buffalo ; NY ; 14214 ; USA

关键词：Whole genome sequencing ; Chemical mutagenesis ; In vitro adaptation ; SNV calling ; Apicomplexa

刊名：BMC Genomics

出版年：2014

7. Comparing a few SNP calling algorithms using low-coverage sequencing data

作者：Xiaoqing Yu (1)
Shuying Sun (1) (2)

关键词：Next generation sequencing ; SNP calling ; Low ; coverage ; Single ; sample ; SOAPsnp ; Atlas ; SNP2 ; SAMtools ; GATK

刊名：BMC Bioinformatics

出版年：2013

8. Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

作者：Huilei Xu (19)
John DiCarlo (19)
Ravi Vijaya Satya (19)
Quan Peng (19)
Yexun Wang (19)

刊名：BMC Genomics

出版年：2014

9. Evaluation of variant identification methods for whole genome sequencing data in dairy cattle

作者：Christine F Baes (1) (2)
Marlies A Dolezal (3) (4)
James E Koltes (5)
Beat Bapst (2)
Eric Fritz-Waters (5)
Sandra Jansen (6)
Christine Flury (1)
Heidi Signer-Hasler (1)
Christian Stricker (7)
Rohan Fernando (5)
Ruedi Fries (6)
Juerg Moll (2)
Dorian J Garrick (5)
James M Reecy (5)
Birgit Gredler (2)

1. School of Agricultural ; Forest and Food Sciences HAFL ; Bern University of Applied Sciences ; L盲nggasse 85 ; CH-3052 ; Zollikofen ; Switzerland
2. Qualitas AG ; Chamerstrasse 56a ; CH-6300 ; Zug ; Switzerland
3. Department VESPAUniversit脿 degli Studi di Milano ; 20133 ; Milan ; Italy
4. University of Veterinary Medicine Vienna ; Veterin盲rplatz 1 ; A-1210 ; Vienna ; Austria
5. Department of Animal Science ; Iowa State University ; 1221 Kildee Hall ; 50011-3150 ; Ames ; IA ; USA
6. Technische Universit盲t M眉nchen ; Liesel-Beckmann-Str. 1 ; D-85354 ; Freising ; Germany
7. agn Genetics GmbH ; 8b B枚rtjistrasse ; CH-7260 ; Davos ; Switzerland

关键词：Next ; generation sequencing analysis ; Single nucleotide variant identification ; Pipeline

刊名：BMC Genomics

出版年：2014

10. Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

作者：Kai-Yuen Tso (29)
Sau Dan Lee (29)
Kwok-Wai Lo (30)
Kevin Y Yip (29) (31) (32)

29. Department of Computer Science and Engineering ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
30. Department of Anatomical and Cellular Pathology ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
31. Hong Kong Bioinformatics Centre ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
32. CUHK-BGI Innovation Institute of Trans-omics ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong

关键词：Xenografts ; Nasopharyngeal carcinoma ; Contamination ; High ; throughput sequencing

刊名：BMC Genomics

出版年：2014

按检索点细分(21)

关键词(3)

文摘(18)

按出版年细分(21)

2017年(2)

2016年(1)

2015年(1)

2014年(6)

2013年(8)

2012年(1)

2011年(1)

2010年(1)

地址：北京市海淀区学院路29号邮编：100083

电话：办公室：(+86 10)66554848；文献借阅、咨询服务、科技查新：66554700