作者：Danny Challis (1) (2) (3)
Lilian Antunes (1) (2) (4)
Erik Garrison (5)
Eric Banks (6)
Uday S Evani (1) (2) (7)
Donna Muzny (1) (2)
Ryan Poplin (6)
Richard A Gibbs (1) (2)
Gabor Marth (5) (8)
Fuli Yu (1) (2) (9)

1. Human Genome Sequencing Center ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
2. Department of Molecular and Human Genetics ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
3. Present address ; Monsanto Company ; Ankeny ; IA ; 50021 ; USA
4. Present address ; Washington University School of Medicine ; Saint Louis ; MO ; 63110 ; USA
5. Department of Biology ; Boston College ; Wellcome Trust Sanger Institute ; Chestnut Hill ; MA ; 02467 ; USA
6. Program in Medical and Population Genetics ; Broad Institute of Harvard and MIT ; Cambridge ; MA ; 02142 ; USA
7. Present address ; New York Genome Center ; New York ; NY ; 10013 ; USA
8. Present address ; Department of Human Genetics and Utah Center for Genetic Discovery ; University of Utah School of Medicine ; Salt Lake City ; UT ; 84112 ; USA
9. Institute of Neurology ; Tianjin Medical University General Hospital ; Tianjin ; 300052 ; China

关键词：INDEL ; 1000 Genomes Project ; Distribution ; Mutagenesis

刊名：BMC Genomics

出版年：2015

作者：Lia Di (13)
Pedro E Pagan (13)
Daniel Packer (14)
Che L Martin (15)
Saymon Akther (13)
Girish Ramrattan (13)
Emmanuel F Mongodin (17)
Claire M Fraser (17)
Steven E Schutzer (18)
Benjamin J Luft (19)
Sherwood R Casjens (20)
Wei-Gang Qiu (13) (15) (16) (21)

13. Department of Biological Sciences ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
14. Department of Computer Science ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
15. Department of Biology ; The Graduate Center ; City University of New York ; 10016 ; New York ; USA
17. Institute for Genome Sciences ; University of Maryland School of Medicine ; 21201 ; Baltimore ; MD ; USA
18. Department of Medicine ; New Jersey Medical School ; Rutgers ; The State University of New Jersey ; 07103 ; Newark ; NJ ; USA
19. Department of Medicine ; Health Science Center ; Stony Brook University ; 11794 ; Stony Brook ; NY ; USA
20. Department of Pathology ; Division of Molecular Cell Biology and Immunology ; University of Utah School of Medicine ; 84112 ; Salt Lake City ; UT ; USA
16. Center for Translational and Basic Research ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
21. Department of Biological Sciences ; Hunter College of the City University of New York ; 695 Park Avenue ; 10065 ; New York ; NY ; USA

关键词：Lyme disease ; Vector ; borne relapsing fever ; Genome browser ; Recombination ; Population genomics

刊名：BMC Bioinformatics

出版年：2014

作者：Ohgew Kweon (1)
Seong-Jae Kim (1)
Jochen Blom (2)
Sung-Kwan Kim (3)
Bong-Soo Kim (4)
Dong-Heon Baek (5)
Su Inn Park (6)
John B Sutherland (1)
Carl E Cerniglia (1)

1. Division of Microbiology ; National Center for Toxicological Research/FDA ; Jefferson ; Arkansas ; USA
2. Center for Biotechnology ; Bielefeld University ; Bielefeld ; Nordrhein-Westfalen ; Germany
3. Department of Management ; University of Arkansas at Little Rock ; Little Rock ; Arkansas ; USA
4. Department of Life Science ; Hallym University ; Chuncheon ; Gangwon-do ; 200-702 ; Republic of Korea
5. Department of Oral Microbiology and Immunology ; School of Dentistry ; Dankook University ; Chonan ; Republic of Korea
6. Department of Computer Science and Engineering ; Texas A&M University ; College Station ; Texas ; USA

关键词：Mycobacterium ; PAH metabolism ; Pan ; genome ; Functional genomics ; Functional pan ; genome ; Phenotype network ; Evolution ; Epistasis ; Pleiotropy

刊名：BMC Evolutionary Biology

出版年：2015

作者：Ankit Malhotra (1)
Yong Wang (2)
Jill Waters (2)
Ken Chen (3)
Funda Meric-Bernstam (4) (5)
Ira M Hall (6) (7)
Nicholas E Navin (2) (3) (8)

1. The Jackson Laboratory for Genomic Medicine ; Farmington ; CT ; USA
2. Department of Genetics ; MD Anderson Cancer Center ; Houston ; TX ; USA
3. Department of Bioinformatics ; MD Anderson Cancer Center ; Houston ; TX ; USA
4. Department of Surgical Oncology ; MD Anderson Cancer Center ; Houston ; TX ; USA
5. Department of Investigational Cancer Therapeutics ; MD Anderson Cancer Center ; Houston ; TX ; USA
6. The Genome Institute ; Washington University School of Medicine ; St. Louis ; MO ; USA
7. Department of Medicine ; Washington University School of Medicine ; St. Louis ; MO ; USA
8. Graduate Program in Genes and Development ; Graduate School of Biomedical Sciences ; University of Texas Health Science Center ; Houston ; TX ; USA

刊名：Genome Medicine

出版年：2015

作者：Dominic Pinel (1) (3)
David Colatriano (1)
Heng Jiang (1) (4)
Hung Lee (2)
Vincent JJ Martin (1)

1. Department of Biology ; Centre for Structural and Functional Genomics ; Concordia University ; 7141 Sherbrooke Street West ; Montr茅al ; Qu茅bec ; H4B 1R6 ; Canada
3. Current address ; Energy Biosciences Institute ; University of California ; Berkeley ; Berkeley ; CA ; 94704 ; USA
4. Current address ; Crabtree Nutrition Laboratories ; McGill University Health Center ; Montreal ; Quebec ; H3A 1A1 ; Canada
2. School of Environmental Sciences ; University of Guelph ; Guelph ; Ontario ; N1G 2 W1 ; Canada

关键词：Evolutionary engineering ; Genome shuffling ; Reverse engineering ; Complex trait ; Tolerance ; Yeast

刊名：Biotechnology for Biofuels

出版年：2015

作者：Doori Park (1)
Je Won Jung (1)
Beom-Soon Choi (2)
Murukarthick Jayakodi (3)
Jeongsoo Lee (2)
Jongsung Lim (2)
Yeisoo Yu (4)
Yong-Soo Choi (5)
Myeong-Lyeol Lee (5)
Yoonseong Park (6)
Ik-Young Choi (2)
Tae-Jin Yang (3)
Owain R Edwards (7)
Gyoungju Nah (3)
Hyung Wook Kwon (1)

1. Biomodulation Major ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
2. National Instrumentation Center for Environmental Management ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-742 ; Republic of Korea
3. Department of Plant Science ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
4. Arizona Genomics Institute ; University of Arizona ; Tucson ; Arizona ; 85721 ; USA
5. National Institute of Agricultural Biotechnology ; Rural development Administration ; Suwon ; 441-707 ; Republic of Korea
6. Department of Entomology ; Kansas State University ; Manhattan ; Kansas ; USA
7. CSIRO Ecosystem Sciences ; Centre for Environment and Life Sciences ; Underwood Avenue ; Floreat ; WA ; 6014 ; Australia

关键词：Apis cerana ; Asian honey bee ; Genome ; Social insect ; Chemosensory receptors ; Honey bee immunity

刊名：BMC Genomics

出版年：2015

作者：Xiaoyi Gao (1)
Jianpeng Xu (1)
Joshua Starmer (2) (3) (4)

1. Department of Ophthalmology and Visual Sciences ; University of Illinois at Chicago ; Chicago ; IL ; 60612 ; USA
2. Department of Genetics ; University of North Carolina-Chapel Hill ; Chapel Hill ; NC ; 27599 ; USA
3. Carolina Center for Genome Sciences ; The University of North Carolina at Chapel Hill ; Chapel Hill ; NC ; 27599 ; USA
4. Lineberger Comprehensive Cancer Center ; The University of North Carolina at Chapel Hill ; Chapel Hill ; NC ; 27599 ; USA

关键词：Next generation sequencing ; Whole exome sequencing ; Variant calling ; Pipeline ; Automation

刊名：BMC Research Notes

出版年：2015

作者：Qingguo Wang (1)
Peilin Jia (1) (2)
Zhongming Zhao (1) (2) (3) (4)

1. Department of Biomedical Informatics ; Vanderbilt University School of Medicine ; Nashville ; TN ; 37203 ; USA
2. Center for Quantitative Sciences ; Vanderbilt University Medical Center ; Nashville ; TN ; 37232 ; USA
3. Department of Psychiatry ; Vanderbilt University School of Medicine ; Nashville ; TN ; 37232 ; USA
4. Department of Cancer Biology ; Vanderbilt University School of Medicine ; Nashville ; TN ; 37232 ; USA

刊名：Genome Medicine

出版年：2015

作者：Aakrosh Ratan (1) (3)
Thomas L Olson (2)
Thomas P Loughran Jr (2)
Webb Miller (1)

1. Center for Comparative Genomics and Bioinformatics ; Pennsylvania State University ; 506 ; Wartik Laboratory ; University Park ; PA ; 16802 ; USA
3. Department of Public Health Sciences and Center for Public Health Genomics ; University of Virginia ; Charlottesville ; VA ; 22908 ; USA
2. Department of Medicine ; Hematology and Oncology ; and the University of Virginia Cancer Center ; University of Virginia ; Charlottesville ; VA ; 22908 ; USA

关键词：Indels ; Variants ; Sequencing analysis

刊名：BMC Bioinformatics

出版年：2015

作者：Netha Ulahannan (1)
John M Greally (1)

1. Department of Genetics ; Albert Einstein College of Medicine ; Center for Epigenomics and Division of Computational Genetics ; 1301 Morris Park Avenue ; Bronx ; NY ; 10461 ; USA

关键词：DNA methylation ; 5 ; methylcytosine ; Epigenomic ; Assay ; CpG island ; Enhancer ; microarray

刊名：Epigenetics & Chromatin

出版年：2015