Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows

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Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows

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作者：Michael T. Krieger^a ; ^c ; ^{michael.krieger@risc-software.at" class="auth_mail" title="E-mail the corresponding author}Author Vitae ; Oscar Torreno^a ; ^bAuthor Vitae ; Oswaldo Trelles^bAuthor Vitae ; Dieter Kranzlmü ; ller^cAuthor Vitae
关键词：Bioinformatics ; Biomedicine ; Workflows ; Cloud computing ; Auto-scaling ; GridFTP
刊名：Future Generation Computer Systems
出版年：2017
出版时间：February 2017
年：2017
卷：67
期：Complete
页码：329-340
全文大小：1681 K

文摘

•: We describe a scalable full open source cloud stack covering IaaS, PaaS, and SaaS.
•: For high-throughput data transfers we integrate GridFTP with Galaxy.
•: We enable automatic scaling of cloud resources for Galaxy with dynamicTORQUE.
•: We present two use cases of bioinformatics and biomedical applications in the cloud.
•: Runtime of applications can be speeded up through efficient scaling or resources.

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