Genome-wide identification, classification and expression analysis of the PHD-finger protein family in Populus trichocarpa

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Genome-wide identification, classification and expression analysis of the PHD-finger protein family in Populus trichocarpa

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作者：Shengnan Wu^a ; ^b ; Min Wu^a ; Qing Dong^b ; Haiyang Jiang^b ; Ronghao Cai^b ; Yan Xiang^a ; ^b ;
关键词：PHD ; plant homeobox domain ; pI ; isoelectric point ; Mya ; million years ago ; CDS ; coding sequences ; HMM ; hidden Markov model ; NJ ; neighbor-joining ; At ; Arabidopsis thaliana ; Pt ; Populus trichocarpa ; GEO ; Gene Expression Omnibus ; NCBI ; National Center for Biotechnology Information
刊名：Gene
出版年：2016
出版时间：1 January 2016
年：2016
卷：575
期：1
页码：75-89
全文大小：4019 K

文摘

•: We identified 73 full-length PHD genes in the poplar genome.
•: We found 7 segmental duplication and 2 tandem duplication events in this family.
•: Ka/Ks analysis showed that most paralogous genes experienced purifying selection.
•: We analyzed the expression patterns of nine candidate PtPHD genes in response to stress.

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