Dissortativity and duplications in oral cancer

详细信息    查看全文

• 作者：Pramod Shinde ; Alok Yadav ; Aparna Rai ; Sarika Jalan
• 关键词：Statistical and Nonlinear Physics
• 刊名：The European Physical Journal B - Condensed Matter
• 出版年：2015
• 出版时间：August 2015
• 年：2015
• 卷：88
• 期：8
• 全文大小：256 KB
• 参考文献：1.World Health Organization, International Classification of Diseases 10th Revision, Accessed on Jan. 20, 2015 (2010)
  2.Cancer Research UK. Oral cancer incidence statistics, http://鈥媤ww.鈥媍ancerresearchuk鈥?鈥媜rg/鈥媍ancer-info/峥ncerstats/鈥媡ypes/鈥媜ral/鈥媔ncidence/鈥媢k-oral-cancer- incidence-statistics , Accessed on Jan. 20, 2015 (2012)
  3. K.R. Coelho, J. Cancer Epidemiol. 2012, 701932 (2012) View Article
  4. R. Sankaranarayanan, K. Ramadas, G. Thomas, Lancet 365, 1927 (2005) View Article
  5.Z.U. Khan, Webmed Central Cancer 3, WMC003626 (2012)
  6. R. Dikshit, P.C. Gupta, Lancet 379, 1807 (2005) View Article
  7.J. Penninger, D. Schramek, U.S. Patent Application 13/825, 655 (2011), and references therein
  8. S. Di Franco, P. Mancuso, A. Benfante, M. Spina, F. Iovino, F. Dieli, M. Todaro, Cancers 3, 1957 (2011)View Article
  9. B. Coiffier, J. Clin. Oncol. Res. 23, 6387 (2005) View Article
  10.National Institute of Cancer. http://鈥媤ww.鈥媍ancer.鈥媑ov/鈥媍ancertopics/鈥媎ruginfo/鈥媎rug-page-index , Accessed on 26th January (2015)
  11. G. Calixto, J. Bernegossi, B. Fonseca-Santos, M. Chorilli, Int. J. Nanomedicine 9, 3719 (2014)View Article
  12. S. Hu, M. Arellano, P. Boontheung, J. Wang, H. Zhou, J. Jiang, D.T. Wong, Clin. Cancer Res. 14, 6246 (2008) View Article
  13. N.S. Gadewal, S.M. Zingde, Bioinformation 6, 169 (2011)View Article
  14. R. Albert, A.-L. Barab谩si, Rev. Mod. Phys. 74, 47 (2002)ADS View Article
  15. A.-L. Barabasi, Z.N. Oltvai, Nat. Rev. Genet. 5, 2 (2004)View Article
  16. K.I. Goh et al., Proc. Natl. Acad. Sci. USA 104, 21 (2007)View Article
  17. J.J. Hornberg, F.J. Bruggeman, H.V. Westerhoff, J. Lankelma, Biosystems 83, 81 (2006)View Article
  18. S. Mitra, S. Das, S. Das, S. Ghosal, Oral Oncol. 48, 2 (2012)View Article
  19. C.H. Wu, R. Apweiler, A. Bairoch, Nucleic Acids Res. 34, PMC1347523 (2006)View Article
  20. M. Molloy, B. Reed, Random Struct. Algorithms 6, 161 (1995)MathSciNet View Article
  21. M. Newman, Comput. Phys. Commun. 147, 40 (2002)ADS View Article
  22. R. Albert, H. Jeong, A.L. Barabasi, Nature 401, 130 (1999) ADS View Article
  23. M.T. Rivera, S.B. Soderstrom, B. Uzzi, Ann. Rev. Sociol. 36, 91 (2010)View Article
  24. A. Yadav, S. Jalan, Chaos 25, 043110 (2015) ADS View Article
  25. H. Kitano, Nat. Rev. Genet. 5, 826 (2004), and references thereinView Article
  26. I. Ispolatov, P.L. Krapivsky, A. Yuryev, Phys. Rev. E 71, 1 (2005)View Article
  27.P.V. Meighem, Graph Spectra for Complex Networks (Cambridge University Press, Cambridge, 2011)
  28.G.H. Golub, C.F. Van Loan, in Matrix computations (JHU Press, 2012), Vol. 3
  29. D.J. Watts, S.H. Strogatz, Nature 393, 440 (1998) ADS View Article
  30. L.M. Iakoucheva, C.J. Brown, J.D. Lawson, Z. Obradovi, A.K. Dunker, J. Mol. Biol. 323, 573 (2002) View Article
  31.A.L. Barabasi, Linked: The New Science of Networks (Perseus Publishing, Cambridge, 2002)
  32. A. Clauset, C.R. Shalizi, M.E.J. Newman, SIAM Rev. 4, 51 (2009)MathSciNet
  33. M. Hsing, Nat. Biotechnol. 30, 842 (2000)
  34. H.M. Berman et al., Nucleic Acids Res. 28, 235 (2000)ADS View Article
  35. P.F. Jonsson, P.A. Bates, Bioinformatics 22, 18 (2006)View Article
  36. B.M. Kessler, Curr. Opin. Chem. Biol. 17, 59 (2013)View Article
  37. K. Haglund, I. Dikic, Protein Degrad. 4, 1 (2007)View Article
  38. Th. Shpitzer, G. Bahar, R. Feinmesser, R.M. Nagler, J. Cancer Res. Clin. Oncol. 133, 613 (2007) View Article
  39. R. Nagler et al., Biophys. Acta 1802, 454 (2010)
  40. S. Mukherjee, S.K. Das, Curr. Mol. Med. 12, 443 (2012)
  41. A. Force, M. Lynch, F.B. Pickett, A. Amores, Y.L. Yan, J. Postlethwait, Genetics 151, 1531 (1999)
  42. M.E.J. Newman, S.H. Strogatz, D.J. Watts, Phys. Rev. E 64, 026118 (2001) ADS View Article
  43. M. de Aguiar, Y. Bar-Yam, Phys. Rev. E 71, 016106 (2005) ADS View Article
  44. J. Zhang, Trends Ecol. Evol. 18, 292 (2003)View Article
  45. M.A. Nowak, M.C. Boerlijst, J. Cooke, J.M. Smith, Nature 388, 167 (1997) ADS View Article
  46. S.A. Frank, Curr. Biol. 23, R343 (2013) View Article
  47. S. Richardson, R. Sandra, C. Salvador-Palomeque, G.J. Faulkner, BioEssays 36, 475 (2014)View Article
  48. J.A. Bailey, Z. Gu, R.A. Clark, K. Reinert, R.V. Samonte, S. Schwartz, E.E. Eichler, Science 297, 1003 (2002) ADS View Article
  49. P. Creixell, E.M. Schoof, J.T. Erler, R. Linding, Nat. Biotechnol. 30, 842 (2012)View Article
  50. I.J. Farkas, I. Derenyi, A.-L. Barab谩si, T. Vicsek, Phys. Rev. E 64, 026704 (2001) ADS View Article
  51. G. Kar, A. Gursoy, O. Keskin, PLoS Comput. Biol. 5, e1000601 (2009) ADS View Article
  52. M.E.J. Newman, J. Park, Phys. Rev. E 68, 036122 (2003) ADS View Article
  53. D. Lusseau, M.E.J. Newman, Proc. R. Soc. London B 271, S477 (2004) View Article
  54. D.A. Pechenick, J.L. Payne, J.H. Moore, PLoS Comput. Biol. 10, e1003780 (2014) ADS View Article
  55. M. Dean, T. Fojo, S. Bates, Nat. Rev. Cancer 5, 275 (2005)View Article
  56. M.M. Gottesman, Ann. Rev. Med. 53, 615 (2002)View Article
  57. S. Patel, J. Shah, CA Cancer J. Clin. 55, 242 (2005)View Article
  58. P. Hansen, B. Floderus, K. Frederiksen, C. Johansen, Cancer 103, 1082 (2005) View Article
  59. Q. Tian, N. Price, L. Hood, J. Int. Med. 271, 111 (2012) View Article
  
• 作者单位：Pramod Shinde (1)
  Alok Yadav (2)
  Aparna Rai (1)
  Sarika Jalan (1) (2)
  
  1. Centre for Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, 452017, Indore, India
  2. Complex Systems Lab, Discipline of Physics, Indian Institute of Technology Indore, 452017, Indore, India
  
• 刊物类别：Physics and Astronomy
• 刊物主题：Physics
  Condensed Matter
  Physics
  Complexity
  Fluids
  Solid State Physics and Spectroscopy
  Superconductivity, Superfluidity and Quantum Fluids
  
• 出版者：Springer Berlin / Heidelberg
• ISSN：1434-6036

文摘

More than 300 000 new cases worldwide are being diagnosed with oral cancer annually. Complexity of oral cancer renders designing drug targets very difficult. We analyse protein-protein interaction network for the normal and oral cancer tissue and detect crucial changes in the structural properties of the networks in terms of the interactions of the hub proteins and the degree-degree correlations. Further analysis of the spectra of both the networks, while exhibiting universal statistical behaviour, manifest distinction in terms of the zero degeneracy, providing insight to the complexity of the underlying system.