A multiplexed set of microsatellite markers for discriminating Acacia mangium, A. auriculiformis, and their hybrid

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A multiplexed set of microsatellite markers for discriminating Acacia mangium, A. auriculiformis, and their hybrid

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作者：Son Le ; Wickneswari Ratnam ; Christopher E. Harwood…
关键词：Population genetics ; Breeding population ; Hybrid discrimination ; Microsatellite
刊名：Tree Genetics & Genomes
出版年：2016
出版时间：April 2016
年：2016
卷：12
期：2
全文大小：558 KB
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作者单位：Son Le (1) (4)
Wickneswari Ratnam (2)
Christopher E. Harwood (1) (3)
Matthew J. Larcombe (1)
Rod A. Griffin (1)
Anthony Koutoulis (1)
Jane L. Harbard (1)
Koh Sin Cyer (2)
Liew Wai Yee (2)
Thinh Huy Ha (4)
René E. Vaillancourt (1)

1. School of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, TAS, 7001, Australia
4. Vietnamese Academy of Forest Sciences, Chinhthang, Bactuliem, Hanoi, Vietnam
2. Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, 43600, Malaysia
3. CSIRO Land and Water, Private Bag 12, Hobart, TAS, 7001, Australia
刊物主题：Forestry; Plant Genetics & Genomics; Plant Breeding/Biotechnology; Tree Biology; Biotechnology;
出版者：Springer Berlin Heidelberg
ISSN：1614-2950

文摘

In order to assist breeding and gene pool conservation in tropical Acacias, we aimed to develop a set of multipurpose SSR markers for use in both Acacia mangium and A. auriculiformis. A total of 51 SSR markers (developed in A. mangium and natural A. mangium x A. auriculiformis hybrid) were tested. A final set of 16 well-performing SSR markers were identified, six of which were species diagnostic. The markers were optimized for assay in four multiplex mixes and used to genotype range-wide samples of A. mangium, A. auriculiformis, and putative F₁ hybrids. Simulation analysis was used to investigate the power of the markers for identifying the pure species and their F₁, F₂, and backcross hybrids. The six species diagnostic markers were particularly powerful for detecting F₁ hybrids from pure species but could also discriminate the pure species from F₂ and backcross progenies in most cases (97 %). STRUCTURE analysis using all 16 markers was likewise able to distinguish these cross types and pure species sets. Both sets of markers had difficulties in distinguishing F₂ and backcross progenies. However, identifying F₁ from pure species is the current primary concern in countries where these species are planted. The SSR marker set also has direct application in DNA profiling (probability of identity = 4.1 × 10−13), breeding system analysis, and population genetics.