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Association mapping of agronomic and quality traits in USDA pea single-plant collection
- 作者:Peng Cheng ; William Holdsworth ; Yu Ma ; Clarice J. Coyne…
- 关键词:Association mapping ; Pisum sativum ; Single nucleotide polymorphism ; Marker ; assisted selection ; Pea single ; plant collection
- 刊名:Molecular Breeding
- 出版年:2015
- 出版时间:February 2015
- 年:2015
- 卷:35
- 期:2
- 全文大小:318 KB
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William Holdsworth (3) Yu Ma (2) Clarice J. Coyne (5) Michael Mazourek (3) Michael A. Grusak (4) Sam Fuchs (5) Rebecca J. McGee (6)
1. Department of Crop and Soil Sciences, Washington State University, Pullman, WA, 99164, USA 3. Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY, 14850, USA 2. Department of Horticulture, Washington State University, Pullman, WA, 99164, USA 5. US Department of Agriculture, Agricultural Research Service, Western Regional Plant Introduction Station, Pullman, WA, 99164, USA 4. Department of Pediatrics, USDA/ARS Children’s Nutrition Research Center, Baylor College of Medicine, 1100 Bates Street, Houston, TX, 77030, USA 6. US Department of Agriculture, Agricultural Research Service, Grain Legume Genetics and Physiology Research Unit, Pullman, WA, 99164, USA
- 刊物类别:Biomedical and Life Sciences
- 刊物主题:Life Sciences
Plant Sciences
- 出版者:Springer Netherlands
- ISSN:1572-9788
文摘
Association mapping is an efficient approach for the identification of the molecular basis of agronomic traits in crop plants. For this purpose in pea (Pisum sativum L.), we genotyped and phenotyped individual lines of the single-plant-derived core collection of the USDA pea collection including accessions from 330 landraces and cultivars of Pisum sativum subsp. sativum var. sativum, 28 P. sativum subsp. elatius var. elatius, 16 P. sativum subsp. sativum var. arvense, four P. sativum subsp. elatius var. pumilio, three P. abyssinicum, two P. fulvum, and one P. sativum subsp. transcaucasicum. These 384 accessions were collected or donated from a total of 64 countries. The accessions were genotyped with 256 informative SNPs using a primer extension chemistry and matrix-assisted laser desorption/ionization (MALDI–TOF) mass spectrometry assay. Genetic structure analysis showed that the collection was structured into two main groups, corresponding roughly to the cultivated types/landraces and the more primitive form species and subspecies, with some intermediates. Linkage disequilibrium of pairwise loci and population structure of the collection were analyzed, and an association analysis between SNP genotypes and 25 valuable traits such as disease resistance, seed type/color, flower color, seed low molecular weight carbohydrate concentration, and seed mineral nutrient concentration was performed using a mixed linear model. A total of 71 marker–trait associations were detected as significant with 1-4 markers per trait based on the false discovery rate (FDR?
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