Understanding the direction of evolution in Burkholderia glumae through comparative genomics

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• 作者：Hyun-Hee Lee ; Jungwook Park ; Jinnyun Kim ; Inmyoung Park ; Young-Su Seo
• 关键词：Burkholderia glumae ; Plant pathogen ; Comparative genomics ; Virulence factor
• 刊名：Current Genetics
• 出版年：2016
• 出版时间：February 2016
• 年：2016
• 卷：62
• 期：1
• 页码：115-123
• 全文大小：3,289 KB
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• 作者单位：Hyun-Hee Lee (1)
  Jungwook Park (1)
  Jinnyun Kim (1)
  Inmyoung Park (1)
  Young-Su Seo (1)
  
  1. Department of Microbiology, Pusan National University, Pusan, 609-735, Republic of Korea
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Microbial Genetics and Genomics
  Microbiology
  Biochemistry
  Cell Biology
  Plant Sciences
  Proteomics
  
• 出版者：Springer Berlin / Heidelberg
• ISSN：1432-0983

文摘

Members of the genus Burkholderia occupy remarkably diverse niches, with genome sizes ranging from ~3.75 to 11.29 Mbp. The genome of Burkholderia glumae ranges in size from ~5.81 to 7.89 Mbp. Unlike other plant pathogenic bacteria, B. glumae can infect a wide range of monocot and dicot plants. Comparative genome analysis of B. glumae strains can provide insight into genome variation as well as differential features of whole metabolism or pathways between multiple strains of B. glumae infecting the same host. Comparative analysis of complete genomes among B. glumae BGR1, B. glumae LMG 2196, and B. glumae PG1 revealed the largest departmentalization of genes onto separate replicons in B. glumae BGR1 and considerable downsizing of the genome in B. glumae LMG 2196. In addition, the presence of large-scale evolutionary events such as rearrangement and inversion and the development of highly specialized systems were found to be related to virulence-associated features in the three B. glumae strains. This connection may explain why this bacterium broadens its host range and reinforces its interaction with hosts. Keywords Burkholderia glumae Plant pathogen Comparative genomics Virulence factor