Underlying genetic variation in the response of cultivated and wild soybean to enhanced ultraviolet-B radiation

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• 作者：Kyung Do Kim ; Min Young Yun ; Jin Hee Shin ; Yang Jae Kang ; Moon Young Kim…
• 关键词：Glycine max ; Glycine soja ; Single nucleotide polymorphism ; Soybean ; Ultraviolet ; B radiation
• 刊名：Euphytica
• 出版年：2015
• 出版时间：March 2015
• 年：2015
• 卷：202
• 期：2
• 页码：207-217
• 全文大小：269 KB
• 参考文献：1. Ambler JE, Krizek DT, Semeniuk P (1975) Influence of UV-B radiation on early seedling growth and translocation of ⁶⁵Zn from cotyledons in cotton. Physiol Plantarum 34:177-81 CrossRef
  2. Au KG, Welsh K, Modrich P (1992) Initiation of methyl-directed mismatch repair. J Biol Chem 267:12142-2148
  3. Austin J, Wilson RJ (2006) Ensemble simulations of the decline and recovery of stratospheric ozone. J Geophys Res-Atmos. doi:10.1029/2005jd006907
  4. Bieza K, Lois R (2001) An Arabidopsis mutant tolerant to lethal ultraviolet-B levels shows constitutively elevated accumulation of flavonoids and other phenolics. Plant Physiol 126:1105-115. doi:10.1104/pp.126.3.1105 CrossRef
  5. Biggs RH, Kossuth SV, Teramura AH (1981) Response of 19 cultivars of soybeans to ultraviolet-B irradiance. Physiol Plantarum 53:19-6 CrossRef
  6. Britt AB (1996) DNA damage and repair in plants. Annu Rev Plant Phys 47:75-00 CrossRef
  7. Chang DJ, Cimprich KA (2009) DNA damage tolerance: when it’s OK to make mistakes. Nat Chem Biol 5:82-0. doi:10.1038/nchembio.139 CrossRef
  8. Culligan KM, Hays JB (2000) Arabidopsis / MutS Homologs-em class="a-plus-plus">AtMSH2, / AtMSH3, / AtMSH6, and a novel / AtMSH7—form three distinct protein heterodimers with different specificities for mismatched DNA. Plant Cell 12:991-002. doi:10.1105/tpc.12.6.991
  9. Dai QJ, Peng SB, Chavez AQ, Vergara BS (1994) Intraspecific responses of 188 rice cultivars to enhanced UVB radiation. Environ Exp Bot 34:433-42 CrossRef
  10. Dsurney SJ, Tschaplinski TJ, Edwards NT, Shugart LR (1993) Biological responses of 2 soybean cultivars exposed to enhanced UVB radiation. Environ Exp Bot 33:347-56 CrossRef
  11. Fehr WR, Caviness CE (1977) Stages of soybean development. Iowa State University of Science and Technology Ames, Iowa
  12. Feng WY, Hays JB (1995) DNA structures generated during recombination initiated by mismatch repair of UV-irradiated nonreplicating phage DNA in / Escherichia coli: requirements for helicase, exonucleases, and RecF and RecBCD functions. Genetics 140:1175-186
  13. Feng HY, An LZ, Chen T, Qiang WY, Xu SJ, Zhang MX, Wang XL, Cheng GD (2003) The effect of enhanced ultraviolet-B radiation on growth, photosynthesis and stable carbon isotope composition (d¹³C) of two soybean cultivars ( / Glycine max) under field conditions. Environ Exp Bot 49:1- CrossRef
  14. Frohnmeyer H, Staiger D (2003) Ultraviolet-B radiation-mediated responses in plants. Balancing damage and protection. Plant Physiol 133:1420-428. doi:10.1104/pp.103.030049 CrossRef
  15. Ghosal G, Chen J (2013) DNA damage tolerance: a double-edged sword guarding the genome. Transl Cancer Res 2:107-29. doi:10.3978/j.issn.2218-676X.2013.04.01
  16. Gonzalez R, Mepsted R, Wellburn AR, Paul ND (1998) Non-photosynthetic mechanisms of growth reduction in pea ( / Pisum sativum L.) exposed to UV-B radiation. Plant Cell Environ 21:23-2 CrossRef
  17. Harfe BD, Jinks-Robertson S (2000) DNA mismatch repair and genetic instability. Ann Rev Gen 34:359-99. doi:10.1146/annurev.genet.34.1.359 CrossRef
  18. Hidema J, Teranishi M, Iwamatsu Y, Hirouchi T, Ueda T, Sato T, Burr B, Sutherland BM, Yamamoto K, Kumagai T (2005) Spontaneously occurring mutations in the cyclobutane
• 作者单位：Kyung Do Kim (1) (3)
  Min Young Yun (1)
  Jin Hee Shin (1)
  Yang Jae Kang (1)
  Moon Young Kim (1)
  Suk-Ha Lee (1) (2)
  
  1. Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Korea
  3. Center for Applied Genetic Technologies, University of Georgia, 111 Riverbend Rd., Athens, GA, 30602, USA
  2. Plant Genomic and Breeding Research Institute, Seoul National University, Seoul, 151-921, Korea
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Physiology
  Plant Sciences
  Ecology
  
• 出版者：Springer Netherlands
• ISSN：1573-5060

文摘

Reductions in stratospheric ozone have resulted in increased levels of ultraviolet-B (UV-B, 280-15?nm) radiation reaching the earth’s surface. UV-B radiation can damage plant DNA and photosynthetic machinery. Therefore, enhanced UV-B levels would seriously affect crop production in several regions of the world. Here, we provide a comprehensive report of intraspecific variability in the response of soybean to UV-B radiation and the genetic variation underlying UV-B resistance. We evaluated 140 genotypes, including 94 Glycine max and 46 G. soja accessions, for their sensitivity to supplemental UV-B radiation. Differences in responses to elevated UV-B levels, such as changes in leaf area and aerial biomass, were observed among soybean genotypes, supporting the notion that there is intraspecific variability in this response in G. soja as well as G. max. To explore how genetic variation contributes to differences in UV-B resistance, we sequenced the most UV-B resistant (IT162669) and sensitive (Cheongjakong 3) genotypes at the whole-genome level. Based on their homology and functional annotation, 137 genes were determined to be “UV-B-related genes-in soybean, harboring almost 100 high-confidence single nucleotide polymorphisms between the two genotypes. Interestingly, we identified four genes with non-synonymous mutations that are related to plant protection mechanisms, such as the UV-protection, DNA damage repair and DNA damage tolerance pathways. Our results provide valuable information about UV-B-resistant soybean genotypes, UV-B-related soybean genes, and sequence variations between resistant and sensitive genotypes.