Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients
详细信息    查看全文
  • 作者:Melissa E. Bell ; Brent A. Lasker ; Hans-Peter Klenk…
  • 关键词:Kroppenstedtia species ; Kroppenstedtia pulmonis ; Kroppenstedtia sanguinis ; Polyphasic taxonomy ; 16S rRNA gene ; Thermoactinomycetes
  • 刊名:Antonie van Leeuwenhoek
  • 出版年:2016
  • 出版时间:May 2016
  • 年:2016
  • 卷:109
  • 期:5
  • 页码:603-610
  • 全文大小:487 KB
  • 参考文献:Addou AN, Schumann P, Spröer C, Hacene H, Cayol JL, Fardeau ML (2012) Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake. Int J Syst Evol Microbiol 62:1491–1498CrossRef PubMed
    Barker AP, Simmons KE, Cohen S, Slechta ES, Fisher MA, Schlaberg R (2012) Isolation and identification of Kroppenstedtia eburnea isolates from multiple patient samples. J Clin Microbiol 50:3391–3394CrossRef PubMed PubMedCentral
    Berd D (1973) Laboratory identification of clinically important aerobic actinomycetes. Appl Microbiol 25:665–681PubMed PubMedCentral
    Buss SN, Cole JA, Hannett GE, Nazarian EJ, Nazarian L, Coorevits A, Van Landschoot A, De Vos P, Schumann P, Musser KA, Wolfgang WJ (2013) Hazenella coriacea gen. nov., sp. nov., isolated from clinical specimens. Int J Syst Evol Microbiol 63:4087–4093CrossRef PubMed
    Cashion P, Hodler-Franklin MA, McCully J, Franklin M (1977) A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81:461–466CrossRef PubMed
    Clinical and Laboratory Standards Institute (2003) Susceptibility testing of mycobacteria, nocardiae, and other aerobic actinomycetes; approved standard M24-A. National Committee for Clinical Laboratory Standards, Wayne
    Clinical and Laboratory Standards Institute (2011) Susceptibility testing of mycobacteria, nocardiae, and other aerobic actinomycetes; approved standards M24-A2. Clinical Laboratory Standards Institute, Wayne
    Clinical and Laboratory Standards Institute (2015) Performance standards for antimicrobial susceptibility testing; twenty-fifth information supplement M100-S25. National Committee for Clinical Laboratory Standards, Wayne
    Conville PS, Witebsky FG (2007) Nocardia, Rhodococcus, Gordonia, Actinomadura, Streptomyces, and other aerobic actinomycetes. In: Murray PR, Baron EJ, Jorgensen JH, Landry ML, Phaller MA (eds) Manual of clinical microbiology, 9th edn. American Society for Microbiology, Washington, DC, pp 515–542
    Conville PS, Brown JM, Steigerwalt AG, Brown-Elliott BA, Witebsky FG (2008) Nocardia wallacei sp. nov., and Nocardia blaklockiae sp. nov., human pathogens and members of the “Nocardia transvalensis complex”. J Clin Microbiol 46:1178–1184CrossRef PubMed PubMedCentral
    De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142CrossRef PubMed
    Felsenstein J (1989) PHYLIP—phylogeny inference package (version 3.2). Cladistics 5:164–166
    Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192CrossRef PubMed
    Kim M, Kim T, Ri S, Jiang F, Chang X, Liu Y, Ren L, Qiu X, Deng S, Fang C, Zheng C, Peng F (2015) Risungbinella pyongyangensis gen. nov., sp. nov., a mesophilic strain of the family Thermoactinomycetaceae isolated from agricultural soil sample. Int J Syst Evol Microbiol. doi:10.​1099/​ijs.​0.​000328
    Klatte S, Kroppenstedt RM, Rainey FA (1994) Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus species. Syst Appl Microbiol 17:355–360CrossRef
    Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359–2367CrossRef
    Kroppenstedt RM (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics, no. 20. SAB Technical Series. Academic Press, London, pp. 173–199
    Lasker BA, Moser BD, Brown JM (2011) Gordonia. In: Liu D (ed) Molecular detection of human bacterial pathogens. CRC Taylor & Francis Group, Boca Raton, pp 95–110CrossRef
    Lechevalier MP, Lechevalier HA (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435–443CrossRef
    Matsuo Y, Katsuta A, Matsuda S, Shizurti Y, Yokota A, Kasai H (2006) Mechercharimyces mesophilus gen. nov. and sp. nov. Mechercharimyces asporophorigenens sp. nov., antitumor substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 56:2837–2842CrossRef PubMed
    Meier-Kolthoff JP, Göker M, Spröer C, Klenk HP (2013) When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195:413–418CrossRef PubMed
    Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167CrossRef
    Minnikin DE, O’Donnell AG, Goodfellow G, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An intergrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241CrossRef
    Rhuland LE, Work E, Denman RF, Hoare DS (1955) The behavior of the isomers of α, ε-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77:4844–4846CrossRef
    Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20:16
    Staneck JL, Roberts GD (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231PubMed PubMedCentral
    von Jan M, Riegger N, Pötter G, Schumann P, Verbarg S, Spröer C, Rohde M, Lauer B, Labeda DP, Klenk HP (2011) Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo, 2006 emend. Yassin et al. 2009. Int J Syst Evol Microbiol 61:2304–2310CrossRef
    Weyant RS, Moss CW, Weaver RE, Hollis DG, Jordan JG, Cook EC, Daneshvar MI (1996) Identification of Unusual Pathogenic Gram-Negative and Facultatively Anaerobic Bacteria, 2nd edn. Williams and Wilkins, Baltimore
    Yang G, Qin D, Wu C, Yuan Y, Zhou S, Cai Y (2013) Kroppenstedtia guangzhouensis sp. nov., a thermoactinomycete isolated from soil. Int J Syst Evol Microbiol 61:2304–2310
    Yassin AF, Rainey FA, Brzezinka H, Burghardt J, Lee HJ, Schaal KP (1995) Tsukamurella inchonensis sp. nov. Int J Syst Bacteriol 45:522–527CrossRef PubMed
    Yassin AF, Hupfer H, Klenk HP, Siering C (2009) Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006. Int J Syst Bacteriol 59:454–459CrossRef
    Yu TT, Zhang BH, Yao JC, Tang SK, Zhou EM, Yin YR, Wei DQ, Ming H, Li WJ (2012) Lihuaxuella thermophila gen. nov., sp. nov., isolated from a geothermal soil sample in Tengchong, Yunnan, south-west China. Antonie Van Leeuwenhoek 102:711–718CrossRef PubMed
    Zhang Y, Li J, Tian X, Zhang S (2015) Marinithermofilum abyssi gen. nov., sp. nov. and Desmospora profundinema sp. nov. isolated from a deep-sea sediment, and emended description of the genus Desmospora Yassin et al. 2009. Int J Syst Evol Microbiol. doi:10.​1099/​ijs.​0.​000314
    Zhou EM, Yu TT, Liu L, Ming H, Yin YR, Dong L, Tseng M, Nie GX, Li WJ (2014) Geothermomicrobium terrae gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 64:2998–3004CrossRef PubMed
  • 作者单位:Melissa E. Bell (1)
    Brent A. Lasker (2)
    Hans-Peter Klenk (3)
    Lesley Hoyles (5)
    Catherine Spröer (4)
    Peter Schumann (4)
    June M. Brown (2)

    1. Centers for Disease Control and Prevention, Building 17, Room 2209, Mailstop D-11, 1600 Clifton Road, Atlanta, GA, 30333, USA
    2. Bacterial Special Pathogens Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Disease, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA
    3. Head of School, School of Biology, Newcastle University, Ridley Building 2, Newcastle upon Tyne, NE1 7RU, UK
    5. Department of Biomedical Sciences, Faculty of Science & Technology, University of Westminster, 115 New Cavendish Street, London, W1W 6UW, UK
    4. Leibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, 38124, Brunswick, Germany
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Medical Microbiology
    Plant Sciences
    Soil Science and Conservation
  • 出版者:Springer Netherlands
  • ISSN:1572-9699
文摘
Three human clinical strains (W9323T, X0209T and X0394) isolated from a lung biopsy, blood and cerebral spinal fluid, respectively, were characterised using a polyphasic taxonomic approach. Comparative analysis of the 16S rRNA gene sequences showed the three strains belong to two novel branches within the genus Kroppenstedtia: 16S rRNA gene sequence analysis of W9323T showed close sequence similarity to Kroppenstedtia eburnea JFMB-ATET (95.3 %), Kroppenstedtia guangzhouensis GD02T (94.7 %) and strain X0209T (94.6 %); sequence analysis of strain X0209T showed close sequence similarity to K. eburnea JFMB-ATET (96.4 %) and K. guangzhouensis GD02T (96.0 %). Strains X0209T and X0394 were 99.9 % similar to each other by 16S rRNA gene sequence analysis. The DNA–DNA relatedness was 94.6 %, confirming that X0209T and X0394 belong to the same species. Chemotaxonomic data for strains W9323T and X0209T were consistent with those described for the members of the genus Kroppenstedtia: the peptidoglycan was found to contain LL-diaminopimelic acid; the major cellular fatty acids were identified as iso-C15 and anteiso-C15; and the major menaquinone was identified as MK-7. Differences in endospore morphology, carbon source utilisation profiles, and cell wall sugar patterns of strains W9323T and X0209T, supported by phylogenetic analysis, enabled us to conclude that the strains each represent a new species within the genus Kroppenstedtia, for which the names Kroppenstedtia pulmonis sp. nov. (type strain W9323T = DSM 45752T = CCUG 68107T) and Kroppenstedtia sanguinis sp. nov. (type strain X0209T = DSM 45749T = CCUG 38657T) are proposed.
NGLC 2004-2010.National Geological Library of China All Rights Reserved.
Add:29 Xueyuan Rd,Haidian District,Beijing,PRC. Mail Add: 8324 mailbox 100083
For exchange or info please contact us via email.