| |
A generalized perturbation approach for exploring stock recruitment relationships
- 作者:Justin D. Yeakel (1) (2)
Marc Mangel (3) (4)
1. Center for Stock Assessment Research and Department of Ecology and Evolutionary Biology ; University of California Santa Cruz ; Santa Cruz ; CA ; 95064 ; USA 2. Santa Fe Institute ; Santa Fe ; NM ; 87501 ; USA 3. Center for Stock Assessment Research and Department of Applied Mathematics and Statistics ; University of California Santa Cruz ; Santa Cruz ; CA ; 95064 ; USA 4. Department of Biology ; University of Bergen ; Bergen ; 5020 ; Norway
- 关键词:Compensatory dynamics ; Generalized modeling ; Stock ; recruitment relationships ; Shepherd function ; Neimark ; Sacker bifurcation
- 刊名:Theoretical Ecology
- 出版年:2015
- 出版时间:February 2015
- 年:2015
- 卷:8
- 期:1
- 页码:1-13
- 全文大小:949 KB
- 参考文献:1. Auger P, Poggiale JC (1996) Emergence of population growth models: Fast migration and slow growth. J Theor Biol 182(2):99鈥?08 CrossRef
2. Beverton RJH, Holt SJ (1957) On the dynamics of exploited fish populations. Springer, New York 3. Brooks EN, Powers JE (2007) Generalized compensation in stock-recruit functions: Properties and implications for management. ICES J Mar Sci 64(3):413鈥?24 CrossRef 4. Calder III WA (1996) Size, function, and life history. Courier Dover Publications, Cambridge 5. Cushing DH (1973) The dependence of recruitment on parent stock. J Fish Res Bd Can 30:1965鈥?976 CrossRef 6. Cushing DH (1988) The problems of stock and recruitment. In: Fish population dynamics: the implications for management. Wiley, New York 7. Dirac PAM (1958) The principles of quantum mechanics. Clarendon Press, Oxford 8. Dorner B, Peterman RM, Haeseker SL (2008) Historical trends in productivity of 120 Pacific pink, chum, and sockeye salmon stocks reconstructed by using a Kalman filter. Can J Fish Aquat Sci 65(9):1842鈥?866 CrossRef 9. Fell DA (1992) Metabolic control analysis: a survey of its theoretical and experimental development. Biochem J 286(Pt 2):313鈥?30 10. Fell DA, Sauro HM (1985) Metabolic control and its analysis. Eur J Biochem 148(3):555鈥?61 CrossRef 11. Feynman R (1948) Space-time approach to non-relativistic quantum mechanics. Rev Mod Phys 20(2):367鈥?87 CrossRef 12. Gross T, Feudel U (2006) Generalized models as a universal approach to the analysis of nonlinear dynamical systems. Phys Rev E 73(1 Pt 2)016:205 13. Gross T, Rudolf L, Levin SA, Dieckmann U (2009) Generalized models reveal stabilizing factors in food webs. Science 325(5941):747鈥?50 CrossRef 14. Guckenheimer J, Holmes P (1983) Nonlinear oscillations, dynamical systems and bifurcations of vector fields. Springer, New York CrossRef 15. Guill C, Drossel B, Just W, Carmack E (2011a) A three-species model explaining cyclic dominance of Pacific salmon. J Theor Biol 276(1):16鈥?1 CrossRef 16. Guill C, Reichardt B, Drossel B, Just W (2011b) Coexisting patterns of population oscillations: the degenerate Neimark-Sacker bifurcation as a generic mechanism. Phys Rev E 83(2):021,910 CrossRef 17. Gulland JA (1988) The analysis of data and development of models. In: Fish population dynamics: the implications for management. Wiley, New York 18. Hilborn R, Mangel M (1997) The ecological detective: confronting models with data. Princeton University Press, Princeton 19. Horvitz C, Schemske DW, Caswell H (1997) The relative 鈥渋mportance鈥?of life-history stages to population growth: prospective and retrospective analyses. In: Structured-population models in marine, terrestrial, and freshwater systems. Chapman and Hall, New York, pp 247鈥?71 CrossRef 20. Johnson DW, Grorud-Colvert K, Sponaugle S, Semmens BX (2014) Phenotypic variation and selective mortality as major drivers of recruitment variability in fishes. Ecol Lett Early edition 21. Kleiber P, Argue AW, Kearney RE (1987) Assessment of Pacific Skipjack Tuna (Katsuwonus pelamis) resources by estimating standing stock and components of population turnover from tagging data. Can J Fish Aquat Sci 44(6):1122鈥?134 CrossRef 22. Krkosek M, Hilborn R, Peterman RM, Quinn TP (2011) Cycles, stochasticity and density dependence in pink salmon population dynamics. Proc Roy Soc B 278(1714):2060鈥?068 CrossRef 23. Kuehn C, Siegmund S, Gross T (2013) Dynamical analysis of evolution equations in generalized models. IMA J Appl Math 78(5):1051鈥?077 CrossRef 24. Kuznetsov Y (1998) Elements of applied bifurcation theory. Springer, New York 25. MacCall AD (2002) Use of known-biomass production models to determine productivity of west coast groundfish stocks. N Am J Fish Manage 22(1):272鈥?79 CrossRef 26. Mangel M (2006a) An introduction to some of the problems of sustainable fisheries. In: The theoretical biologist鈥檚 toolbox: Quantitative methods for ecology and evolutionary biology. Cambridge University Press, Cambridge, pp 1鈥?8 CrossRef 27. Mangel M (2006b) The theoretical biologist鈥檚 toolbox: Quantitative methods for ecology and evolutionary biology. Cambridge University Press, Cambridge CrossRef 28. Mangel M, Marinovic B, Pomeroy C, Croll D (2002) Requiem for Ricker: Unpacking MSY. B Mar Sci 70(2):763鈥?81 29. Mangel M, Levin P, Patil A (2006) Using life history and persistence criteria to prioritize habitats for management and conservation. Ecol Appl 16(2):797鈥?06 CrossRef 30. Mangel M, Brodziak J, DiNardo G (2010) Reproductive ecology and scientific inference of steepness: a fundamental metric of population dynamics and strategic fisheries management. Fish Fish 11(1):89鈥?04 CrossRef 31. Mangel M, MacCall AD, Brodziak J, Dick EJ, Forrest RE, Pourzand R, Ralston S (2013) A perspective on steepness, reference points, and stock assessment. Can J Fish Aquat Sci 70(6):930鈥?40 CrossRef 32. Marshall CT (2009) Fish reproductive biology: implications for assessment and management. In: Jakobsen T, Fogarty M J, Megrey B A, Moksness E (eds) Fish reproductive biology: Implications for assessment and management. Wiley-Blackwell, West Sussex, pp 395鈥?20 CrossRef 33. May RM (1974) Biological populations with nonoverlapping generations: Stable points, stable cycles, and chaos. Science 186(4164):645鈥?47 CrossRef 34. Mchich R, Auger PM, Bravo de la Parra R, Raissi N (2002) Dynamics of a fishery on two fishing zones with fish stock dependent migrations: Aggregation and control. Ecol Model 158(1鈥?):51鈥?2 CrossRef 35. Moore JW, Yeakel JD, Peard D, Lough J, Beere M (2014) Life-history diversity and its importance to population stability and persistence of a migratory fish: Steelhead in two large North American watersheds. J Anim Ecol 36. Morgan MJ, Perez-Rodriguez A, Saborido-Rey F, Marshall CT (2011) Does increased information about reproductive potential result in better prediction of recruitment? Can J Fish Aquat Sci 68(8):1361鈥?368 CrossRef 37. Munch SB, Kottas A, Mangel M (2005) Bayesian nonparametric analysis of stock-recruitment relationships. Can J Fish Aquat Sci 62(8):1808鈥?821 CrossRef 38. Murdoch WW (1994) Population regulation in theory and practice. Ecology 75(2):271鈥?87 CrossRef 39. Myers RA, Barrowman NJ, Hutchings JA, Rosenberg AA (1995) Population dynamics of exploited fish stocks at low population levels. Science 269(5227):1106鈥?108 CrossRef 40. Perretti CT, Munch SB, Sugihara G (2013a) Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data. Proc Natl Acad Sci USA 110(13):5253鈥?5257 CrossRef 41. Perretti CT, Sugihara G, Munch SB (2013b) Nonparametric forecasting outperforms parametric methods for a simulated multispecies system. Ecology 94(4):794鈥?00 CrossRef 42. Radchenko VI, Temnykh OS, Lapko VV (2007) Trends in abundance and biological characteristics of pink salmon (Oncorhynchus gorbuscha) in the North Pacific Ocean. North Pac Anadromous Fish Comm Bull 4:7鈥?1 43. Ricker H (1954) Stock and recruitment. Can J Fish Aquat Sci 11(5):559鈥?23 44. Shelton AO, Mangel M (2011) Fluctuations of fish populations and the magnifying effects of fishing. Proc Natl Acad Sci USA 108(17):7075鈥?080 CrossRef 45. Shepherd J (1982) A versatile new stock-recruitment relationship for fisheries, and the construction of sustainable yield curves. J Conseil 40(1):67 CrossRef 46. Sissenwine MP, Shepherd JG (1987) An alternative perspective on recruitment overfishing and biological reference points. Can J Fish Aquat Sci 44(4):913鈥?18 CrossRef 47. Stiefs D, van Voorn GAK, Kooi BW, Feudel U, Gross T (2010) Food quality in producer-grazer models: a generalized analysis. Am Nat 176(3):367鈥?80 CrossRef 48. Sydsaeter K, Hammond PJ (1995) Essential mathematics for economic analysis. Prentice-Hall Inc., New Jersey 49. Yeakel JD, Stiefs D, Novak M, Gross T (2011) Generalized modeling of ecological population dynamics. Theor Ecol 4(2):179鈥?94 CrossRef
- 刊物主题:Theoretical Ecology/Statistics; Plant Sciences; Zoology;
- 出版者:Springer Netherlands
- ISSN:1874-1746
文摘
Models of stock-recruitment relationships (SRRs) are often used to predict fish population dynamics. Commonly used SRRs include the Ricker, Beverton-Holt, and Cushing functional forms, which differ primarily by the degree of density-dependent effects (compensation). The degree of compensation determines whether recruitment respectively decreases, saturates, or increases at high levels of spawning stock biomass. In 1982, J.G. Shepherd united these dynamics into a single model, where the degree of compensation is determined by a single parameter. However, the difficulty in relating this parameter to biological data has limited its usefulness. Here, we use a generalized modeling framework to show that the degree of compensation can be related directly to the functional elasticity of growth, which is a general quantity that measures the change in recruitment relative to a change in biomass. We show that the elasticity of growth can be calculated from perturbations in fish biomass, is robust to observation error, and can be used to determine general attributes of the SRR in both continuous time production models, as well as discrete time age-structured models.
| |
NGLC 2004-2010.National Geological Library of China All Rights Reserved.
Add:29 Xueyuan Rd,Haidian District,Beijing,PRC. Mail Add: 8324 mailbox 100083
For exchange or info please contact us via email.
| |