Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)

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• 作者：1. Laboratory of Clinical & Epidemiological Virology ; Department of Microbiology & Immunology ; Rega Institute for Medical Research ; University of Leuven ; Minderbroedersstraat 10 ; 3000 Leuven ; Belgium2. Clinical Research and Development ; Novartis Vaccines & Diagnostics ; Inc ; Cambridge ; MA 02139 ; USA3. Laboratory of Infectious Diseases ; National Institute of Allergy and Infectious Diseases ; National Institutes of Health ; Bethesda ; MD 20892 ; USA4. Vector-Borne Diseases Program ; Institute for Animal Health ; Ash Road ; Pirbright ; Surrey ; GU24 0NF UK5. Veterinary Medical Research Institute ; Hungarian Academy of Sciences ; Hungária krt. 21 ; Budapest ; 1143 Hungary6. National Center for Biotechnology Information ; National Library of Medicine ; National Institutes of Health ; Bethesda ; MD 20892 ; USA7. Department of Microbiology and Ecology ; School of Medicine ; University of Valencia ; Avda. Blasco Ibá?ez ; 17 ; 46010 Valencia ; Spain8. Division of Viral Diseases ; National Center for Immunization and Respiratory Diseases ; Centers for Disease Control and Prevention ; Atlanta ; GA ; USA9. Department of Molecular Virology and Microbiology and Medicine-GI ; Baylor College of Medicine ; Houston ; USA10. Enteric Virus Unit ; Virus Reference Department ; Centre for Infection ; Health Protection Agency ; Colindale ; London ; UK11. Federal Institute for Risk Assessment ; Berlin ; Germany12. Enteric Virus Research Group ; Murdoch Childrens Research Institute ; Royal Children’s Hospital ; Parkville ; VIC ; Australia13. Department of Veterinary Public Health ; University of Bari ; Bari ; Italy14. Department of Molecular Microbiology and Immunology ; Nagasaki University ; Nagasaki ; 852-8523 Japan15. Instituto de Virología ; CICVyA ; INTA Castelar ; Buenos Aires ; Argentina16. Laboratory of Virology ; ICDDR ; B ; Mohakhali ; Dhaka ; 1212 Bangladesh17. Department of Veterinary Public Health & Food Safety ; Istituto Superiore di Sanità ; Rome ; Italy18. Food Animal Health Research Program ; Ohio Agricultural Research and Development Center ; The Ohio State University ; Wooster ; OH 44691 ; USA19. Departamento de Virologia ; Instituto de Microbiologia ; Universidade Federal do Rio de Janeiro ; Rio de Janeiro ; Brazil20. University of Ljubljana ; Faculty of Medicine ; Institute of Microbiology and Immunology ; Zaloska 4 ; 1104 Ljubljana ; Slovenia21. Department of Virology and Parasitology ; Fujita Health University School of Medicine ; Toyoake ; Aichi 470-1192 ; Japan22. Department of Medicine ; Addenbrooke’s Hospital ; University of Cambridge ; Cambridge ; UK
• 刊名：Archives of Virology
• 出版年：2011
• 出版时间：August 2011
• 年：2011
• 卷：156
• 期：8
• 页码：1397-1413
• 全文大小：3.6 MB
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• 作者单位：http://www.springerlink.com/content/k030442n21qu41r1/
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Virology
  Medical Microbiology
  Infectious Diseases
  
• 出版者：Springer Wien
• ISSN：1432-8798

文摘

In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.