Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato

详细信息    查看全文

• 作者：Xiaohui Yang (1) (2) (3)
  Myluska Caro (4)
  Samuel F. Hutton (3)
  John W. Scott (3)
  Yanmei Guo (1)
  Xiaoxuan Wang (1)
  Md Harunur Rashid (4)
  Dora Szinay (5)
  Hans de Jong (5)
  Richard G. F. Visser (4)
  Yuling Bai (4)
  Yongchen Du (1)
  
• 关键词：Breeding ; Resistance ; Tomato ; Tomato yellow leaf curling virus (TYLCV) ; Virus ; induced gene silencing
• 刊名：Molecular Breeding
• 出版年：2014
• 出版时间：August 2014
• 年：2014
• 卷：34
• 期：2
• 页码：749-760
• 全文大小：1,972 KB
• 参考文献：1. Anbinder I, Reuveni M, Azari R, Paran I, Nahon S, Shlomo H, Chen L, Lapidot M, Levin I (2009) Molecular dissection of tomato leaf curl virus resistance in tomato line TY172 derived from / Solanum peruvianum. Theor Appl Genet 119:519-30 CrossRef
  2. Antignus Y, Nestel D, Cohen S, Lapidot M (2001) Ultraviolet-deficient greenhouse environment affects whitefly attraction and flight-behavior. Environ Entomol 30:394-99 CrossRef
  3. Buck KW (1999) Replication of tobacco mosaic virus RNA. Philos Trans R Soc Lond B Biol Sci 354(1383):613-27 CrossRef
  4. Canady MA, Ji Y, Chetelat RT (2006) Homeologous recombination in Solanum lycopersicoides introgression lines of cultivated tomato. Genetics 174(4):1775-788 CrossRef
  5. Carr JP, Lewsey MG, Palukaitis P (2010) Signaling in induced resistance. Adv Virus Res 76:57-21 CrossRef
  6. Cohen S, Lapidot M (2007) Appearance and expansion of TYLCV: a historical point of view. In: Czosnek H (ed) Tomato yellow leafcurl virus disease. Springer, The Netherlands, pp 3-2 CrossRef
  7. Griffiths PD, Scott JW (2001) Inheritance and linkage of tomato mottle virus resistance genes derived from / Lycopersicon chilense accession LA 1932. J Am Soc Hort Sci 126:462-67
  8. Haag JR, Pikaard CS (2011) Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 12(8):483-92 CrossRef
  9. Hanson PM, Bernacchi D, Green S, Tanksley SD, Muniyappa V, Padmaja AS, Chen H, Kuo G, Fang D, Chen J (2000) Mapping a wild tomato introgression associated with tomato yellow leaf curl virus resistance in a cultivated tomato line. J Am Soc Hort Sci 15:15-0
  10. Hanson PM, Green SK, Kuo G (2006) / Ty- / 2, a gene on chromosome 11 conditioning geminivirus resistance in tomato. Rep Tomato Genet Coop 56:17-8
  11. Horowitz AR, Denholm I, Morin S (2007) Resistance of the TYLCV whitefly vector / Bemisia tabaci to insecticides. In: Czosnek H (ed) Tomato yellow leafcurl virus disease. Springer, New York, pp 309-29
  12. Howe GA, Lee GI, Itoh A, Li L, DeRocher AE (2000) Cytochrome P450-dependent metabolism of oxylipins in tomato. Cloning and expression of allene oxide synthase and fatty acid hydroperoxide lyase. Plant Physiol 123(2):711-24 CrossRef
  13. Huang S, Van Der Vossen EA, Kuang H, Vleeshouwers VG, Zhang N, Borm TJ, Van Eck HJ, Baker B, Jacobsen E, Visser RG (2005) Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. Plant J 42(2):251-61 CrossRef
  14. Hutton SF, Scott JW, Schuster DJ (2012) Recessive resistance to / Tomato yellow leaf curl virus from the tomato cultivar Tyking is located in the same region as / Ty-5 on chromosome 4. HortScience 47(3):324-27
  15. Ji Y, Schuster DJ, Scott JW (2007a) / Ty- / 3, a begomovirus resistance locus near the / Tomato yellow leaf curl virus resistance locus / Ty- / 1 on chromosome 6 of tomato. Mol Breed 20:271-84 CrossRef
  16. Ji Y, Scott JW, Hanson P, Graham E, Maxwell DP (2007b) Sources of resistance, inheritance, and location of genetic loci conferring resistance to members of the tomato-infecting begomoviruses. In: Czosnek H (ed) Tomato yellow leaf curl virus disease: management, molecular biology, breeding for resistance. Kluwer, Dordrecht, pp 343-62 CrossRef
  17. Ji Y, Salus MS, van Betteray B, Smeets J, Jensen KS, Martin CT, Mejía L, Scott JW, Havey MJ, Maxwell DP (2007c) Co-dominant SCAR markers for detection of the / Ty- / 3 and / Ty- / 3a loci from / Solanum chilense at 25?cM of chromosome 6 of tomato. Rep Tomato Genet Coop 57:25-8
  18. Ji Y, Scott JW, Maxwell DP, Schuster DJ (2008) / Ty- / 4, a tomato yellow leaf curl virus resistance gene on chromosome 3 of tomato. Rep Tomato Genet Coop 58:29-1
  19. Ji Y, Scott JW, Schuster DJ (2009a) Toward fine mapping of the / Tomato yellow leaf curl virus resistance gene / Ty- / 2 on chromosome 11 of tomato. HortScience 44(3):614-18
  20. Ji Y, Scott JW, Schuster DJ, Maxwell DP (2009b) Molecular mapping of / Ty- / 4, a new / Tomato Yellow Leaf Curl Virus resistance locus on chromosome 3 of tomato. J Am Soc Hort Sci 134:281-88
  21. Kalloo G, Banerjee MK (1990) Transfer of tomato leaf curl virus resistance from / Lycopersicon hirsutum f. / glabratum to / L. esculentum. Plant Breed 105:156-59 CrossRef
  22. Kaufmann K, Muino JM, Jauregui R, Airoldi CA, Smaczniak C, Krajewski P, Angenent GC (2009) Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol 7(4):e1000090 CrossRef
  23. Krattinger SG, Lagudah ES, Spielmeyer W, Singh RP, Huerta-Espino J, McFadden H, Bossolini E, Selter LL, Keller B (2009) A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science 323(5919):1360-363 CrossRef
  24. Lai M (1998) Cellular factors in the transcription and replication of viral RNA genomes: a parallel to DNA-dependent RNA transcription. Virology 244(1):1-2 CrossRef
  25. Larkan N, Lydiate D, Parkin I, Nelson M, Epp D, Cowling W, Rimmer S, Borhan M (2013) The Brassica napus blackleg resistance gene LepR3 encodes a receptor-like protein triggered by the Leptosphaeria maculans effector AVRLM1. New Phytol 197(2):595-05 CrossRef
  26. Lee S, Woo Y-M, Ryu S-I, Shin Y-D, Kim WT, Park KY, Lee I-J, An G (2008) Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol 147(1):156-68 CrossRef
  27. Levin I, Karniel U, Fogel D, Reuveni M, Gelbart D, Evenor D, Chen L, Nahon S, Shlomo H, Machbosh Z, Lapidot M (2013) Cloning and analysis of the / Tomato yellow leaf curl virus resistance gene / Ty- / 5. In: Proceedings of the tomato breeders roundtable, Chaing-Mai, Thailand. http://tgc.ifas.ufl.edu/2013/abstracts/LevinAbstract%20TBRT%202013.pdf
  28. Li W, Royer S, Chelelat RT (2010) Fine Mapping of / ui6.1, a gametophytic factor controlling pollen-side unilateral incompatibility in interspecific / Solanum Hybrids. Genetics 185(3):1069-080 CrossRef
  29. Liu Y, Schiff M, Dinesh-Kumar S (2002) Virus-induced gene silencing in tomato. Plant J 31(6):777-86 CrossRef
  30. Matsuda D, Dreher TW (2004) The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3-translational enhancer. Virology 321(1):36-6 CrossRef
  31. Mejía L, Teni RE, Vidavski F, Czosnek H, Lapidot M, Nakhla MK, Maxwell DP (2005) Evaluation of tomato germplasm and selection of breeding lines for resistance to begomoviruses in Guatemala. Acta Hort 695:251-56
  32. Mejía L, Teni RE, García BE, Fulladolsa AC, Méndez L, Melgar S, Maxwell DP (2010) Preliminary observations on the effectiveness of five introgressions for resistance to begomoviruses in tomatoes. TGC Report 60:41-3
  33. Moshe A, Pfannstiel J, Brotman Y, Kolot M, Sobol I, Czosnek H, Gorovits R (2012) Stress responses to tomato yellow (leaf curl virus TYLCV) infection of resistant and susceptible tomato plants are different. Metabolomics 2153-0769
  34. Pico B, Diez MJ, Nuez F (1996) Viral diseases causing the greatest economic losses to the tomato crop. 2. The tomato yellow leaf curl virus—a review. Sci Hort 67:151-96 CrossRef
  35. Schmitz G, Tillmann E, Carriero F, Fiore C, Cellini F, Theres K (2002) The tomato blind gene encodes a MYB transcription factor that controls the formation of lateral meristems. Proc Natl Acad Sci USA 99:1064-069 CrossRef
  36. Scott JW (2007) Breeding for resistance to viral pathogens. In: Razdan MK, Mattoo AK (eds) Genetic improvement of solanaceous crops. Science Publisher Inc, Enfield, NH, pp 447-74
  37. Scott JW, Agrama HA, Jones JP (2004) RFLP-based analysis of recombination among resistance genes to fusarium wilt races 1, 2 and 3 in tomato. J Am Soc Hort Sci 129(3):394-00
  38. Simons G, Groenendijk J, Wijbrandi J, Reijans M, Groenen J, Diergaarde P, Van der Lee T, Bleeker M, Onstenk J, de Both M, Haring Jurriaan Mes M, Cornelissen B, Zabeau M, Vos P (1998) Dissection of the fusarium / I2 gene cluster in tomato reveals six homologs and one active gene copy. Plant Cell 10(6):1055-068 CrossRef
  39. Szinay D, Wijnker E, van den Berg R, Visser RG, de Jong H, Bai Y (2012) Chromosome evolution in Solanum traced by cross-species BAC-FISH. New Phytol 195(3):688-98 CrossRef
  40. Tena G, Boudsocq M, Sheen J (2011) Protein kinase signaling networks in plant innate immunity. Curr Opin Plant Biol 14(5):519-29 CrossRef
  41. Thivierge K, Cotton S, Dufresne PJ, Mathieu I, Beauchemin C, Ide C, Fortin MG, Laliberté J-F (2008) Eukaryotic elongation factor 1A interacts with / Turnip mosaic virus RNA-dependent RNA polymerase and VPg-Pro in virus-induced vesicles. Virology 377(1):216-25 CrossRef
  42. Thornton B, Basu C (2011) Real-time PCR (qPCR) primer design using free online software. Biochem Mol Biol Educ 39(2):145-54 CrossRef
  43. Verlaan MG, Szinay D, Hutton SF, de Jong H, Kormelink R, Visser RGF, Scott JW, Bai YL (2011) Chromosomal rearrangements between tomato and / Solanum chilense hamper mapping and breeding of the TYLCV resistance gene / Ty- / 1. Plant J 68(6):1093-103 CrossRef
  44. Verlaan MG, Hutton SF, Ibrahem RM, Kormelink R, Visser RG, Scott JW, Edwards JD, Bai Y (2013) The tomato yellow leaf curl virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA–dependent RNA polymerases. PLoS Genet 9(3):e100339 CrossRef
  45. Vidavski FS (2007) Exploitation of resistance genes found in wild tomato species to produce resistant cultivars; pile up of resistant genes. In: Czosnek H (ed) Tomato yellow leaf curl virus disease: management, molecular biology, breeding for resistance. Kluwer, Dordrecht, pp 363-72 CrossRef
  46. Vidavski F, Czosnek H, Gazit S, Levy D, Lapidot M (2008) Pyramiding of genes conferring resistance to / Tomato yellow leaf curl virus from different wild tomato species. Plant Breed 127(6):625-31 CrossRef
  47. Zamir D, Eksteinmichelson I, Zakay Y, Navot N, Zeidan M, Sarfatti M, Eshed Y, Harel E, Pleban T, Vanoss H, Kedar N, Rabinowitch HD, Czosnek H (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, / Ty- / 1. Theor Appl Genet 88:141-46 CrossRef
  
• 作者单位：Xiaohui Yang (1) (2) (3)
  Myluska Caro (4)
  Samuel F. Hutton (3)
  John W. Scott (3)
  Yanmei Guo (1)
  Xiaoxuan Wang (1)
  Md Harunur Rashid (4)
  Dora Szinay (5)
  Hans de Jong (5)
  Richard G. F. Visser (4)
  Yuling Bai (4)
  Yongchen Du (1)
  
  1. Institute of Vegetable and Flowers, The Chinese Academy of Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China
  2. Shandong Key Laboratory for Biology of Greenhouse Vegetables, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan, China
  3. Gulf Coast Research and Education Center, University of Florida, 14625 CR 672, Wimauma, FL, 33598, USA
  4. Wageningen UR Plant Breeding, Wageningen University and Research Center, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
  5. Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
  
• ISSN：1572-9788

文摘

Resistances to begomoviruses, including bipartite tomato mottle virus and monopartite tomato yellow leaf curl virus (TYLCV), have been introgressed to cultivated tomato (Solanum lycopersicum) from wild tomato accessions. A major gene, Ty-2 from S. habrochaites f. glabratum accession “B6013,-/em> that confers resistance to TYLCV was previously mapped to a 19-cM region on the long arm of chromosome 11. In the present study, approximately 11,000 plants were screened and nearly 157 recombination events were identified between the flanking markers C2_At1g07960 (82.5?cM, physical distance 51.387?Mb) and T0302 (89?cM, 51.878?Mb). Molecular marker analysis of recombinants and TYLCV evaluation of progeny from these recombinants localized Ty-2 to an approximately 300,000-bp interval between markers UP8 (51.344?Mb) and M1 (51.645?Mb). No recombinants were identified between TG36 and C2_At3g52090, a region of at least 115?kb, indicating severe recombination suppression in this region. Due to the small interval, fluorescence in situ hybridization analysis failed to clarify whether recombination suppression is caused by chromosomal rearrangements. Candidate genes predicted based on tomato genome annotation were analyzed by RT-PCR and virus-induced gene silencing. Results indicate that the NBS gene family present in the Ty-2 region is likely not responsible for the Ty-2-conferred resistance and that two candidate genes might play a role in the Ty-2-conferred resistance. Several markers very tightly linked to the Ty-2 locus are presented and useful for marker-assisted selection in breeding programs to introgress Ty-2 for begomovirus resistance.