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在“Elsevier电子期刊”中，命中：48条，耗时：0.0149925 秒

在所有数据库中总计命中：51条

1.ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking

作者：Christine Yueh¹ ; David R. Hall² ; Bing Xia¹ ; Dzmitry Padhorny³ ; ⁴ ; Dima Kozakov¹ ; ³ ; ⁴ ; ^{midas@laufercenter.org} ; Sandor Vajda¹ ; ^vajda@bu.edu

关键词：PQS ; Protein Quaternary Structure ; PDB ; Protein Data Bank ; EPPIC ; Evolutionary Protein&ndash ; Protein Interface Classifier ; CAPRI ; Critical Assessment of Predicted Interactions ; IRMSD ; interface RMSD ; PISA ; Proteins ; Interfaces ; Structures and Assemblies

刊名：Journal of Molecular Biology

出版年：2017

2.Understanding the role of dynamics in the iron sulfur cluster molecular machine

作者：Danilo di Maio^a ; ^b ; Balasubramanian Chandramouli^a ; ^b ; Robert Yan^c ; Giuseppe Brancato^a ; ^b ; ^{giuseppe.brancato@sns.it} ; Annalisa Pastore^c ; ^d ; ^{annalisa.pastore@crick.ac.uk}

关键词：NMR ; nuclear magnetic resonance ; MD ; molecular dynamics ; PCA ; principal component analysis ; ED ; essential dynamics ; RMSD ; root-mean square deviation ; RMSF ; root-mean-square fluctuation

刊名：Biochimica et Biophysica Acta (BBA) - General Subjects

出版年：2017

3.Pterostilbene-mediated Nrf2 activation: Mechanistic insights on Keap1:Nrf2 interface

作者：Elango Bhakkiyalakshmi^a ; Kesavan Dineshkumar^b ; Suresh Karthik^a ; Dornadula Sireesh^c ; Waheeta Hopper^b ; Ramasamy Paulmurugan^d ; Kunka Mohanram Ramkumar^c ; ^{ramkumar.km@res.srmuniv.ac.in" class="auth_mail" title="E-mail the corresponding author}

关键词：PTS ; pterostilbene ; ARE ; antioxidant responsive element ; Keap1 ; Kelch-like ECH-associated protein-1 ; Nrf2 ; nuclear factor erythroid 2-related factor 2 ; MIN6 cells ; mouse insulinoma-6 cells ; MD ; molecular dynamics ; RMSD ; root-mean square deviation ; MM-GBSA ; Molecular Mechanics-Generalized Born Surface Area ; NQO1 ; NAD(P)H ; quinine oxidoreductase 1 ; HO-1 ; heme oxygenase 1 ; SOD ; superoxide dismutase ; GST ; glutathione S-transferase ; GPx ; glutathione peroxidase

刊名：Bioorganic & Medicinal Chemistry

出版年：2016

4.Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase

作者：Shigeru Sugiyama^a ; ^b ; ^{sugiyama@cryst.eei.eng.osaka-u.ac.jp" class="auth_mail" title="E-mail the corresponding author} ; Sae Ishikawa^c ; Hideyuki Tomitori^d ; Mayumi Niiyama^a ; ^b ; Mika Hirose^a ; ^b ; Yuma Miyazaki^c ; Kyohei Higashi^e ; Michio Murata^a ; ^b ; Hiroaki Adachi^c ; ^f ; Kazufumi Takano^f ; ^g ; Satoshi Murakami^f ; ^h ; Tsuyoshi Inoue^c ; ^f ; Yusuke Mori^c ; ^f ; Keiko Kashiwagi^d ; Kazuei Igarashi^e ; ⁱ ; Hiroyoshi Matsumura^f ; ^j ; ^{h-matsu@fc.ritsumei.ac.jp" class="auth_mail" title="E-mail the corresponding author}

关键词：SAT ; spermidine acetyltransferase ; SPD ; spermidine ; CoA ; coenzyme A ; acetyl-CoA ; acetyl coenzyme A ; E.coli ; Escherichia coli ; IPTG ; isopropyl-1-thio-β-d-galactopyranoside ; RMSD ; root-mean-square deviation

刊名：International Journal of Biochemistry and Cell Biology

出版年：2016

5.Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

作者：Thom Vreven¹ ; ^&dagger ; ; Iain H. Moal² ; ^&dagger ; ; ² ; Anna Vangone³ ; ^&dagger ; ; Brian G. Pierce¹ ; ³ ; Panagiotis L. Kastritis³ ; ⁴ ; Mieczyslaw Torchala⁴ ; Raphael Chaleil⁴ ; Brian Jimé ; nez-Garcí ; a² ; Paul A. Bates⁴ ; ^{paul.bates@crick.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Juan Fernandez-Recio² ; ^{juan.fernandez@bsc.es" class="auth_mail" title="E-mail the corresponding author} ; Alexandre M.J.J. Bonvin³ ; ^{a.m.j.j.bonvin@uu.nl" class="auth_mail" title="E-mail the corresponding author} ; Zhiping Weng¹ ; ^{zhiping.weng@umassmed.edu" class="auth_mail" title="E-mail the corresponding author}

关键词：PDB ; Protein Data Bank ; I-RMSD ; interface root-mean-square deviation ; 3D ; three-dimensional

刊名：Journal of Molecular Biology

出版年：2015

6.Identification of potential Tpx inhibitors against pathogen-host interactions

作者：Utku Deniz ; Kutlu O. Ulgen ; Elif Ozkirimli ; ^{elif.ozkirimli@boun.edu.tr" class="auth_mail" title="E-mail the corresponding author}

关键词：Tpx ; Virtual screening ; Molecular docking ; Efficiency index ; Substructure search

刊名：Computational Biology and Chemistry

出版年：2015

7.Proteins Feel More Than They See: Fine-Tuning of Binding Affinity by Properties of the Non-Interacting Surface

作者：Panagiotis L. Kastritis¹ ; ^{kastriti@embl.de" class="auth_mail} ; Joã ; o P.G.L.M. Rodrigues ; Gert E. Folkers ; Rolf Boelens ; Alexandre M.J.J. Bonvin ; ^{a.m.j.j.bonvin@uu.nl" class="auth_mail}

关键词：BSA ; buried surface area ; NIS ; non-interacting surface ; MAE ; mean absolute error ; i-RMSD ; interface-RMSD

刊名：Journal of Molecular Biology

出版年：15 July 2014

8.PLUMED-GUI: An environment for the interactive development of molecular dynamics analysis and biasing scripts

作者：Toni Giorgino

关键词：Graphical user interface ; VMD ; PLUMED ; Molecular dynamics ; Collective variables ; Metadynamics

刊名：Computer Physics Communications

出版年：March, 2014

9.Identification of a novel ATPase activity in 14-3-3 proteins - Evidence from enzyme kinetics, structure guided modeling and mutagenesis studies

作者：Manoj P. Ramteke ; Pradnya Shelke ; Vidhya Ramamoorthy ; Arun Kumar Somavarapu ; Amit Kumar Singh Gautam ; Padma P. Nanaware ; Sudheer Karanam ; Sami Mukhopadhyay ; Prasanna Venkatraman

关键词：WT ; wild-type ; Ni-NTA ; nickel-nitriloacetic acid ; MALDI ; matrix assisted laser desorption ionization ; TOF ; tandem time of flight ; PDB ; protein data bank ; ATP-纬-S ; adenosine 5&prime ; -(3-thiotriphosphate) ; AMP-PCP ; adenylylmethylenediphosphonate ; HEPES ; 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid ; Ci ; curie ; RMSD ; root mean-square deviation ; PLP ; piecewise linear pairwise potential

刊名：FEBS Letters

出版年：3 January, 2014

10.Steric Mechanism of Auto-Inhibitory Regulation of Specific and Non-Specific DNA Binding by the ETS Transcriptional Repressor ETV6

作者：Soumya De¹Author Vitae ; Anson C.K. Chan² ; H. Jerome Coyne III¹ ; Niraja Bhachech³ ; ⁴ ; Ulrike Hermsdorf¹ ; Mark Okon¹ ; Michael E.P. Murphy² ; Barbara J. Graves³ ; ⁴Author Vitae ; Lawrence P. McIntosh¹ ; ^{mcintosh@chem.ubc.ca" class="auth_mail}Author Vitae

关键词：ITC ; isothermal titration calorimetry ; SRR ; serine-rich region ; CSP ; chemical shift perturbation ; HSQC ; heteronuclear single quantum correlation ; NOE ; nuclear Overhauser enhancement ; wHTH ; winged helix&ndash ; turn&ndash ; helix ; NOESY ; NOE spectroscopy

刊名：Journal of Molecular Biology

出版年：3 April, 2014

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